XLOC_015525 (CR788254.3)


Basic Information

Item Value
gene id XLOC_015525
gene name CR788254.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30277334 ~ 30280504 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031040
GGGCTGCTAATTTTTAGACTTTATTTTTAGAATCTATTTTGTTAGATTTGGAAGACGTGACAAGACACACACAGtaggtttcttttcttttctttttttttttgaagcagaTTTAGTCTTattaaagcaaaaatattttctgtataatcatttttatttaatttttttgccattttgatAGTAGAAAGATGGATGTaaatcagggatgcccaaacctggtcctggagggccagtgtcctgcagattttagctccagcctgcctcaacacacctgcatggatctTTCTAGAATACTcagtaagagtttgattagctaggCGTGTGagtttggaactaaactttggagGACACTGAccccccaggaccgagtttgggcacccctgatctatatgTACACAAATTTATGAAATGACCATATTAACTAAAAGATTAGtctaattattgatttttttattatttgtttttgatttgtaaATAATCCCTGTGTTTTTCTTCTATTCCAGAAGTTTTAAGCCATAAATTCCCATCAGTGCCAATCAAGTGAACAGCAAGGagagattatttgttttaaatgtattaaatatctgCATATTTGTATGTCAGCATATGTTTGAATGATATGTATACAGATACAATTGCAAATAAACGTCCTTTGTTCCAGTTTCCTGTTCTCACAGCTAGCATTTACCATGACAAAAGTGTGGGTCTCAAACTGAATCTGTCGTAAAACAATGCCATACATTGTTAAAGGGAAGAACTGTGTTAGAGAATGGTTACTTTGAATTTTGTTCTGTTTAATTTCTTCCCAGTTTGTGCATTACCATTCAGAAGGGGAGTTATTTTTCCTCTGGTGTTGATTGGTAATAGACATGGCGCTTTGGTGTCCAtcggcttttctttttttaattacattatcttGTATGTCATTTGTGATTGCAGAGAAAAGATTATTATGCTCATCAGAGCACATTAGTTTTTGGTACACCTTTGATGGTCCATTGTATTACCTGTCAATGACCATTTCCCCCTGCTCTCAAGGAGTGTCCATGTACACTGTAAATTATACACTAATCCCAATGTTCACAATCACCCGTTTTGGATTTCATGGTATCGTTTATTACAAAGGTCAGATGTGGTTGGAGCATGACCAGCAAGAAGTTCTTTGTGAGGATTACAAAATATGTTACATCATTAAAGGAGaAACACTGAATGAGACCTTTCCACTTTATATAACAAAATTTGATGGCCCTGTGGGTGATTATCAGTTTTTTATTACATTGTACATCACTGATGACCTAGACaacaaaatatctttaaaattcAACATCACAATGGAAATAAAAAGTGATGGCAATAAGAACAACCCTTTTTTCCCTCAACTCGGAGGATTGTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117752

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031040 True 1394 lncRNA 0.35 5 30277334 30280504

Neighbor

gene id symbol gene type direction distance location
XLOC_015524 CR788254.1 coding upstream 272 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 coding upstream 7171 30269306 ~ 30270163 (+)
XLOC_015522 tmem70 coding upstream 24987 30249977 ~ 30252347 (+)
XLOC_015521 NA coding upstream 79593 30197370 ~ 30197741 (+)
XLOC_015520 rdh10b coding upstream 91027 30182431 ~ 30186307 (+)
XLOC_015526 si:dkey-82k12.13 coding downstream 940 30281444 ~ 30286249 (+)
XLOC_015527 NA coding downstream 48901 30329405 ~ 30334513 (+)
XLOC_015528 NA coding downstream 85297 30365801 ~ 31460329 (+)
XLOC_015529 pi15b coding downstream 88296 30368800 ~ 30376396 (+)
XLOC_015530 crispld1b coding downstream 99146 30379650 ~ 30395993 (+)
XLOC_015518 BX510360.1 non-coding upstream 150398 30126414 ~ 30126936 (+)
XLOC_015516 NA non-coding upstream 187345 30072679 ~ 30089989 (+)
XLOC_015544 NA non-coding downstream 795072 31075576 ~ 31084080 (+)
XLOC_015545 CT955962.3 non-coding downstream 819940 31100444 ~ 31217778 (+)
XLOC_015546 CT955962.2 non-coding downstream 820584 31101088 ~ 31101573 (+)

Expression


Co-expression Network