XLOC_015559


Basic Information

Item Value
gene id XLOC_015559
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31784012 ~ 31786282 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031101
GTATATTactaagattttaaaaaataccgTCAGAGTTCTCTGTTTGAGGTGTGTGTCCCTCTGAAAGGTTGAAAGTGCCGTTGTCTGTCCACGTGACTTCAGAGACCTCTGTGTCTGATAAGGACAGCTCTTTGCACACAGTGGAGTCCATCTGCAACAGATCGGTTCACAGGAAATGGACATATGAATATTATATCATTAAACCCTTTGTCTTCAGTTGTGTGACAGTGTGCTGACCTTGGGGAAAAGTGCAGACAGATCTGCTTCGATGCACTCTCTCTCGGTTTGTGACTGGAGTATCCTTTTCTCTGCAGAAAGAGATCCAGTTTCTGCAGAACTGGTTCCAACCACATCCCGAACTCATGTGACGACACCAAAGGCCAGAGAAAAATACCCAGCACTGCGGTAAACAGATGTGTAAACTATTAATGTAAGGCTCACACTTACGAACCTGCTGACTGCCAGGAAGAAAAAGAAACCAGAGActgagtgtgaatgtgaatgtcGTCACAGTGACATTACTAAGAATCCACTACCACATGACGAATGGGCTGTGCTGGAGGTAAATCCGGAGGGGGTTTGCTCTCCTTGGCCAGTAGCAGCATGGTTACATTCATTTTGGATGtattttgaatgtattttaaatgaattcaactctgaaatctggactttactagaacttttatgttaagcggcttcgacacaatctacattgtaaaggtGCTTTCTAATTAAacctaaattgaattgaatttgtaaAGAAATGTCAGtgaaaaaataagacaaaataactattattatcattatatgtTTAGGATCTTTTTTTGGTACTTACCTAAAATGTATGAAATAACAACCCCTGGTACGTAACGTCCAAGTATTGCTAGAAAAGAGCACATACTGCAAACCAGCAGACAAAACTGCAAATgagacacaaatttaaaatggctCAGTTCACTGTAAATTAATCACTGtgtgaaataataaatacatgcaaTGGGAAATACTAAACTTAAATGATTATAAACACAGCTGCTAAAAAGCCTACATTAAAATTACATGGCATACTTGTAATATTTCTCATTAAATTACTATATAAAACATGAA

Function

GO:

id name namespace
GO:0016056 rhodopsin mediated signaling pathway biological_process
GO:0050877 nervous system process biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0009314 response to radiation biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031101 True 1107 lncRNA 0.38 2 31784012 31786282

Neighbor

gene id symbol gene type direction distance location
XLOC_015558 ackr4a coding upstream 109609 31671545 ~ 31674403 (+)
XLOC_015557 si:ch211-106h4.12 coding upstream 114901 31665836 ~ 31669111 (+)
XLOC_015556 si:ch211-106h4.6 coding upstream 157803 31614533 ~ 31626209 (+)
XLOC_015555 si:ch211-106h4.4 coding upstream 176932 31597841 ~ 31607080 (+)
XLOC_015554 NA coding upstream 243422 31537338 ~ 31540590 (+)
XLOC_015560 rnf182 coding downstream 18300 31804582 ~ 31805604 (+)
XLOC_015561 ranbp9 coding downstream 20320 31806602 ~ 31827960 (+)
XLOC_015562 epdr1 coding downstream 47715 31833997 ~ 31836902 (+)
XLOC_015563 stard3nl coding downstream 52160 31838442 ~ 31853345 (+)
XLOC_015564 NA coding downstream 80217 31866499 ~ 31868755 (+)
XLOC_015549 NA non-coding upstream 491409 31291646 ~ 31292603 (+)
XLOC_015545 CT955962.3 non-coding upstream 566234 31100444 ~ 31217778 (+)
XLOC_015567 NA non-coding downstream 233360 32019642 ~ 32127930 (+)
XLOC_015568 NA non-coding downstream 362839 32149121 ~ 32188991 (+)
XLOC_015569 NA non-coding downstream 478073 32264355 ~ 32266672 (+)
XLOC_015570 NA non-coding downstream 599406 32385688 ~ 32390974 (+)
XLOC_015528 NA non-coding upstream 323683 30365801 ~ 31460329 (+)
XLOC_015547 CT955962.1 non-coding upstream 675598 31107929 ~ 31108414 (+)

Expression


Co-expression Network