XLOC_015513 (htr5aa)


Basic Information

Item Value
gene id XLOC_015513
gene name htr5aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 29925561 ~ 29940519 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031018
CTCAGTTGTTCATCTCACTGGGATCTGACTTGGTAACAGTGCGTTGTTAACCTTGTATGCGTGTGGTCTGCGCCGAGGTGGCGACTTGAGAAAATGCAGCAGCACCGGTCGGTCGGTCTCTCTTCTAGCTGGAGATCCACAGCCTGACACACAACAGTTCACCCGGGATGTTGTTTTCTACCGAATGGGGTGATACTTCTTTCGATGAAGCAGAAGTGCTGTTTCCAAATGGTAAGCGGGAAGGGGAGAAAAACAACCACCAGCTGAGCTGTTGCAGTCCACTGAAGTCCTTTCTCCCTATTTTATAAGTGGTGTAGAGTGGACAAAAGTGCTCTCAGTATCATGTCTGACGTCAGCCAGAACAGCTCCTTTAATAATCAAAGCTCAGATTATGGAAATGTCTACAGGCCACAGACAGTGTTCAGCGTCTTGACATTCACCCTTCTGGCCATGCTTGTAGTGGCCACATTTTTCTGGAACATGCTCGTCCTGGTCACGATTCTCCGGGTCAGAACATTTCACAGAGTCCCCCACAACCTTGTAGCCTCCATGGCTATATCTGACGTCATGGTGGCAGCTTTGGTGATGCCTCTCAGTTTGGTCCACGAGCTGAACGGTCGTCGATGGAAGCTGGGTCGCGTTCTCTGTCAAGTCTGGATATCGTTTGATGTCCTGTGCTGTACGGCTAGCATTTGGAACGTGACCGCAATAGCCCTCGACCGTTACTGGTCCATAACTCGACACCTGGAGTACACCCTAAAGACCCGGAAGAAGATCTCCAATGTGATGATCGGGTTAACCTGgctgctttcatctgttatttcgcTCTCGCCTCTGTTTGGCTGGGGTGAGACGTATTCGGAGGAGAACATGGAGTGCCAGGTGAGCCAGGAGCCGTCTTACACCATCTTTTCCACATTCGGGGCCTTCTATCTGCCTCTCTGTGTTGTGCTGTTTGTCTACTGGAAGATTTACAAAGCTGCTAAGTTCCGTATTGGATCAAAGAGGACCAACACCATCACTCCAGTTGCAGAGGCTGGAGAGGTAAAAGAAGCCTCCAGGCAACAGCCTCAGATGGTCTTCACAGTTCGTCATGCCACGGTGACGTTTCAGACTGACAGCGAGACGTGGCGCGAGCAGAAAGAGAAGCGCGCAGCTCTGATGGTGGGCATCCTCATCGGAGTTTTCGTCCTGTGCTGGATTCCATTCTTCCTAACCGAACTCATCACCCCGCTGTGCTCCTGCCACATTCCTCCAATATGGAAGAGTGTATTTCTCTGGCTGGGTTACTCCAACTCCTTCTTCAACCCGCTCATTTACACAGCCTTTAACAAGAACTATAATAACGCATTCAGGAATCTCTTCTCTCGACAGCGCTGAGCAAAATAGAAAACTCGGCCTTGCCATAAATGCCAGATTAAAGCGCTCTTAAGATTTGAGGATGAAGTGCGGTTATCTGAGCTCTCCAGAAAGCACGGATTCACAAAGAAACAGCGCTCGAGTACTGATGGAATGATGTCTGGACTTTCACTGCCAGCCGAAGAGATCATTTGACCCAGGGTTTACAACAAAGGACACTCAGCCAAAATGTCAGTCGCCTGCATTAAATGAGTATAGAGTGCTTCTTACTTTTAGAAGTCAGTTGATatgagtttacatttattttacttttgtctctttttttttactaagaggGCAAACGTATACGTTAAAACAAAGGACGCATAAACAGTAATACAATAGAGATGGAAATAACAAGAATGTGTATAATCAGCAATGTCAACCAGAATGATATTGATAGTATTTAATATGTAGCATTCATAGTCATGATAATACTAAAATATTGatgctaaaaatattaataaataaacaaagttcATGATGATTATTTATTATGGAATGACAGCAACGGAGATGTGAGTGATGAAAAAGGTAATATAATGATGATGTAATAATAGTGATGGAAAAACACATACCTTCTATCCTagcttctttctctttctttgctTTTGAGAGTTTTAATTGATATCCACATGGCTTGTTGAGCAGAATAAACAATGACCTTTGTTCAAACAGCAGAAAACCAAAAATTTgtcattttgataaataaaacataatgtgCATTCAGTTGTTTGTTCTTGCAGAAAAAAAACTGGCAGGTTTATTAGCAGTTTGAAAAAGACTGAAAGGCAAAAACCACCAGCTGGATGTACACCTGGCGAAAATCTTGTTGTCGGTCTcagttgtaagagaaacaaataataacttgactttaggTTGAtcctttggaaaagtggcagaaggtatatGTTTCTGATCATTCATctcttgaactgcatcccaatcatcacagatgctgcagaagatctattggaacctACATGGAATCAAGATTcttagagaaatcagtcaagtttggtaaaggaaaaatcatggtttggagttacattcagtaagAGGGCTGTGCAAgtgatctgcaaagtggatggcaacataaaCAGCCTGCAGGTATCAAGacacttgtgctgcccattatattacaaaccacaggagagggcaaattcttcagcaggatagtgctccttctcagcCTCCAGATcaaatttccaaaaatcaaagaaggtcaaagtgctccaggattggccagaccaGTCACCACAATGAACATTATGGAGCATGTCTGAgctaagatgaaggaggaggcattgaagataaatccaaagaatcttaatgaacgggagtcctgcaagaatgctttctttgccattccagatgactttattaataagtaatttgAGAAACTGCAGAAATTTTTGGATGCAGTCATCCAggttcatgggagtcatacacaatattaattctttttccactgcaccatgactttatattctatactgtacattattactGTTGAGTGAC
>TCONS_00031019
TCTCTCTTCTAGCTGGAGATCCACAGCCTGACACACAACAGTTCACCCGGGATGTTGTTTTCTACCGAATGGGGTGATACTTCTTTCGATGAAGCAGAAGTGCTGTTTCCAAATGCTGTTGCAGTCCACTGAAGTCCTTTCTCCCTATTTTATAAGTGGTGTAGAGTGGACAAAAGTGCTCTCAGTATCATGTCTGACGTCAGCCAGAACAGCTCCTTTAATAATCAAAGCTCAGATTATGGAAATGTCTACAGGCCACAGACAGTGTTCAGCGTCTTGACATTCACCCTTCTGGCCATGCTTGTAGTGGCCACATTTTTCTGGAACATGCTCGTCCTGGTCACGATTCTCCGGGTCAGAACATTTCACAGAGTCCCCCACAACCTTGTAGCCTCCATGGCTATATCTGACGTCATGGTGGCAGCTTTGGTGATGCCTCTCAGTTTGGTCCACGAGCTGAACGGTCGTCGATGGAAGCTGGGTCGCGTTCTCTGTCAAGTCTGGATATCGTTTGATGTCCTGTGCTGTACGGCTAGCATTTGGAACGTGACCGCAATAGCCCTCGACCGTTACTGGTCCATAACTCGACACCTGGAGTACACCCTAAAGACCCGGAAGAAGATCTCCAATGTGATGATCGGGTTAACCTGgctgctttcatctgttatttcgcTCTCGCCTCTGTTTGGCTGGGGTGAGACGTATTCGGAGGAGAACATGGAGTGCCAGGTGAGCCAGGAGCCGTCTTACACCATCTTTTCCACATTCGGGGCCTTCTATCTGCCTCTCTGTGTTGTGCTGTTTGTCTACTGGAAGATTTACAAAGCTGCTAAGTTCCGTATTGGATCAAAGAGGACCAACACCATCACTCCAGTTGCAGAGGCTGGAGAGGTACAAATGATGTGTTGTGATTTTTCATCATACAGCAACATTTACACACGCTAATGTACTGGCTTTTTAATTTTGTATCTACTGTACTGTACAGCAAATGTCTTACTATTATGAAATTGCAAAGCCTATCATTTTAAGT
>TCONS_00031020
TCTCTCTTCTAGCTGGAGATCCACAGCCTGACACACAACAGTTCACCCGGGATGTTGTTTTCTACCGAATGGGGTGATACTTCTTTCGATGAAGCAGAAGTGCTGTTTCCAAATGCTGTTGCAGTCCACTGAAGTCCTTTCTCCCTATTTTATAAGTGGTGTAGAGTGGACAAAAGTGCTCTCAGTATCATGTCTGACGTCAGCCAGAACAGCTCCTTTAATAATCAAAGCTCAGATTATGGAAATGTCTACAGGCCACAGACAGTGTTCAGCGTCTTGACATTCACCCTTCTGGCCATGCTTGTAGTGGCCACATTTTTCTGGAACATGCTCGTCCTGGTCACGATTCTCCGGGTCAGAACATTTCACAGAGTCCCCCACAACCTTGTAGCCTCCATGGCTATATCTGACGTCATGGTGGCAGCTTTGGTGATGCCTCTCAGTTTGGTCCACGAGCTGAACGGTCGTCGATGGAAGCTGGGTCGCGTTCTCTGTCAAGTCTGGATATCGTTTGATGTCCTGTGCTGTACGGCTAGCATTTGGAACGTGACCGCAATAGCCCTCGACCGTTACTGGTCCATAACTCGACACCTGGAGTACACCCTAAAGACCCGGAAGAAGATCTCCAATGTGATGATCGGGTTAACCTGgctgctttcatctgttatttcgcTCTCGCCTCTGTTTGGCTGGGGTGAGACGTATTCGGAGGAGAACATGGAGTGCCAGGTGAGCCAGGAGCCGTCTTACACCATCTTTTCCACATTCGGGGCCTTCTATCTGCCTCTCTGTGTTGTGCTGTTTGTCTACTGGAAGATTTACAAAGCTGCTAAGTTCCGTATTGGATCAAAGAGGACCAACACCATCACTCCAGTTGCAGAGGCTGGAGAGGTAAAAGAAGCCTCCAGGCAACAGCCTCAGATGGTCTTCACAGTTCGTCATGCCACGGTGACGTTTCAGACTGACAGCGAGACGTGGCGCGAGCAGAAAGAGAAGCGCGCAGCTCTGATGGTGGGCATCCTCATCGGAGTTTTCGTCCTGTGCTGGATTCCATTCTTCCTAACCGAACTCATCACCCCGCTGTGCTCCTGCCACATTCCTCCAATATGGAAGAGTGTATTTCTCTGGCTGGGTTACTCCAACTCCTTCTTCAACCCGCTCATTTACACAGCCTTTAACAAGAACTATAATAACGCATTCAGGAATCTCTTCTCTCGACAGCGCTGA
>TCONS_00031021
TCTCTTCTAGCTGGAGATCCACAGCCTGACACACAACAGTTCACCCGGGATGTTGTTTTCTACCGAATGGGGTGATACTTCTTTCGATGAAGCAGAAGTGCTGTTTCCAAATGCTGTTGCAGTCCACTGAAGTCCTTTCTCCCTATTTTATAAGTGGTGTAGAGTGGACAAAAGTGCTCTCAGTATCATGTCTGACGTCAGCCAGAACAGCTCCTTTAATAATCAAAGCTCAGATTATGGAAATGTCTACAGGCCACAGACAGTGTTCAGCGTCTTGACATTCACCCTTCTGGCCATGCTTGTAGTGGCCACATTTTTCTGGAACATGCTCGTCCTGGTCACGATTCTCCGGGTCAGAACATTTCACAGAGTCCCCCACAACCTTGTAGCCTCCATGGCTATATCTGACGTCATGGTGGCAGCTTTGGTGATGCCTCTCAGTTTGGTCCACGAGCTGAACGGTCGTCGATGGAAGCTGGGTCGCGTTCTCTGTCAAGTCTGGATATCGTTTGATGTCCTGTGCTGTACGGCTAGCATTTGGAACGTGACCGCAATAGCCCTCGACCGTTACTGGTCCATAACTCGACACCTGGAGTACACCCTAAAGACCCGGAAGAAGATCTCCAATGTGATGATCGGGTTAACCTGgctgctttcatctgttatttcgcTCTCGCCTCTGTTTGGCTGGGGTGAGACGTATTCGGAGGAGAACATGGAGTGCCAGGTGAGCCAGGAGCCGTCTTACACCATCTTTTCCACATTCGGGGCCTTCTATCTGCCTCTCTGTGTTGTGCTGTTTGTCTACTGGAAGATTTACAAAGCTGCTAAGTTCCGTATTGGATCAAAGAGGACCAACACCATCACTCCAGTTGCAGAGGTAAAAGAAGCCTCCAGGCAACAGCCTCAGATGGTCTTCACAGTTCGTCATGCCACGGTGACGTTTCAGACTGACAGCGAGACGTGGCGCGAGCAGAAAGAGAAGCGCGCAGCTCTGATGGTGGGCATCCTCATCGGAGTTTTCGTCCTGTGCTGGATTCCATTCTTCCTAACCGAACTCATCACCCCGCTGTGCTCCTGCCACATTCCTCCAATATGGAAGAGTGTATTTCTCTGGCTGGGTTACTCCAACTCCTTCTTCAACCCGCTCATTTACACAGCCTTTAACAAGAACTATAATAACGCATTCAGGAATCTCTTCTCTCGACAGCGCTGA

Function

symbol description
htr5aa Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in brain; inferior raphe nucleus; and optic tectum. Orthologous to human HTR5A (5-hydroxytryptamine receptor 5A).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007187 G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger biological_process
GO:0007198 adenylate cyclase-inhibiting serotonin receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007165 signal transduction biological_process
GO:0030425 dendrite cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function
GO:0004993 G protein-coupled serotonin receptor activity molecular_function
GO:0051378 serotonin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-129 Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Is expressed in brain; inferior raphe nucleus; and optic tectum. Orthologous to human HTR5A (5-hydroxytryptamine receptor 5A).

Ensembl:

ensembl_id ENSDARG00000038869

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031018 False 2919 mRNA 0.43 3 29925561 29940519
TCONS_00031019 False 1030 mRNA 0.47 2 29925677 29936058
TCONS_00031020 False 1227 mRNA 0.50 3 29925677 29938980
TCONS_00031021 True 1216 mRNA 0.50 3 29925679 29938980

Neighbor

gene id symbol gene type direction distance location
XLOC_015512 si:ch211-207d6.2 coding upstream 28989 29795833 ~ 29896572 (+)
XLOC_015511 NA coding upstream 198104 29712210 ~ 29727457 (+)
XLOC_015510 ptf1a coding upstream 213800 29710857 ~ 29711761 (+)
XLOC_015509 dlgap1a coding upstream 232736 29491314 ~ 29692825 (+)
XLOC_015508 cdh18a coding upstream 572382 29249204 ~ 29353179 (+)
XLOC_015514 en2b coding downstream 35900 29976419 ~ 29979956 (+)
XLOC_015515 rbm33b coding downstream 55071 29995590 ~ 30047637 (+)
XLOC_015516 NA coding downstream 132160 30072679 ~ 30089989 (+)
XLOC_015517 dnajb6a coding downstream 162612 30103131 ~ 30116467 (+)
XLOC_015518 BX510360.1 coding downstream 185895 30126414 ~ 30126936 (+)
XLOC_015503 NA non-coding upstream 1502074 28393943 ~ 28423487 (+)
XLOC_015502 NA non-coding upstream 1575114 28245460 ~ 28350447 (+)
XLOC_015501 NA non-coding upstream 1730953 28194138 ~ 28194608 (+)
XLOC_015500 CR925777.1 non-coding upstream 1886936 27975554 ~ 28038625 (+)
XLOC_015521 NA non-coding downstream 256851 30197370 ~ 30197741 (+)
XLOC_015523 CR788254.2 non-coding downstream 328787 30269306 ~ 30270163 (+)
XLOC_015524 CR788254.1 non-coding downstream 335698 30276217 ~ 30277062 (+)

Expression


Co-expression Network