XLOC_015534 (march6)


Basic Information

Item Value
gene id XLOC_015534
gene name march6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30489846 ~ 30526721 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031052
CAAACATGTTCAGCCGAGCAGTAATGTAGTCGGCCAACAAGTAGCTGGATCAGCGCTATCCGCGAGCACTACACAAAGAAAAGGCTTCCAGTCCGGGGTTATGCGGCGTTCATGCTTGGATCGATGTCGTCATGCTGTATTTTAGCCTGGTTGTGAGCTGATAATTGTGTTTTGTTTCGCGGCGAGTGTTATGTGTTGACTGTAAAGAGGACAGTGCGTCACCGTTCAAGATGGACACTGCCGAAGAAGCTGATATATGTAGGGTGTGTCGATCTGAGGGAACCCAAGACAAACCCCTCTACCATCCCTGTGTGTGTACTGGAAGTATTAAGTTCATCCACCAAGAATGCTTGGTGCAGTGGCTTAAACACAGCAGAAAAGAATACTGCGAATTATGCAAGCACAGATTTGCTTTCACGCCAATCTACTCTCCAGACATGCCTTCACGGCTCCCAGTGCAGGACATTTTCGCAGGACTGGTCACCAGTATAGGCACAGCAATCCGATACTGGTTTCATTACACGCTTGTTGCCTTTGCTTGGCTGGGGGTTGTACCATTAACAGCATGTCGCATCTATAAGTGTCTGTTCACTGGATCTGTAAGCTCGCTCCTGACTCTGCCATTAGACATGCTCTCCACAGAGAACTTGTTGGCCGACTGCCTGCAGGGCTGCTTTGTGGTGACCTGCACCCTCTGCGCCTTCATCAGTCTGGTGTGGCTGCGGGAGCAGATTGTTCACGGTGGAGCCCCTTTATGGTTGGAGCAGAACCAGCAGCAACCTGCCAATGCCGCAGGACCGCCCAATGAGGCCCCTGGCCAGGGTAATGGTGGTGCTGAGAACCAGCCCATGCCAGCTCCGGCTGAACCTCCAGCAGAAAACGCTGCAGCTGCTGAGGCTCCTGACCTCCCCGCTGATCCTGCTGAAGAGATGGAGCTTGATaatgaggatgaggatgatggAGGAGCTGAAGATGTGGCAGATGCTAACAATGGAGCACAAGaTGATATGAACTGGAATGCTCTGGAATGGGACCGTGCAGCTGAAGAGCTCACTTGGGAAAGGATGCTTGGGCTTGATGGGTCTCTGGTTTTCCTGGAGCATGTGTTCTGGGTGGTCTCACTCAACACTCTCTTCATTTTGGTGTTTGCTTTCTGCCCCTACCACATTGGCCACTTCTCAGTGGTTGGACTTGGTTTTGAAGAATATGTTCGTGCTTCACACTTTGAGGGGCTCATCACCACTATTGTCGGATATGTCCTCTTAGCCATCACACTCATTGTGTGTCATGGATTAGCAGCGCTGGTGAGATTTCAAAGATCACGCCGCTTGTTAGGCGTTTGCTACATAGTTGTAAAGGTGTCTCTTCTAGTAGTCGTAGAGATTGGTGTGTTCCCCCTCATCTGCGGCTGGTGGCTTGATATCTGCTCTTTGGAAATGTTTGATGCTTCATTAAAAGACAGAGAGTTGAGTTTCGAGTCAGCACCAGGTACCACTATGTTTCTTCATTGGCTGGTGGGGATGGTCTACGTCTTCTATTTTGCATCTTTTATTCTTCTACTTCGAGAGGTACTGAGGCCTGGAGTATTATGGTTTCTCAGAAATCTGAATGATCCAGATTTCAACCCTGTGCAGGAAATGATTCACCTGCCAATATACAGACACCTGAGACGATTCATATTATCTGTGgttgtgtttggCTCAATTGTTCTTCTCATGTTGTGGCTTCCTATCCGGATAATCAAGCACATCTTTCCTTCATTTCTACCCTACAATGTGATGCTTTACAGTGACGCTCCAGTGAGTGAGTTGTCTCTGGAGCTGCTGTTGTTGCAGGTCGTTCTTCCTGCACTGTTGGAACAAGGACACACACGGCAGTGGCTCAAAGGTCTAGTGCGAGCCTGGACCGTGACCGCTGGATACTTGCTTGATTTGCACTCGTACTTGCTGGGAGACCAGGAAGACAACGAGAACAATGCCAACCAGCAAGCCAACAACAATAACCAACAGGCCCGTAACAATGCTATTCCTGTGGTGGGAGAAGGGCTGCACGCTGCCCACCAGGCTATACTGCAGCAGGGCGGCCCGGTAGGATTCCAACCCTATCATCGGCCTATGAAATTTCCTCTAAGGATTGTCTTGCTGATATTGTTCATGTGTGTGACGCTACTTTTGGCCAGTTTAGTGTGTCTTACGTTACCAGTATTTACAGGACGCTGGCTGATGTCCTTCTGGACGGGCAGTGCTAAGATCCACGAGCTGTACACTGCAGCATGTGGCCTCTATGTGTGCTGGCTCTCCATCAGAGCGATCACCGTACTGCTGGCCTGGATGCCTCAGGGTCGCAGAGTCATCCTGCTCAAGATTCAGGAGTGGACCCTCATGATTATGAAGACCCTGATTGTGGCTGTGCTGTTGGCTGGAGTGATTCCTCTGCTCTTGGGACTGCTGTTTGAGCTGGTGATTGTAGCTCCTCTCAGAGTGCCGCTGGATCAGACTCCTTTGTTCTACCCCTGGCAGGACTGGGCTTTAGGAGTGCTTCATGCCAAAATCATTGCTGCCATCACCCTCATGGGTCCCCAGTGGTGGCTGAAGACCGTTATTGAGCAGGTGTATGCCAATGGAATCCGGAACATTGACCTTCATTTCATCATCAGGAAGCTAGCGGCTCCGGTCATTGCTGTATTGCTGCTGTCTCTCTGCATCCCTTATGTGATTGCTGTGGGCATCGTGCCCCTGCTTGGGGTCACGATGGAGATGCAGAATCTTGTGCAGAGGAGAATCTACCCCTTTCTCCTTATGGTGGTGTTTCTGATGGGGATCCTCTCTTTTCAAATCCGACAATTCAAGCGCCTTTATGAGCACATCAAGAATGACAAGTACCTGGTTGGACAGAGACTAGTGAACTATGAACGGAAAGCTGGCAAAGCCAGTGCCAGCACACACAGCAGTTCAGTTCAGGAGTAAAGAGTTGGATTGAGCATGTGCAAATGACTGAATGAGCCTTTCTCTCCTGCTCCCTGTGCTTACCTGTGATGTGTACATTCAAACATCCATCACATTCACTAAAAGACTCCACAAACGAACCTCTGGTCTCTCTGAGCCTGCCAGCAAAAAGGGGCGAAAGAGCCATGTACATAAACAGGCCGGCAGCCAACCAACcatggatttaaaaaaacaatgtctcactcctaaaaaaagaaaaaaaaaatgaagtatgtgtattaatttattaaatctaGTTGTTACTTTGTTTGTGCTAAGACTCGACCCTCTTGGGTCTTTCATCACCCCTCATGGAGAGGCCGGTCAGACTTCAGGTCTCTGAACAAACGTCTGGGTCATAATGGAGCTGGACTGTCGCATtagtacttttgtttttttatttattagttctgAGTTTTCAATGAAATTATATGATCTTTAAGTTTTCAAATGAGAGGCTTTTGTTGATTTGATGCTATGGATAGTGTGTCTTACGTTAATTTCCCAATGCTTTACCCTCTCTGATATTATGTGCAGAGCTGATGAGGCGGGGTTTAATGGTTAagccacactcatacacttccgGTCACATGGGAAAGAGGGAATTTCATTCAGCAGCAGTTTGCGCGGGACTGTTGTTGACCAGTTTAAGAATATTGAAGCACAGAGTCAGTATCTAGCAGCCGAACGCCTAGATTGCCGGTAGTGTTTATGGCTCACAGTGAGCTGCAAAGCCTACCTCTGTCTGCTAGCTCTTCTTTAACTCTGGAAAAAGTCCTTTGAGTAGCTTAGAAGAGTGCTAATCGTGTCAGTGGTTGAGCTAGCATATTTGTTTGCTGTTCAAGTTGATATTGACCGTTGTATGTCCGTCTCGTTCTCAGCATGGCCTACTCAACACTTTCTCATTAACGTAACACTGGCACGTACACAAGTTGCActtttttagaaattaaaaaataaaagaaaagagaaGCATCTTTTAAGAGCAGCAATAGTTCGGAAACCCTTTAGACCAAATTTTTTAACTCGCTATAATTCATCAAACTGATCAAATCGGCTGAAGTGTATGGTTTATTATGAGTCTTGGTGGGAGAGGCATCTGTTTTATGTCTGTAGATAAAGAGGAGATCCACAacacacatttgtaaataatgtaactTTACGATTGTTCGTAgcagagtattttttttttcttcatttcagGTTTGCTGCGTCTGTTACGAGTTCACGATTCCCTGAAGGGTTTGTCTCAGACGGCTTTAGACATAGTGTTAATCAGCGCTGAGATTCTATAAGTGACCTTATAGTATCTTATTACACTGAAACTGATACTGTATGCTTCTTGATAGCTTGCGCTCCTCTGGAAGGCAAATGTTCTATTTTTATATGTGCAACTAGTGACACCGTTTTCATCTTTGATCGTCCATCGATTTGATTTCCTctcaagttttttgttttgttttcctgagGTCAGCTAGAATCCAGGTTAAGGTAGTGGTCCAGAACTAAACTCCTTTGTTTGTCTGGTTTACTAAGCCTTTTCTTTTTTCATAGCATGTTTGTGTGAGAAATATTCAGTATTCTGAATGTTTTCAAACCTTCTGCTGGGAGGCTCTCGCTGTAACAATTACATCCTCAAAAAggcagacctttttttttttgtttgttttttgaaaacttttattacaaatattaaatcaCAAAGTGTGGTATGCA
>TCONS_00031053
GGGCGGCCCGGTAGGATTCCAACCCTATCATCGGCCTATGAAATTTCCTCTAAGGATTGTCTTGCTGATATTGTTCATGTGTGTGACGCTACTTTTGGCCAGTTTAGTGTGTCTTACGTTACCAGTATTTACAGGACGCTGGCTGATGTCCTTCTGGACGGGCAGTGCTAAGATCCACGAGCTGTACACTGCAGCATGTGGCCTCTATGTGTGCTGGCTCTCCATCAGAGCGATCACCGTACTGCTGGCCTGGATGCCTCAGGGTCGCAGAGTCATCCTGCTCAAGATTCAGGAGTGGACCCTCATGCTTCAAGACAGCTCGTGTTTGAAGAATggagtcacatgcattgctcagATTATGAAGACCCTGATTGTGGCTGTGCTGTTGGCTGGAGTGATTCCTCTGCTCTTGGGACTGCTGTTTGAGCTGGTGATTGTAGCTCCTCTCAGAGTGCCGCTGGATCAGACTCCTTTGTTCTACCCCTGGCAGGACTGGGCTTTAGGAGTGCTTCATGCCAAAATCATTGCTGCCATCACCCTCATGGGTCCCCAGTGGTGGCTGAAGACCGTTATTGAGCAGGTGTATGCCAATGGAATCCGGAACATTGACCTTCATTTCATCATCAGGAAGCTAGCGGCTCCGGTCATTGCTGTATTGCTGCTGTCTCTCTGCATCCCTTATGTGATTGCTGTGGGCATCGTGCCCCTGCTTG

Function

symbol description
march6 Predicted to enable zinc ion binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 3. Orthologous to human MARCHF6 (membrane associated ring-CH-type finger 6).

GO:

id name namespace
GO:0030433 ubiquitin-dependent ERAD pathway biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-070912-530 Predicted to enable zinc ion binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in familial adult myoclonic epilepsy 3. Orthologous to human MARCHF6 (membrane associated ring-CH-type finger 6).

Ensembl:

ensembl_id ENSDARG00000076066

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031052 False 4700 mRNA 0.46 26 30489846 30526721
TCONS_00031053 True 713 mRNA 0.52 7 30513887 30520045

Neighbor

gene id symbol gene type direction distance location
XLOC_015533 atpsckmt coding upstream 6637 30480907 ~ 30483209 (+)
XLOC_015532 neto1 coding upstream 9391 30463825 ~ 30480455 (+)
XLOC_015531 socs6b coding upstream 59501 30423428 ~ 30430345 (+)
XLOC_015530 crispld1b coding upstream 93853 30379650 ~ 30395993 (+)
XLOC_015529 pi15b coding upstream 113450 30368800 ~ 30376396 (+)
XLOC_015535 ankrd33bb coding downstream 5005 30531726 ~ 30548220 (+)
XLOC_015536 si:dkey-94e7.2 coding downstream 194349 30721070 ~ 30726420 (+)
XLOC_015537 tcea1 coding downstream 212959 30739680 ~ 30748070 (+)
XLOC_015538 atp6v1h coding downstream 260052 30786773 ~ 30846927 (+)
XLOC_015539 oprk1 coding downstream 352143 30878864 ~ 30886567 (+)
XLOC_015527 NA non-coding upstream 155333 30329405 ~ 30334513 (+)
XLOC_015525 CR788254.3 non-coding upstream 209342 30277334 ~ 30280504 (+)
XLOC_015524 CR788254.1 non-coding upstream 212784 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 non-coding upstream 219683 30269306 ~ 30270163 (+)
XLOC_015521 NA non-coding upstream 292105 30197370 ~ 30197741 (+)
XLOC_015544 NA non-coding downstream 548855 31075576 ~ 31084080 (+)
XLOC_015545 CT955962.3 non-coding downstream 573723 31100444 ~ 31217778 (+)
XLOC_015546 CT955962.2 non-coding downstream 574367 31101088 ~ 31101573 (+)
XLOC_015547 CT955962.1 non-coding downstream 581208 31107929 ~ 31108414 (+)
XLOC_015549 NA non-coding downstream 764925 31291646 ~ 31292603 (+)

Expression


Co-expression Network