XLOC_015520 (rdh10b)


Basic Information

Item Value
gene id XLOC_015520
gene name rdh10b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30182431 ~ 30186307 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031035
atattctAGTTATTTTGCTATTAAGCATTTTTCTGCTCAcgtcaatatttaataattaatataaatccTGTAAATATGCGCTCAGCCTCGTAAAGGTGTACacgcatttgacgcagaagttttGGTTACTTTGCATAACAGGCGGACACACGCGTGGAAAGTTGTGAAGCCCAGTGAGTTGGAGCATATTTAAAGAGCTGGAGCTCCTCAAAAACACATTGTTTTGGGCAGATTTCGTGGATGCTGAGGGGTGCAGATTTTGGTTAAACAGGGTGTTTCTTTTATCACGTTTGCGGTTTGATTTCTTATCTAGTTTCATTTCTTGTcgatttagtttgtttagtttgtcGAGTTGAAACACCATGAATATCGCCACCGAGTTGTTCGTGGTCACTTTTAAAATAATCTGGTCGTTCGTACTGGCCGGTGCTAAATGGTTTATTCGTCCACGGGAGAAGAGTGTGGAGGGCCAAGTGTGCGTTATTACCGGAGCTGGAAGCGGTCTCGGGCGGCTGTTTGCGCTCGAGTTTGCCCGCAGACGAGCGACCCTTGTGCTGTGGGACATCAACCGACAGAGTAACGAAGAAACTGCAGAGATGGCGCGAGAAATCTACCGACAATTGAAGCCCTCCACCGGGTCTTCAGATAGTGTTCAGGAATTGCCTCTTCTCCAGCCGAAGGTTTACACGTATATGTGTGATGTCAGTAAACGTGAGAGTGTGTATTTGACTGCAGAGAAGGTTCGCAGTGAGGTGGGAGACATTGACCTGCTTATCAACAATGCTGGAGTCGTGTCAGGACGACATCTTCTTGACTGCCCAGATGAGCTTATCGAAAGGACAATGATGGTCAACTGCCATGCTCACTTCTGGACTACAAAGGCGTTCCTGCCAAAAATGCTGGAGCTGAATCACGGACACATTGTAACTGTAGCAAGCTCCTTGGGGTTGTTTACAACAGCTGGTGTGGAGgacTATTGCGCTAGCAAGTTTGGAGCCATAGGCTTTCATGAGTCTTTGAGCCATGAGCTGAAAGCAGCTGATAAGGATGGGATAAAGATGACTCTCGTCTGTCCTTTTTTAGTTGACACTGGCATGTTTGAAGGCTGCAAAATTAGgaaagaaaTGGCTCCATTTTTCCCTCCACTGAAGCCAGAGTACTGTGTAAAACAGGCTATGAGAGCCATACTAACAGACCAGCCAATGATCTGCACCCCTCGGGTCATGTACATGGTCACCTTCATGAAAACTGTTTTGCCGTTTGATGCCATTGTGTGCATGTACAAATTTATTGGGGCTGATAAGTGCATGTACCCTTTTCTGGCTCAACGCAAGGAGTCGACGAACAACAACGAATCAAAGACTGGAATCTAATTGGTTCTGATTGATGAATTCTGTGTAGTTCCTCTGGAACGATGAAAGCTGTACATTTACAAGTCCTTCCTAATGACATTTTACTGCCATCTTTTGAGATTGCAATAATGACTGAGTAGAGATTTAACTTTAATTATGAAATGATGTGTTACTGTAAGATTATATAAGAAGGTCTGTCACCTATTTATGTGTACACATTTTATTTGTTGTGTGTTGTTGCTTTCCTTTCAACATTCTATGACTTTGTCACTTTAGAGGTTTGATCCTCCCAATAATGAAGTGCAATATTGAAAGTATTTCCTGTTGCCTTTTGTGGTCTTGATGTGTTGATGATTTGGATGATGCCAATGATTGACATGAGATCATCAAAACATGCCATAAGTGCATATTcaataaatgatgttcaaatgAA

Function

symbol description
rdh10b Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be involved in retinol metabolic process. Predicted to act upstream of or within retinoic acid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in lipid droplet. Is expressed in several structures, including axis; notochord; pleuroperitoneal region; tail bud; and yolk syncytial layer. Orthologous to human RDH10 (retinol dehydrogenase 10).

GO:

id name namespace
GO:0042572 retinol metabolic process biological_process
GO:0002138 retinoic acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005811 lipid droplet cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0052650 NADP-retinol dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030909-7 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be involved in retinol metabolic process. Predicted to act upstream of or within retinoic acid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in lipid droplet. Is expressed in several structures, including axis; notochord; pleuroperitoneal region; tail bud; and yolk syncytial layer. Orthologous to human RDH10 (retinol dehydrogenase 10).

Ensembl:

ensembl_id ENSDARG00000012369

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031035 True 1785 mRNA 0.43 6 30182431 30186307

Neighbor

gene id symbol gene type direction distance location
XLOC_015519 kcnb2 coding upstream 4962 30144979 ~ 30177469 (+)
XLOC_015518 BX510360.1 coding upstream 55495 30126414 ~ 30126936 (+)
XLOC_015517 dnajb6a coding upstream 65964 30103131 ~ 30116467 (+)
XLOC_015516 NA coding upstream 92442 30072679 ~ 30089989 (+)
XLOC_015515 rbm33b coding upstream 134794 29995590 ~ 30047637 (+)
XLOC_015521 NA coding downstream 11063 30197370 ~ 30197741 (+)
XLOC_015522 tmem70 coding downstream 63670 30249977 ~ 30252347 (+)
XLOC_015523 CR788254.2 coding downstream 82999 30269306 ~ 30270163 (+)
XLOC_015524 CR788254.1 coding downstream 89910 30276217 ~ 30277062 (+)
XLOC_015525 CR788254.3 coding downstream 91027 30277334 ~ 30280504 (+)
XLOC_015511 NA non-coding upstream 454974 29712210 ~ 29727457 (+)
XLOC_015503 NA non-coding upstream 1758944 28393943 ~ 28423487 (+)
XLOC_015502 NA non-coding upstream 1831984 28245460 ~ 28350447 (+)
XLOC_015527 NA non-coding downstream 143098 30329405 ~ 30334513 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_10736615_10738593 RDH10, RDH10B coding CI01000004 null 10736615 ~ 10739026 (+)