XLOC_015545 (CT955962.3)


Basic Information

Item Value
gene id XLOC_015545
gene name CT955962.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31100444 ~ 31217778 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031077
CACGGACCAACGAGCGCCAAACGGACATCGTTAATTTGAACACGGACCAACGAGCGCCAAATGGACATCGTTAATATGAAGGAACAACGTACGCCTAGTCGTATTGGTGGTATTTTAATTGCGTTTTTGCTTTTGTTCAGACATCGTTAAGCACTAATGCTTGTGCTGCTCGTAAATCACTTACTTATTGGTTGAACTGAAATATTGACGCCGCCGAAATGACCCGCTGTCAGGAACAACACGAGGTTTTCATGCTTTCATACTTGGATCGAAACATGCCTGTAAGGCACAGAATCAAAGAATGAGCGAAGTCCAGGGCAGAAGAAGGGGAGAGAGTAACCTATACCAGAGGGAACAAAATACCACTGCAATCTTTGCCAGTGACAGCCACGCTGCGGTCGCCCACCTTGCCCTCTAAATGAGATCCTATTTACAAGATCTCTCAGAGCTCCGGAAGTGCCATCCAGAAATATTTCGGTAGGAAAATATATCAATAATCACAAAAGTTAAAACTTGGAC
>TCONS_00033271
CACGGACCAACGAGCGCCAAACGGACATCGTTAATTTGAACACGGACCAACGAGCGCCAAATGGACATCGTTAATATGAAGGAACAACGTACGCCTAGTCGTATTGGTGGTATTTTAATTGCGTTTTTGCTTTTGTTCAGACATCGTTAAGCACTAATGCTTGTGCTGCTCGTAAATCACTTACTTATTGGTTGAACTGAAATATTGACGCCGCCGAAATGACCCGCTGTCAGGAACAACACGAGGTTTTCATGCTTTCATACTTGGATCGAAACATGCCTGTAAGGCACAGAATCAAAGAATGAGCGAAGTCCAGGGCAGAAGAAGGGGAGAGAGTAACCTATACCAGAGGGAACAAAATACCACTGCAATCTTTGCCAGTGACAGCCACGCTGCGGTCGCCCACCTTGCCCTCTAAATGAGATCCTATTTACAAGATCTCTCAGAGCTCCGGAAGTGCCATCCAGAAATATTTCGGGATTCAGCTCTAGAAGCAAGGAAACAGCATGATGGCATCAGATGCAGGGACTGTCACAAATCAATTCAAGTCTCAAGGGGCTCAAGAGATCCTCGTACCACAGCATATCCAGCCAGCCACCTTAATGAAAACATTGACTTGTAATAATTTACAACTCTTTAAATGAATCAGGGCATATTTTATGGGCAAAATTGGATAGGTGACAGACATTTTGCCTAACACAATGTCAATTTGACTTCTCG
>TCONS_00031080
GCATAACGAATAAACAGTGCATTGCTTATTCATGATCATGAAGTACTGTTTTCAAGGCTGCAGTGTTTGTCTTATGTGAAAACATTAATACTGATCATGGATGTTGTTGTAACATTACTTTCAGGTTTTCATGCTTTCATACTTGGATCGAAACATGCCTGTAAGGCACAGAATCAAAGAATGAGCGAAGTCCAGGGCAGAAGAAGGGGAGAGAGTAACCTATACCAGAGGGAACAAAATACCACTGCAATCTTGTCAGTTGTCTTCACGGAGGACCATTCACTGGTTTGTTTAAATGTGGGGTATTTCATATTCTAAGTTAAGTCTGCTGATATGTGCCATTCTCCAATGAGTGGGTTATTGGCCCATCTGCCAGGCTGATTCATGTTTTGCTACCAAGAGTCATGAAAATAAGAACAACATACAGTTGCTCATTATGCATGAACATAACCAGATTGACGAGCAGACATCTGACATAATGCATGCTGGATATAGTGACAGGCCTGTGTCATCTGTTATGGACAGGGGCCACTGCTCCACCGGAGGGAGAGTTTTTATATGTCTGAAATGAATTATTGGgaatatattagtttttttccaaTGGAATCCTTCAGTTTTCACAATTTTGATGTAAAACATGAATGTATAAATTCATATATAATCTTCCATGACCGTCAAATTATTTTATACatcctattattattttatctttttttccagaatatgatcatgtttttttttttaatctgaaacaTGCTGCAACTTGTAtctaaagtagggctgcacaatattggaaaaatctaacactgcaatatttttttattttgtgat
>TCONS_00031081
GCATAACGAATAAACAGTGCATTGCTTATTCATGATCATGAAGTACTGTTTTCAAGGCTGCAGTGTTTGTCTTATGTGAAAACATTAATACTGATCATGGATGTTGTTGTAACATTACTTTCAGGTTTTCATGCTTTCATACTTGGATCGAAACATGCCTGTAAGGCACAGAATCAAAGAATGAGCGAAGTCCAGGGCAGAAGAAGGGGAGAGAGTAACCTATACCAGAGGGAACAAAATACCACTGCAATCTTTGCCAGTGACAGCCACGCTGCGGTCGCCCACCTTGCCCTCTAAATGAGATCCTATTTACAAGATCTCTCAGAGCTCCGGAAGTGCCATCCAGAAATATTTCGGTAGGAAAATATATCAATAATCACAAAAGTTAAAACTTGGAC

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117501

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031077 False 519 lncRNA 0.45 3 31100444 31132662
TCONS_00033271 False 720 lncRNA 0.44 4 31100444 31217778
TCONS_00031080 False 831 lncRNA 0.36 2 31112476 31115894
TCONS_00031081 True 398 lncRNA 0.41 2 31112476 31132662

Neighbor

gene id symbol gene type direction distance location
XLOC_015544 NA coding upstream 16364 31075576 ~ 31084080 (+)
XLOC_015543 lpin2 coding upstream 115936 30960351 ~ 30984508 (+)
XLOC_015542 myom1a coding upstream 140531 30916188 ~ 30959913 (+)
XLOC_015541 bag1 coding upstream 192144 30904069 ~ 30908300 (+)
XLOC_015540 chmp5a coding upstream 199324 30894595 ~ 30901120 (+)
XLOC_015548 clul1 coding downstream 53304 31271082 ~ 31364659 (+)
XLOC_015549 NA coding downstream 73868 31291646 ~ 31292603 (+)
XLOC_015550 colec12 coding downstream 164812 31382590 ~ 31435158 (+)
XLOC_015551 stam coding downstream 219769 31437547 ~ 31452606 (+)
XLOC_015552 si:dkey-32m20.1 coding downstream 236784 31454562 ~ 31457860 (+)
XLOC_015527 NA non-coding upstream 765931 30329405 ~ 30334513 (+)
XLOC_015525 CR788254.3 non-coding upstream 819940 30277334 ~ 30280504 (+)
XLOC_015524 CR788254.1 non-coding upstream 823382 30276217 ~ 30277062 (+)
XLOC_015523 CR788254.2 non-coding upstream 830281 30269306 ~ 30270163 (+)
XLOC_015554 NA non-coding downstream 319560 31537338 ~ 31540590 (+)
XLOC_015559 NA non-coding downstream 566234 31784012 ~ 31786282 (+)
XLOC_015564 NA non-coding downstream 648721 31866499 ~ 31868755 (+)
XLOC_015567 NA non-coding downstream 801864 32019642 ~ 32127930 (+)

Expression


Co-expression Network