XLOC_015554


Basic Information

Item Value
gene id XLOC_015554
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31537338 ~ 31540590 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033557
ATCACGTGTTGGACAGTATCCCCACTGCTCATATAAACTGTAGTCAGTCTTGGTTGCGCACCACAGACGCTGGTCCGGTTCATCAACTGTGGTACAATCTGCATACCACTTTTTCTCATACAAAAAAGGAAACTTGCATGTCTGCCCAAATCCATTTCCATCAATGCTGTAGATACCTTCATAAGGCCGAGAGCAAATGCTGTCCTGTGTGCCATGAATTGTCCATTTGCTTCTGATTCCAGTCTTATTAGAAATCTCAGGTAAACCCCTAAAATCTACAGCCAGGAACAGAGTCTCATTCTTTAGTCCAAGCAATGTGTTCCCATGGCATTCCCACTTCTGCAGAGCATTGTCATCGTTGCACTTTAAGGGCTGCAGAGTTTTGCCCACCGTTTTACTTCCCACTCCAAGACACGTCTTTGTGAAAGTGTTCAAAATGCGGTTACTTGAAGTCCAGCGGAACTTTTGTTGGGCACTGTGTGGGTCACAGGTGACAAGCCTGTTCAAAGTGCTAGTCAAGCATTTATTAGAGTCCACATTGTATAATAAAAAGCTGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033557 True 558 lncRNA 0.44 2 31537338 31540590

Neighbor

gene id symbol gene type direction distance location
XLOC_015553 cacnb2b coding upstream 17676 31475772 ~ 31519662 (+)
XLOC_015528 NA coding upstream 77009 30365801 ~ 31460329 (+)
XLOC_015552 si:dkey-32m20.1 coding upstream 79478 31454562 ~ 31457860 (+)
XLOC_015551 stam coding upstream 84732 31437547 ~ 31452606 (+)
XLOC_015550 colec12 coding upstream 102180 31382590 ~ 31435158 (+)
XLOC_015555 si:ch211-106h4.4 coding downstream 57251 31597841 ~ 31607080 (+)
XLOC_015556 si:ch211-106h4.6 coding downstream 73943 31614533 ~ 31626209 (+)
XLOC_015557 si:ch211-106h4.12 coding downstream 125246 31665836 ~ 31669111 (+)
XLOC_015558 ackr4a coding downstream 130955 31671545 ~ 31674403 (+)
XLOC_015559 NA coding downstream 243422 31784012 ~ 31786282 (+)
XLOC_015549 NA non-coding upstream 244735 31291646 ~ 31292603 (+)
XLOC_015545 CT955962.3 non-coding upstream 319560 31100444 ~ 31217778 (+)
XLOC_015547 CT955962.1 non-coding upstream 428924 31107929 ~ 31108414 (+)
XLOC_015546 CT955962.2 non-coding upstream 435765 31101088 ~ 31101573 (+)
XLOC_015564 NA non-coding downstream 325909 31866499 ~ 31868755 (+)
XLOC_015567 NA non-coding downstream 479052 32019642 ~ 32127930 (+)
XLOC_015568 NA non-coding downstream 608531 32149121 ~ 32188991 (+)
XLOC_015569 NA non-coding downstream 723765 32264355 ~ 32266672 (+)

Expression


Co-expression Network