XLOC_015540 (chmp5a)


Basic Information

Item Value
gene id XLOC_015540
gene name chmp5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30894595 ~ 30901120 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031067
ATTATGGTGTGTATTCCACGACCAACCGGAAGAAGCGCGTTGTGGTGGTCGGCATTTAAATACCTCTACAAAGCAAATAAGTGTCATTCCCATATAAATATGAACCGAATTTTCGGTCGGAGCAAACAAGCGGCGTCTCCCAACCTTTCTGACTGCATAGGCAATGTGGACACGAGGATTGAGTCAATCGACAAGAAAATAGCGAGAATCGATGCCGAGCTCATGAAGTATAAGGACCAGATGAAGAAGATGAGGGATGGACCCTCAAAAAATACAGTGAAGCAGAAGGCAATGAGAGTGCTGAAACAGAAGAGAATGTATGAGGGCCAAAGAGATCAACTTTCTCAACAGTCTTTTAATATGGAACAAGCCAACTATACAATCCAGTCTTTAAGGGACACCAAAACAACAGTGGAAGCTATGAAGATTGGAGCAAAAGAAATGAAGAAAGCATACAAACAAGTGAAGATGGATCAGATTGAAGACCTGCAGGATCAACTGGAGGACATGATGGAAGAGGCCAACGAAGTACAGGAAGCTCTCAGTCGCAGCTACGGCACACCAGAGATCGACGAGGATGAACtggaagcagAACTGGATGCTCTGGGAGATGAGTTGCTGCTGGATGATGATAGCTCTTATTTAGACGAAGCCTCATCTGCTCCCTCTATTCCTGAAGGAATGCCCAGTGACACCAAAACTAATAAGGATGGCGTTCTGGTGGATGAGTTTGGCCTGCCACAGATCCCTGCTACATAAGAATCTGTTCTcagaggagttttttttttttttttttttggtatggtGGAAGAAGTGTTTTTGTGTTGGTGTTTAAGTTTTCTTGCATTCATTACCCAGTCTAGCACATGGCTTTGTAACTATAATGTGTTGAACATAATATTCTAAGTTTATTTAGAATTCAACATTCAATTTTGCAGTCacttttagtttttagttatcCAAAAAAGGCTCATTGCATGTGGGTCAAAGacaaaaggcaaggcaaggcaaggctagtgtatttatatagcacatttc
>TCONS_00031068
ATGAACCGAATTTTCGGTCGGAGCAAACAAGCGGCGTCTCCCAACCTTTCTGACTGCATAGGCAATGTGGACACGAGGATTGAGTCAATCGACAAGAAAATAGCGAGAATCGATGCCGAGCTCATGAAGTATAAGGACCAGATGAAGAAGATGAGGGATGGACCCTCAAAAAATACAGTGAAGCAGAAGGCAATGAGAGTGCTGAAACAGAAGAGAATGTATGAGGGCCAAAGAGATCAACTTTCTCAACAGTCTTTTAATATGGAACAAGCCAACTATACAATCCAGTCTTTAAGGGACACCAAAACAACAGTGGAAGCTATGAAGATTGGAGCAAAAGAAATGAAGAAAGCATACAAACAAGTGAAGATGGATCAGATTGAAGACCTGCAGGATCAACTGGAGGACATGATGGAAGAGGCCAACGAAGTACAGGAAGCTCTCAGTCGCAGCTACGGCACACCAGAGATCGACGAGGATGAACtggaagcagAACTGGATGCTCTGGGAGATGAGTTGCTGCTGGATGATGATAGCTCTTATTTAGACGAAGCCTCATCTGCTCCCTCTATTCCTGAAGGAATGCCCAGTGACACCAAAACTAATAAGGTGCCAACTATCGCCACTTTAAATGCAGAAGCATTTGGTCAAACtctgattgaagattaccaaaactaa

Function

symbol description
chmp5a Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and vesicle budding from membrane. Predicted to act upstream of or within vacuolar transport. Predicted to be active in multivesicular body. Orthologous to human CHMP5 (charged multivesicular body protein 5).

GO:

id name namespace
GO:0006900 vesicle budding from membrane biological_process
GO:0007034 vacuolar transport biological_process
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway biological_process
GO:0005771 multivesicular body cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-60 Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and vesicle budding from membrane. Predicted to act upstream of or within vacuolar transport. Predicted to be active in multivesicular body. Orthologous to human CHMP5 (charged multivesicular body protein 5).

Ensembl:

ensembl_id ENSDARG00000038855

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031067 False 1038 mRNA 0.42 8 30894595 30901120
TCONS_00031068 True 678 mRNA 0.44 8 30894694 30899674

Neighbor

gene id symbol gene type direction distance location
XLOC_015539 oprk1 coding upstream 8028 30878864 ~ 30886567 (+)
XLOC_015538 atp6v1h coding upstream 47668 30786773 ~ 30846927 (+)
XLOC_015537 tcea1 coding upstream 146525 30739680 ~ 30748070 (+)
XLOC_015536 si:dkey-94e7.2 coding upstream 168175 30721070 ~ 30726420 (+)
XLOC_015535 ankrd33bb coding upstream 346375 30531726 ~ 30548220 (+)
XLOC_015541 bag1 coding downstream 2949 30904069 ~ 30908300 (+)
XLOC_015542 myom1a coding downstream 15068 30916188 ~ 30959913 (+)
XLOC_015543 lpin2 coding downstream 59231 30960351 ~ 30984508 (+)
XLOC_015544 NA coding downstream 174456 31075576 ~ 31084080 (+)
XLOC_015545 CT955962.3 coding downstream 199324 31100444 ~ 31217778 (+)
XLOC_015527 NA non-coding upstream 560082 30329405 ~ 30334513 (+)
XLOC_015525 CR788254.3 non-coding upstream 614091 30277334 ~ 30280504 (+)
XLOC_015524 CR788254.1 non-coding upstream 617533 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 non-coding upstream 624432 30269306 ~ 30270163 (+)
XLOC_015521 NA non-coding upstream 696854 30197370 ~ 30197741 (+)
XLOC_015546 CT955962.2 non-coding downstream 199968 31101088 ~ 31101573 (+)
XLOC_015547 CT955962.1 non-coding downstream 206809 31107929 ~ 31108414 (+)
XLOC_015549 NA non-coding downstream 390526 31291646 ~ 31292603 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_11163514_11166543 NA coding CI01000004 null 11162918 ~ 11166543 (+)