XLOC_015551 (stam)


Basic Information

Item Value
gene id XLOC_015551
gene name stam
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31437547 ~ 31452606 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031087
GTGAGTGACTGAGTAGGGGATCCCGATTCCCGTCAGCGACACTGAGCGGAGTTTCTGTTCtattatgtttattcattcacttttaaTCAAGTGCTGACAGGGAGAAGCACAAGAAGAGGATCGAGTTTAGGTTTGGTAGCGTGTATTTCTCGGCCATGCCTCTCTTCACGACAAATCCATTTGATCAAGATGTTGaaaaagcaACAAGTGAGATGAACACAGCTGAGGACTGGGGCCTCATTCTGGACATTTGTGACAAGATCGGACAGTCTCGCACTGGGCCTAAAGAATGCCTGCGATCTATAATGAGGAGAGTGAATCACAAGGATCCCCATGTTGCCATGCAAGCGTTGACGCTACTCGGTGCATGTGTGTCAAACTGTGGAAAGATATTCCATTTAGAGGTCTGCTCCAGGGAATTTGCTAGTGAagttagcaatgtgctaaataAGGGTCACCCAAAAGTATGTGAGAAGCTAAAGGCTTTGATGGTGGAATGGGCCGAGGATTTCCGCAACGACCCTCAGCTCAGCCTGATCTCTGCAATGATTAAGAACCTCCGAGAGCAGGGCGTCATCTTCCCTGCCGTGGGCTCTCAGGCAGCAGAGCAAGCTAAAGCCAGTCCCGCATTGGTAGCTAAAGATCCTGCAACATCAACAAacaagaaggaagaagaagaccTTGCTAAAGCTATTGAACTGTCTCTGAAGGACCAGCGGCATCAGCAGCCTCAGGTGTCTCTGTCTGGCCTCTACCCGAGCACCAGCAGCCTCCTGACCTCCCACAAGACAGACGGCAGAAAGGTCAGGGCTATCTATGACTTTGAAGCAGCCGAAGACAACGAGCTCACTTTTAAATCAGGCGAGATCATCACTATCCTGGATGACAGTGACCCTAACTGGTGGAAAGGTGAGACATATCAGGGTGTTGGGCTTTTTCCGTCAAACTTTGTGACAGCGGACCTGACAGCAGAGCCTGAGATGATGAAAACAGAGAAGAAGACTGTGCAGTTTAGTGAAGAAGTCCAAGTAGAGACGATTGAACCAGAACCAGAGCCTGCCTACATTGATGAGGAGAAAATGGACCAGCTGCTTCAGATGATCCAGAGTGCAGACCCGACAGATGACCAGTCAGACACCTGTGAGCTCCTACAGTTGGAGGCTGCTTGCAACCAGATGGGTCCTCTCATTGATCAGAAGCTGGAAGACACTGACAGGAAACACTCAGAGCTGTCTGAGCTGAACGTGAAGGTCATGGAAGCTCTGTCTCTCTATGCTAAGCTAATGAATGAAGACCCAGTATACGCTATGTATGCCAAACTACAGAGCCAGCAATACTACATGCAGCAGGCCCCAAACTCTTCCCAACAGGTGTACCCTGGACAGTCCACTGGAGGGCAGTATGCAATGGGAAGCACAGCAGTACCAGGATACAACGTTCCAATGGAGCAGCTTACTGCAATGAACCAAGCAGGAACACCAATGGCAGGGCAGCCTACTCCTAGTGATGTCCATATGTACATGGGCCAACCTCCAGTCTACAGCCCCACTCCTGGCAGCCTTCCTCCAGCTGAAGTCCAGTCTTACCAGACCCCAGCTCCAGCAGTCATGAACCAGAACCCTGCATACACCCTACCTACAACCCAGAGCCTTCCCGCTGCTGCAGACAACCAACAGATCCCTTACCCTGAGAAGGCCCTCTTATAGGGGCCCCTAGAGactcgcacacaaacacacacactcttacaaagAACATTCAGCTCACACAGCAACATCTCCTTGatcctctcctcctctttttatttaagacattacAAACATGACAGGATGTGCCGATTGCTGACTACTAACCGCTGGTGTTCTCACTGAGCACTTTTGATCGCTCTTCTATGTTTTTGGTCtcttttacaatattttgttGAAGGTGATAAGAAGTTACACCATTTATTTGGCGCTGTCATTATAGTAATAATTAACTGGATGTTTCTTACAGGAAAACACAACGAGAGCATGCTTGTGTTGTACATGCATTTCTGTAATGGTGTAGGTCCCGGTAGCTCAGTGTTTGTCAAAACAGGTCCTGAAGGGGAGGGTTCATCatttttaattgtgtgtgtgtgtgtgtgagcaagagggagagagaaagcgAGATCAGGTCCATATATGTTATCACACCTCTCCTGCAGAACCATGTAGCAAAACACTGCCATTGTCTTGACAGTGACCCATTACTCCAGTGTCTATCAAGAGTTAGTTCACCCCATAATGGAAATGCTCATTATTTATTCCAAACCCATAAAAAATCTGTTCATTTTTGGAACACAAGTAAAGATAATTCTAATGGAATATGAGAGATTTCTGCCCCTTCCATTGACAGTTTGATCATATAAAACAGCTGATGCTTCAAACATTCATTAACAGATACAAATCAAACTGTTTTatcttttatctgttttattttacgTTTTCTGAAAGATAAAATCACTTTATAAGATGAATATTAAGTGTGTCAGGCAAATATAGTTGAGCTTCTGGTTCTATTTGCTGATCAGAGTTTATAAATAAAAGCCCAAATGTGATCTGCTCATCATATGTGAACATGTCTCTTCAGAAGACTTTGATTAGACCGCTTTACTGATAAGGATTCATTTTTTGATcactttacattaatatttaaaggTGTCAGAAGTTTTCCTGAATATACTTTCAATGGAGGGACAAAAATCTCTCAGATTTGATTAAAATATTTCGATTAGTGTCCCAAACATGAACAGATTAACATCTCATGGCTTTATAGAgatctgagggtgagtaaatgatgggaaaattgtttttttggggggtgaagcTCACTACTTTAAGCTCAATTCTcagtgttaaaatgttttttagtgcgttttatttatattttgattgtcAGTTTGCTGTTTTATTGACAGTACATTAATAGAAGGATGTAATATTCTGCCTATGTGCAGATTTGTATATACAAGAGCTCACTACTTTCTTTAGAGCGTAACGTTCAAAGCGGCTGCTTTTTCCGTAGAAAGGGCACACGGGAAGTTGAGGAGTAAAACTACTCCATTACATGCACTTTTAATTTACTCTTTTTCCTTCTCCCTAATTTCAGATGTGTCCATTTGAAACCTATGTTTCCTCAGCTCTCGAAGAACCTGAATGGCATTGACCCTGCACTCTAACCCTTCCCTTTTTTccaaacaattataaaaatactCATGCAACTTGTCATGCCctgggaatgaatgaatgatcatgtGTAAATGATCCACCGAGTGTGCAACACTCAAACTAACCTCTTATTTTCATAAGTCCTGTCAAGGGCTGCGACTGACACTAAAGAGAGCAAACTTTGTTCTTCTGACTCTAAAGTAAGGCGGTTCTCCCACATCTGTCTCGATGTAGCTACAGTGTTATCAGAGTAGTCATTGACGTTTCATAGAGAACATTCTGGGAAATTGGGACCATGGGCCAGTTCTAATGTGACACCTTAGCATATGCACATGGAGATGATAATCCTTACGTCAACCTTATCCACAGGGAAAATGGACTGTTTTTGGTGTATCAGTTATATGTACCCAGTTGTTTGTATGTACTATTTTAATCATCTTAATTATTAGTATTCACAATAAAACTAGGCCAAATGTA
>TCONS_00031088
GTGCAGTTTAGTGAAGAAGTCCAAGTAGAGACGATTGAACCAGAACCAGAGCCTGCCTACATTGATGAGGAGAAAATGGACCAGCTGCTTCAGATGATCCAGAGTGCAGACCCGACAGATGACCAGTCAGACACCTGTGAGCTCCTACAGTTGGAGGCTGCTTGCAACCAGATGGGTCCTCTCATTGATCAGAAGCTGGAAGACACTGACAGGAAACACTCAGAGCTGTCTGAGCTGAACGTGAAGGTCATGGAAGCTCTGTCTCTCTATGCTAAGCTAATGAATGAAGACCCAGTATACGCTATGTATGCCAAACTACAGAGCCAGCAATACTACATGCAGCAGGCCCCAAACTCTTCCCAACAGGTGTACCCTGGACAGTCCACTGGAGGGCAGTATGCAATGGGAAGCACAGCAGTACCAGGATACAACGTTCCAATGGAGCAGCTTACTGCAATGAACCAAGCAGGAACACCAATGGCAGGGCAGCCTACTCCTAGGTGTGCACAATGAATTATATTTCACACATTAATAAAGTGGTTAATATTGTTT

Function

symbol description
stam Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in early endosome membrane. Predicted to be part of ESCRT-0 complex. Is expressed in immature eye and nervous system. Orthologous to human STAM (signal transducing adaptor molecule).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway biological_process
GO:0033565 ESCRT-0 complex cellular_component

KEGG:

id description
ko04630 JAK-STAT signaling pathway
ko04144 Endocytosis
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-031118-123 Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in early endosome membrane. Predicted to be part of ESCRT-0 complex. Is expressed in immature eye and nervous system. Orthologous to human STAM (signal transducing adaptor molecule).

Ensembl:

ensembl_id ENSDARG00000002127

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031087 False 3665 mRNA 0.43 14 31437547 31452606
TCONS_00031088 True 552 lncRNA 0.48 5 31448456 31449414

Neighbor

gene id symbol gene type direction distance location
XLOC_015550 colec12 coding upstream 2389 31382590 ~ 31435158 (+)
XLOC_015548 clul1 coding upstream 72888 31271082 ~ 31364659 (+)
XLOC_015549 NA coding upstream 144944 31291646 ~ 31292603 (+)
XLOC_015545 CT955962.3 coding upstream 219769 31100444 ~ 31217778 (+)
XLOC_015547 CT955962.1 coding upstream 329133 31107929 ~ 31108414 (+)
XLOC_015552 si:dkey-32m20.1 coding downstream 1956 31454562 ~ 31457860 (+)
XLOC_015553 cacnb2b coding downstream 23166 31475772 ~ 31519662 (+)
XLOC_015554 NA coding downstream 84732 31537338 ~ 31540590 (+)
XLOC_015555 si:ch211-106h4.4 coding downstream 145235 31597841 ~ 31607080 (+)
XLOC_015556 si:ch211-106h4.6 coding downstream 161927 31614533 ~ 31626209 (+)
XLOC_015546 CT955962.2 non-coding upstream 335974 31101088 ~ 31101573 (+)
XLOC_015544 NA non-coding upstream 353467 31075576 ~ 31084080 (+)
XLOC_015559 NA non-coding downstream 331406 31784012 ~ 31786282 (+)
XLOC_015564 NA non-coding downstream 413893 31866499 ~ 31868755 (+)
XLOC_015567 NA non-coding downstream 567036 32019642 ~ 32127930 (+)
XLOC_015568 NA non-coding downstream 696515 32149121 ~ 32188991 (+)

Expression


Co-expression Network