XLOC_015515 (rbm33b)


Basic Information

Item Value
gene id XLOC_015515
gene name rbm33b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 29995590 ~ 30047637 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031023
ACTTAACTTACATGTATTGTGCCTGTGCCACCTGTTTCAGAGAACAGTAATGGGGTTTATGACAAGCCTGGCAGAGAGAAGTTCTTCAGAGGAAGGGAAAAGGTTCAAGATATGAACAGTGATTCAGAGGAAGACATTCTGGTGGATGACTGGTTGACATCCAAACAAGATTTCCTGGACACATCAGATGAAGAGCTGAACGATGACCTTTTGCGTAGCGATGATGAGAACGAAACTATGAGCTCTTCTAAACCAAAACATCAAGCAATTGCACTGCCTCATGTTGTGTGCGAGACATCACACCCTGCTAAAGACCAAGCCATATGTCCTAAAGAAGAGCACACAGAGGTGGACCATGGTGAAGTTTTAGACATCGAAATCAATGCTCCTTCTGGAGATGAATTTCAAGAGCCTGGCGACTATGGTGTCCATCAGCAGGCTAGTGTAAAGGTGGATGTTAAGGATGATGTTAAGTTGGTGTCCAGTTTACACAAGGAGTCAAAAAAGGGTGTGTCTGAGTTTCGAGCAGGTCTCTCTCTGCAACCCACTAGTCATCATCTCATACCCTCCAGCAGGGGACAGCCTGACCCAGA
>TCONS_00031024
GTTGAAAACTCAACATGTTCACATGTAAAGCCTTTAGTTTACAAGTCAGGCTGTGCATCACCAATTATGAAAAATACTCAAGAGAACAGTAATGGGGTTTATGACAAGCCTGGCAGAGAGAAGTTCTTCAGAGGAAGGGAAAAGGTTCAAGATATGAACAGTGATTCAGAGGAAGACATTCTGGTGGATGACTGGTTGACATCCAAACAAGATTTCCTGGACACATCAGATGAAGAGCTGAACGATGACCTTTTGCGTAGCGATGATGAGAACGAAACTATGAGCTCTTCTAAACCAAAACATCAAGCAATTGCACTGCCTCATGTTGTGTGCGAGACATCACACCCTGCTAAAGACCAAGCCATATGTCCTAAAGAAGAGCACACAGAGGTGGACCATGGTGAAGTTTTAGACATCGAAATCAATGCTCCTTCTGGAGATGAATTTCAAGAGCCTGGCGACTATGGTGTCCATCAGCAGGCTAGTGTAAAGGTGGATGTTAAGGATGATGTTAAGTTGGTGTCCAGTTTACACAAGGAGTCAAAAAAGGGTGTGTCTGAGTTTCGAGCAGGTCTCTCTCTGCAACCCACTAGTCATCATCTCATACCCTCCAGCAGGGGACAGCCTGACCCAGAAGAACCCCGCATCAGACCCTGCCGCAGCCCTGAGCCGGCGTTCCCAGGACAGCATATGTTTGATCAACAGCACTGTGCTTCAGTCTTGGACACTAATCCGCTTCTCGCTGGACCTGCTCCCATGGGCTCCATTCAGCCTGGAGGAAATGAGAGTGACCCCTGGAGGCCCAGTCCAGCTTTGCAGGAGCCCAGTGATCTGTCAAAGCCTGGGACTCCCCACCGCGGGCACTGCtctctccagaaacatccatCAGCTCCGTCCGGCTGCCGGTTTAACGCTCCCTCTGGACAGTCACAGAAACCTGCTGTGCTGGTAAGAGCTGTTGCCAGGATGGTGCAGAATGCCAAGCCCATGGCAGTTGCCAGGGGGATGCCCATTACTGCAAGGCAGCCAGCATGTGCCAAGTCCACGATAACTGCCAAAACTCCACCAGCGCCGGGGACGGTGGGAAGAAATGTGGGTCAGAAGGTCAAGGTGGAGCCCCAAACTCCTCGGGCTACTCAAAAACATCCCGCAAAGCCGCTAAACATGACAAACGACAAAGAGCGTGAGGAGTATATTCTCTACATGCAGAAGCTGGAGGAGCAGATGCACCTGAGGAGACAGGTTATCAAACACAAAGAGCGCATGCGATCTTTACGGGCCGCAAACAAGAGGCGTCTGCGACTGGAGCACTTCCAAACTGATCTGTCCACTGCACACTGCTGGAACAACAACCAAAATCAGCAGAAACCACCATGTTTTCTCAGTTCTTACCCTACAAATGCTATGCCCCAGCAGCACTTCTATAATCCCCATGACTGTCTCGTCCTGCAGTGCCATCCACAATTGCATCCCCGGCCTCCACAACAGCAGATGTACCAGATTTTAGTACCCGCATTTCAGCCGCCCTGTCATCAAGCTCTATCGGCTCAAGGGACTCCAGCAGAGGTGCAGTATAATCAGGCTTGTCATTCGGGCACTGGCAGGGTGGTGTTACAGAAGATGGAGCAGTTTGCAGATCACATGAGTCTACAGTACAGTATAGATGAGGCTCGTTTTGCTGGTCTGCAGGACGTTCAGCCAGGAAGGAAGAGAATGATAGAGCAGAGGATATCTGATGGGCCCGTTCCTGCCAAAAGCAAAGTTGTTCAGTACTTTACCACAAGTTCTAGAATTGGGAGTTCAAGCTCTGATTTCAAACCAGCGATGAGTGAAGAAGCAAAATCGGTGACTGAAACGAATCGCCGAACTGTCACCCTGATTCAGGAATCATCTCCACTTTCATTTCTGCAACACGGTCTCAAGCTGACCTGTCCAATACAGAACAAGGTGGCCATCAGTGGAAATGAACACAGCGCTTTCATACCCTTAGGTTCCGGCCTGAAAACACAGTCTGTTACTGCTCAAACCAGCTTCATAGTAAGACTGAACCACTAAGGACATCAAACCCATATTGTGTTCTTTGAGGTTTGTTGACGTTTCTGTTTGGGTTTGaggtttgtcttttttttgtgattgttgAAGACTGTGGTTTAGTAGTCATTGATGATTTAGTTCTTGGTTTCTAATAAATGCAT
>TCONS_00031025
AACATGTTCACATGTAAAGCCTTTAGTTTACAAGTCAGGCTGTGCATCACCAATTATGAAAAATACTCAAGGTAACATAAGGAAACAGGAGCTCCACTAACGGAACGTTGTAAATGGTTGTTGTATGAATGTGGCATTACGCCAGATGGAGAACAGTAATGGGGTTTATGACAAGCCTGGCAGAGAGAAGTTCTTCAGAGGAAGGGAAAAGGTTCAAGATATGAACAGTGATTCAGAGGAAGACATTCTGGTGGATGACTGGTTGACATCCAAACAAGATTTCCTGGACACATCAGATGAAGAGCTGAACGATGACCTTTTGCGTAGCGATGATGAGAACGAAACTATGAGCTCTTCTAAACCAAAACATCAAGCAATTGCACTGCCTCATGTTGTGTGCGAGACATCACACCCTGCTAAAGACCAAGCCATATGTCCTAAAGAAGAGCACACAGAGGTGGACCATGGTGAAGTTTTAGACATCGAAATCAATGCTCCTTCTGGAGATGAATTTCAAGAGCCTGGCGACTATGGTGTCCATCAGCAGGCTAGTGTAAAGGTGGATGT
>TCONS_00031026
AAAATCACTTGCGCCGCGTGAAAAGTTTGATgcaaaaatgctacagtacaagtTTATATTCAATACTAACTGTTAAATGCTACAAGccttttaaacacaaattaacatGGTTTCTTCGCTTCACAGAGAACAGTAATGGGGTTTATGACAAGCCTGGCAGAGAGAAGTTCTTCAGAGGAAGGGAAAAGGTTCAAGATATGAACAGTGATTCAGAGGAAGACATTCTGGTGGATGACTGGTTGACATCCAAACAAGATTTCCTGGACACATCAGATGAAGAGCTGAACGATGACCTTTTGCGTAGCGATGATGAGAACGAAACTATGAGCTCTTCTAAACCAAAACATCAAGCAATTGCACTGCCTCATGTTGTGTGCGAGACATCACACCCTGCTAAAGACCAAGCCATATGTCCTAAAGAAGAGCACACAGAGGTGGACCATGGTGAAGTTTTAGACATCGAAATCAATGCTCCTTCTGGAGATGAATTTCAAGAGCCTGGCGACTATGGTGTCCATCAGCAGGCTAGTGTAAAGGTGGATGTTAAGGATGATGTTAAGTTGGTGTCCAGTTTACACAAGGAGTCAAAAAAGGGTGTGTCTGAGTTTCGAGCAGGTCTCTCTCTGCAACCCACTAGTCATCATCTCATACCCTCCAGCAGGGGACAGCCTGACCCAGAAGAACCCCGCATCAGACCCTGCCGCAGCCCTGAGCCGGCGTTCCCAGGACAGCATATGTTTGATCAACAGCACTGTGCTTCAGTCTTGGACACTAATCCGCTTCTCGCTGGACCTGCTCCCATGGGCTCCATTCAGCCTGGAGGAAATGAGAGTGACCCCTGGAGGCCCAGTCCAGCTTTGCAGGAGCCCAGTGATCTGTCAAAGCCTGGGACTCCCCACCGCGGGCACTGCtctctccagaaacatccatCAGCTCCGTCCGGCTGCCGGTTTAACGCTCCCTCTGGACAGTCACAG
>TCONS_00031027
CGCGTGAAAAGTTTGATgcaaaaatgctacaAGAACAGTAATGGGGTTTATGACAAGCCTGGCAGAGAGAAGTTCTTCAGAGGAAGGGAAAAGGTTCAAGATATGAACAGTGATTCAGAGGAAGACATTCTGGTGGATGACTGGTTGACATCCAAACAAGATTTCCTGGACACATCAGATGAAGAGCTGAACGATGACCTTTTGCGTAGCGATGATGAGAACGAAACTATGAGCTCTTCTAAACCAAAACATCAAGCAATTGCACTGCCTCATGTTGTGTGCGAGACATCACACCCTGCTAAAGACCAAGCCATATGTCCTAAAGAAGAGCACACAGAGGTGGACCATGGTGAAGTTTTAGACATCGAAATCAATGCTCCTTCTGGAGATGAATTTCAAGAGCCTGGCGACTATGGTGTCCATCAGCAGGCTAGTGTAAAGGTGGATGTTAAGGATGATGTTAAGTTGGTGTCCAGTTTACACAAGGAGTCAAAAAAGGGTGTGTCTGAGTTTCGAGCAGGTCTCTCTCTGCAACCCACTAGTCATCATCTCATACCCTCCAGCAGGGGACAGCCTGACCCAGAAGAACCCCGCATCAGACCCTGCCGCAGCCCTG
>TCONS_00031028
GGAGTATATTCTCTACATGCAGAAGCTGGAGGAGCAGATGCACCTGAGGAGACAGGTTATCAAACACAAAGAGCGCATGCGATCTTTACGGGCCGCAAACAAGAGGCGTCTGCGACTGGAGCACTTCCAAACTGATCTGTCCACTGCACACTGCTGGAACAACAACCAAAATCAGCAGAAACCACCATGTTTTCTCAGTTCTTACCCTACAAATGCTATGCCCCAGCAGCACTTCTATAATCCCCATGACTGTCTCGTCCTGCAGTGCCATCCACAATTGCATCCCCGGCCTCCACAACAGCAGATGTACCAGATTTTAGTACCCGCATTTCAGCCGCCCTGTCATCAAGCTCTATCGGCTCAAGGGACTCCAGCAGAGGACGTTCAGCCAGGAAGGAAGAGAATGATAGAGCAGAGGATATCTGATGGGCCCGTTCCTGCCAAAAGCAAAGTTGTTCAGTACTTTACCACAAGTTCTAGAATTGGGAGTTCAAGCTCTGATTTCAAACCAGCGATGAGTGAAGAAGCAAAATCGGTGACTGAAACGAATCGCCGAACTGTCACCCTGATTCAGGAATCATCTCCACTTTCATTTCTGCAACACGGTCTCAAGCTGACCTGTCCAATACAGAACAAGGTGGCCATCAGTGGAAATGAACACAGCGCTTTCATACCCTTAGGTTCCGGCCTGAAAACACAGTCTGTTACTGCTCAAACCAGCTTCATAGTAAGACTGAACCACTAAGGACATCAAACCCATATTGTGTTCTTTGAGGTTTGTTGACGTTTCTGTTTGGGTTTGaggtttgtcttttttttgtgattgttgAAGACTGTGGTTTAGTAGTCATTGATGATTTAGTTCTTGGTTTCTAATAAATGCATAAACT

Function

symbol description
rbm33b Orthologous to human RBM33 (RNA binding motif protein 33).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-276 Orthologous to human RBM33 (RNA binding motif protein 33).

Ensembl:

ensembl_id ENSDARG00000094896

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031023 False 593 mRNA 0.46 7 29995590 30025085
TCONS_00031024 False 2195 mRNA 0.49 13 29996650 30047632
TCONS_00031025 False 567 mRNA 0.43 6 29996661 30002958
TCONS_00031026 False 977 mRNA 0.49 7 29997043 30026612
TCONS_00031027 False 616 mRNA 0.47 7 29997057 30025117
TCONS_00031028 True 890 mRNA 0.46 5 30032303 30047637

Neighbor

gene id symbol gene type direction distance location
XLOC_015514 en2b coding upstream 15634 29976419 ~ 29979956 (+)
XLOC_015513 htr5aa coding upstream 55071 29925561 ~ 29940519 (+)
XLOC_015512 si:ch211-207d6.2 coding upstream 99018 29795833 ~ 29896572 (+)
XLOC_015511 NA coding upstream 268133 29712210 ~ 29727457 (+)
XLOC_015510 ptf1a coding upstream 283829 29710857 ~ 29711761 (+)
XLOC_015516 NA coding downstream 25042 30072679 ~ 30089989 (+)
XLOC_015517 dnajb6a coding downstream 55494 30103131 ~ 30116467 (+)
XLOC_015518 BX510360.1 coding downstream 78777 30126414 ~ 30126936 (+)
XLOC_015519 kcnb2 coding downstream 97342 30144979 ~ 30177469 (+)
XLOC_015520 rdh10b coding downstream 134794 30182431 ~ 30186307 (+)
XLOC_015503 NA non-coding upstream 1572103 28393943 ~ 28423487 (+)
XLOC_015502 NA non-coding upstream 1645143 28245460 ~ 28350447 (+)
XLOC_015501 NA non-coding upstream 1800982 28194138 ~ 28194608 (+)
XLOC_015500 CR925777.1 non-coding upstream 1956965 27975554 ~ 28038625 (+)
XLOC_015521 NA non-coding downstream 149733 30197370 ~ 30197741 (+)
XLOC_015523 CR788254.2 non-coding downstream 221669 30269306 ~ 30270163 (+)
XLOC_015524 CR788254.1 non-coding downstream 228580 30276217 ~ 30277062 (+)

Expression


Co-expression Network