XLOC_015543 (lpin2)


Basic Information

Item Value
gene id XLOC_015543
gene name lpin2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 30960351 ~ 30984508 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031075
CCGCTGCCTGACCGGTTCGCGGTGGTTGTACCGTAGAAGTGACCCTCCGAAAAAAAATACTCAGTGTTATGATACACCAAAACATCAGGAGGGATCCGGCAGACATGGAGAGCTGTAAATACTCGCTGCTtgttgaaatgaatgaataacgtcGGCGCGGACAAGCAGACGGCGACAAAACGTCCAGTATCTCAACAACAGCAGCAACTGAAAGTCGGACACCATGAATTACGTGGGGCAGTTGGCTGGTCAGGTGCTGGTGACCATGAAGGAGCTGTATAAGGGTATTAACCAGGCCACACTCTCCGGCTGCATTGATGTAGTAGTGGTCCGCCAGAAAGATGGAACCTACCAGTGCTCTCCTTTCCATGTGCGCTTTGGCAAACTGGGTGTGCTGCGTTCCAAAGAAAAAGTGATTGACATAGAGATCAACGGGGAGCCTGTGGATCTCCACATGAAGCTGGGAGATAATGGAGAAGCTTTCTTTGTACAGGAAACCGAGGAGCAGAATGAGATTGTACCAGCACACCTGGCCACCTCCCCCATTCCCACAGAGAGTCACTTATTTTGGATCGGAGGCGATCATAGGTCAAGTCAAAACCTGGACGATGACCCACTTGATCCAGAGGACCCTCCTGATCGACCAGTTGCCAGCACAGGGGGagccaagaagaagaagaaacggaGAAAGAAGCATAAAGGTGATCCCCGGCGAGAGGAGTTCACCCCCCCTGCCGTTATCAGCTCTACCCCTTCCACAGATGAAATATTTGAGATGGACCTGAGTTCTGATGAAGACGCTATTTCCAACACTAGATCATCTTCAGTCAGTACAGTTAAAGAAAGTGAACCCAAATTACCAACAATTCGACATTCTTTGGACAGCTACCCTTACTCTGACGGAGACTGGTCTCCATCAGATAGCAGTCATGCTATGTCAGAGGCCTTTTCTCCCAAGAGTGACTCTGAACTGGTTGTTCGGCCCTCAGAGAGCCTTCTCAAAATGGAGTCACACATGCAATGGACATGGGGAGAGTTTCCAGAATCTACAAGGgtttctaaaaaagaaaagataGAGCTGCCGAAGACCGTGACCATAACGCCTTCAGAAAACACTCACTTCAGGGTCATCCTCAGCTCAGAGGCCATGGAGACGGATGAAAGAGAACCTACATCAGGCACTCCAAGTTGCACCATAGTCAAGCCTGAACCCCGCACTCCTGTGACCCCTAAAACTCCCACTGAGTCTGAGTTGGAGACGATGCCTTGTGAAGTGCTGACCTCCACTCCTTCAGACATTCTCACTGCTGCTCCCACTTCTCCAGCCGctgtctctgctgctcctttgGGTGGGGACATTGGAGATGTTGGTTCCAAAACTGACTCTCCTTCCAAGAAGAAAGGTGTCCCAAAAAGGAGTCAGCACCAGGGCCCAGAGGACATCTACCTGGACGACCTGAATGTGCTGGAGCCTGATGTTGCTGCTCGCTATTTTCCTAAGagTGATTCAGATGCTGGTTCCAAGCACTGGATGGATTCTGGGATGCACTCTGGCTCTCAGTCACCACAGTCTGTGGGCAGTGCTGCGGCTGACAGTGGCACCGAGTGCCTGTCTGACTCTGCCAGTGATCTCCCTGACGTCACCCTGTCTCTGTGTGGAGGACTCAGCGAGAATGGAGAGATTTCCAAAGAAAAATTTATGGAGCATATCATCACATATAATGAATTTGCAGAAAATCCAGCCATCATAGACAATCAAAATTTAGTTGTTAAAATAGGAAACAGGTATTATAATTGGACACTGGCCGCCCCTTTAATCTTAAGCTTGCAAGCATTTCAGAAGAATTTACCCAAGGCAACTGAGGAAGCTTGGGTGAAAGAGAGGATGCCAAAGAAATCAGGGCGCTGGTGGTTCTGGAGAAAGAGAGCAGACAGCACTATTAAACAGTCAGAAAGCACTGGAAAGCTGGAAGCAAAGCAGTCCCAACTGGAGGAAGGGAGCTCTTCTTTGTCCATGGAAAGTCATGCCCGCAAAGTGGACACCAGGGACTCATCCAGTGATGAGGAAGGGAAGGAGGTGAGCGCTGCTGCATCATCAATGGAGCGCAAGATCCAGTCTGAGCCCCACGGccacacatccacacactcttaCCGAAAATCCCTCCGCCTCTCCTCCAGCCAGATTGCTAGTTTGAAGCTGAAGGAAGGACCCAATGATGTGATGTTCAGCATCACAACACAATACCAGGGCACATGCCGCTGTGAAGGCACCATCTACCTGTGGAACTGGGATGACAAAGTCATCATCTCTGACATCGATGGAACCATCACCAAATCAGATGTGTTCGGCCAGATTTTGCCGCAGTTTGGAAAGGACTGGACCCATCAAGGCATTGCTAAACTGTACCACTCGGTGGCTGAGAATGGATATAAGTTTCTGTATTGCTCAGCAAGGGCAATTGGCATGGCAGATATGACACGAGGGTATCTGCAGTGGGTAAATGACGGAGGTATAATCCTGCCACGTGGACCACTCATGCTCTCTCCCAGCAGCCTTTTCTCAGCATTTCACAGGGAGGTGATTGAAAAGAAGCCAGAAATCTTCAAAATCGAATGCCTTACTGATATCAagaaccttttcctgcccaacaAACATCCTTTTTATGCCGCATTTGGGAACCGAACAAATGACGTCTTTGCCTATAAGGAGGTTGGAGTGCCAGTTTGCAGAATCTTTACGGTTAACCCCAAAGGAGAGCTCATACAGGAGCAAACCAAGGGCAACAAGTCCTCGTACAGCAGATTGAGTGAGCTGGTGGATCATGTCTTTCCTTTGCTGAGTAAAGAGCAAAGTTCTGCTTTCAGTTTCCCGGAATTCAGTACCTTCTGTTTCTGGCGTCAGCCAATCCCGGAGATCCGTCCAGAGGACCTACTTTTATAGACCATCCTGAAGGCCCATCTATTACCTGCTCGCGTCATCTCTGCCTTCAGAAGCACTTAGCCGGTACTTTTCAGCATCTCACATCTATAGTTTTTATTCCCCCACACCACCTGAGAAACATGAACTGCACAAAAACACCTGTAAGAACCAGCGTGAGAGAAAACTCCAAAACACAACCCGGTGTCACATTAATGGGATGCACGCAGAACTTCCACAAATTAAACACCTGGTGCTGCTCTTAAACAAGATTTCTAATCTGTATCATTTTGATTAGCTGCTATGATTTAGGCTGCTTCAGCTCTTGAAGGAATTTCTTGCTAATGGGCTAATGTTTACAGTATTAGTTAGACAGCCAGTGGCCTCTTGGCCAACGGAACGAGTACACAGCTgtttgtctgagtgtgtgtgtgaggttaaACGTGGCATAAAGATACGTTTATAATGGAAAGTAATTAACGATATTCTTTACAACCACTAATTTACAACTGTAGATCATAGCTTATTTATATACAAAGGTATTAGTTAGAATTAACTAATTAACATGCACTGCCTCTAAGATGTGGTGACTGTATGACAGTTTGAATATGCATTGCCAGATGGTGCGAAATGAGCTCTGAATCTCGGAGATACTGGAAAGTATGCACAGAATGAGCCGTGCCACGCGAGGACACGCAGCTCATCATTTACAGTTCAACAGATTTAGCTCATACAGTCGACTAGATTCACATGAAAAGTACACAGAGGAGTTCATTGTAATTGGGCTTTTCTTTATTTCCAACTGTTGACATTTTCATCGTCTGGTTGCTGCAGAACGCCTTAGCGATCGCACTTTTTCAGCTGGAGCCTAGAGAAGAGAAATATCAGATAGTCTTGCACTCAACTCGTGACGGAAATGCAATAACGTTCAAAGCTTTTCTGCAGGCTTATGTGCACAGTGCAAGGATTTAAGTGCTTTTAGATCCTTCATGTAAACCTCAGCAAGAGGTCTGTATTAACTTAATAATATATTTGCTTTCTAAATGAAGGTATGTTGTATGTTGAGCTGGCCTGAGGCCTGTGGGAGAGTAGCAGTAACAAATGCTcttgaacatttttgtttgtttgtttttccactTACCAGGCCTTTGCATGCTTCGTTTGGAATATAAAGATGACCGTTTATGTTTTGACGCTTTCTTTTTCGGGTAGACATTCCGAAGGGTCGTCACGTTGTACATTTTCAATATTAGTGGATGATCTTGAGCAGTAGAAActaattatttgaaaacattgaAGCTGATGtgcaagtgaatgatgagagtgATCTGATCTTTCCACTTGGTCACGGTTGACTGAAGTAACATGCCCTTTTTTCCGTCTAGTTTGTCATTAAGGTCTCGGCTTGTACCTTTAGGCTTTGGTAGCGTTAGGATAAGTTTTAGGGCACTGTGTGCTGGATGTTTAAATAGATGTACAGAATTAGAGcacaacaaattatttctttaaggcaaatcattagggAATATCGGGGCATTTCATGGTTCAGTTGTGATTGTGATTTTGTATATGTGTGTTGCGCTTCTTGTCTGCAGTTATGATGTTTGGAAGTGAAATCTGTTAATTGTTAACAAAGGAATCCCATTCTTTCTATGAAAGTAATACCTCTTGTGTGGGATGAACACACTCATCTTGTATGAAACTAACAATTGTAAAAagacacagaaaaaaaatgttatgaaaaaaaGCCTCTTCTTTCTTTTGTTGTAAGTGCTGAATGTGTTTTGTCATTCTTCTTGATCTTCGATGCcttttgttttacttgcttttaTTTCTAGTTGTGTGTACTTGAGTGAGATGGTGCGTGTTTTGGGTTCGCTCTATAGGTTTGCATTGAGTTTGACCAGCTTATATACAGTACCTTGAAATGGATAATTGtattataaatttacaaaaactaTGGTTTGGATGATGTTTATGAATCTATTAAAGATGTATTTAATACA
>TCONS_00031076
TCGGACACCATGAATTACGTGGGGCAGTTGGCTGGTCAGGTGCTGGTGACCATGAAGGAGCTGTATAAGGGTATTAACCAGGCCACACTCTCCGGCTGCATTGATGTAGTAGTGGTCCGCCAGAAAGATGGAACCTACCAGTGCTCTCCTTTCCATGTGCGCTTTGGCAAACTGGGTGTGCTGCGTTCCAAAGAAAAAGTGATTGACATAGAGATCAACGGGGAGCCTGTGGATCTCCACATGAAGCTGGGAGATAATGGAGAAGCTTTCTTTGTACAGGAAACCGAGGAGCAGAATGAGATTGTACCAGCACACCTGGCCACCTCCCCCATTCCCACAGAGAGTCACTTATTTTGGATCGGAGGCGATCATAGGTCAAGTCAAAACCTGGACGATGACCCACTTGATCCAGAGGACCCTCCTGATCGACCAGTTGCCAGCACAGGGGGagccaagaagaagaagaaacggaGAAAGAAGCATAAAGGTGATCCCCGGCGAGAGGAGTTCACCCCCCCTGCCGTTATCAGCTCTACCCCTTCCACAGATGAAATATTTGAGATGGACCTGAGTTCTGATGAAGACGCTATTTCCAACACTAGATCATCTTCAGTCAGTACAGTTAAAGAAAGTGAACCCAAATTACCAACAATTCGACATTCTTTGGACAGCTACCCTTACTCTGACGGAGACTGGTCTCCATCAGATAGTCATGCTATGTCAGAGGCCTTTTCTCCCAAGAGTGACTCTGAACTGGTTGTTCGGCCCTCAGAGAGCCTTCTCAAAATGGAGTCACACATGCAATGGACATGGGGAGAGTTTCCAGAATCTACAAGGgtttctaaaaaagaaaagataGAGCTGCCGAAGACCGTGACCATAACGCCTTCAGAAAACACTCACTTCAGGGTCATCCTCAGCTCAGAGGCCATGGAGACGGATGAAAGAGAACCTACATCAGGCACTCCAAGTTGCACCATAGTCAAGCCTGAACCCCGCACTCCTGTGACCCCTAAAACTCCCACTGAGTCTGAGTTGGAGACGATGCCTTGTGAAGTGCTGACCTCCACTCCTTCAGACATTCTCACTGCTGCTCCCACTTCTCCAGCCGctgtctctgctgctcctttgGGTGGGGACATTGGAGATGTTGGTTCCAAAACTGACTCTCCTTCCAAGAAGAAAGGTGTCCCAAAAAGGAGTCAGCACCAGGGCCCAGAGGACATCTACCTGGACGACCTGAATGTGCTGGAGCCTGATGTTGCTGCTCGCTATTTTCCTAAGagTGATTCAGATGCTGGTTCCAAGCACTGGATGGATTCTGGGATGCACTCTGGCTCTCAGTCACCACAGTCTGTGGGCAGTGCTGCGGCTGACAGTGGCACCGAGTGCCTGTCTGACTCTGCCAGTGATCTCCCTGACGTCACCCTGTCTCTGTGTGGAGGACTCAGCGAGAATGGAGAGATTTCCAAAGAAAAATTTATGGAGCATATCATCACATATAATGAATTTGCAGAAAATCCAGCCATCATAGACAATCAAAATTTAGTTGTTAAAATAGGAAACAGGTATTATAATTGGACACTGGCCGCCCCTTTAATCTTAAGCTTGCAAGCATTTCAGAAGAATTTACCCAAGGCAACTGAGGAAGCTTGGGTGAAAGAGAGGATGCCAAAGAAATCAGGGCGCTGGTGGTTCTGGAGAAAGAGAGCAGACAGCACTATTAAACAGTCAGAAAGCACTGGAAAGCTGGAAGCAAAGCAGTCCCAACTGGAGGAAGGGAGCTCTTCTTTGTCCATGGAAAGTCATGCCCGCAAAGTGGACACCAGGGACTCATCCAGTGATGAGGAAGGGAAGGAGGTGAGCGCTGCTGCATCATCAATGGAGCGCAAGATCCAGTCTGAGCCCCACGGccacacatccacacactcttaCCGAAAATCCCTCCGCCTCTCCTCCAGCCAGATTGCTAGTTTGAAGCTGAAGGAAGGACCCAATGATGTGATGTTCAGCATCACAACACAATACCAGGGCACATGCCGCTGTGAAGGCACCATCTACCTGTGGAACTGGGATGACAAAGTCATCATCTCTGACATCGATGGAACCATCACCAAATCAGATGTGTTCGGCCAGATTTTGCCGCAGTTTGGAAAGGACTGGACCCATCAAGGCATTGCTAAACTGTACCACTCGGTGGCTGAGAATGGATATAAGTTTCTGTATTGCTCAGCAAGGGCAATTGGCATGGCAGATATGACACGAGGGTATCTGCAGTGGGTAAATGACGGAGGTATAATCCTGCCACGTGGACCACTCATGCTCTCTCCCAGCAGCCTTTTCTCAGCATTTCACAGGGAGGTGATTGAAAAGAAGCCAGAAATCTTCAAAATCGAATGCCTTACTGATATCAagaaccttttcctgcccaacaAACATCCTTTTTATGCCGCATTTGGGAACCGAACAAATGACGTCTTTGCCTATAAGGAGGTTGGAGTGCCAGTTTGCAGAATCTTTACGGTTAACCCCAAAGGAGAGCTCATACAGGAGCAAACCAAGGGCAACAAGTCCTCGTACAGCAGATTGAGTGAGCTGGTGGATCATGTCTTTCCTTTGCTGAGTAAAGAGCAAAGTTCTGCTTTCAGTTTCCCGGAATTCAGTACCTTCTGTTTCTGGCGTCAGCCAATCCCGGAGATCCGTCCAGAGGACCTACTTTTATAG

Function

symbol description
lpin2 Predicted to enable phosphatidate phosphatase activity and transcription coactivator activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; fatty acid catabolic process; and triglyceride biosynthetic process. Predicted to be active in cytosol; endoplasmic reticulum membrane; and nucleus. Orthologous to human LPIN2 (lipin 2).

GO:

id name namespace
GO:0032869 cellular response to insulin stimulus biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0044255 cellular lipid metabolic process biological_process
GO:0019432 triglyceride biosynthetic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0008195 phosphatidate phosphatase activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-153 Predicted to enable phosphatidate phosphatase activity and transcription coactivator activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; fatty acid catabolic process; and triglyceride biosynthetic process. Predicted to be active in cytosol; endoplasmic reticulum membrane; and nucleus. Orthologous to human LPIN2 (lipin 2).

Ensembl:

ensembl_id ENSDARG00000061214

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031075 False 4923 mRNA 0.45 20 30960351 30984508
TCONS_00031076 True 2724 mRNA 0.49 19 30969029 30982526

Neighbor

gene id symbol gene type direction distance location
XLOC_015542 myom1a coding upstream 438 30916188 ~ 30959913 (+)
XLOC_015541 bag1 coding upstream 52051 30904069 ~ 30908300 (+)
XLOC_015540 chmp5a coding upstream 59231 30894595 ~ 30901120 (+)
XLOC_015539 oprk1 coding upstream 73784 30878864 ~ 30886567 (+)
XLOC_015538 atp6v1h coding upstream 113424 30786773 ~ 30846927 (+)
XLOC_015544 NA coding downstream 91068 31075576 ~ 31084080 (+)
XLOC_015545 CT955962.3 coding downstream 115936 31100444 ~ 31217778 (+)
XLOC_015546 CT955962.2 coding downstream 116580 31101088 ~ 31101573 (+)
XLOC_015547 CT955962.1 coding downstream 123421 31107929 ~ 31108414 (+)
XLOC_015548 clul1 coding downstream 286574 31271082 ~ 31364659 (+)
XLOC_015527 NA non-coding upstream 625838 30329405 ~ 30334513 (+)
XLOC_015525 CR788254.3 non-coding upstream 679847 30277334 ~ 30280504 (+)
XLOC_015524 CR788254.1 non-coding upstream 683289 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 non-coding upstream 690188 30269306 ~ 30270163 (+)
XLOC_015521 NA non-coding upstream 762610 30197370 ~ 30197741 (+)
XLOC_015549 NA non-coding downstream 307138 31291646 ~ 31292603 (+)

Expression


Co-expression Network