XLOC_015564


Basic Information

Item Value
gene id XLOC_015564
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 31866499 ~ 31868755 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033558
TTTAATTCTAGATTTTCTCTTTTATAAAGAGGATCTATAAGCACTCTTTGGTGGGAATGAATTACGACTGAATTCTTTATTCTATTTGTTTTGGTGTTTGGCAGAGGCTGTCTATGTCAGCCTTTATGCCACAGtgtagtaataaaaaaatcttgtgGTTTCTGAGGAGGAAAGGAGCCCTGTCaagtttttgttcagtgtttctgtatttttaaCTGCTGTGACAGCTGATCTATCCCAACAAGCACAGTAATAGACTGCTGAATGCTCTGTTTTCAGTTCAGGTATTTTCAGAGCAATATTTGACTGTTTACGGTCTATTTTAAACAATTCAAAACCAGCATCTCTGGCTGGTTCTCCTCCTGAAATTTGTGCATATAATATTCTCTTTAAGGTTTGTCCTTTTAGTTGGTACCAGTGGATGTACCTATAACAGTCTGAAGGGTAATCACAGTCTATGACAACAGTCTTGTCCTGAGATTTGGTTGAGGATATTTTCTGTCGCAGCATCGCTTGTCCATCAACTGCAAGAAAACTCAGCattattgaaaacaaaatataaaagcaccacaaataaattgaatgaagtttgttatatttgctttttgtgaCATTGTACACACTTATTCAACATGGGTAaaaaacatacctctatataaaagaaagaaaaacaagatcATTTGAAGGCTCATGCTGGCAGAGAGCATCTGCAGAGCATCTGGCTTCATTCTGTGGTGAAGAAGAGCAGATGACTGACAGCAGGTTTATAATATAGTCAGTTTTGGGTGCTGTGCTGAATTTTTACTCCTACCAAAGTTTTACACCACTACTGATAGGTTTCGAGTTTAGTGTGGGGGAGGGGTAATGGTATGTTCAACCCCCAAATATAAGCTTTATCTGAAATCGACCCTCATCCACTATTGCCTACACTGCTCCGCTGTGCACTGGAAggaatgtgacaaaaaaaaattaagagaaacgTTTGTGGTTTCTGATAAAGACAGGAAACCTTGAACTGTTTTTTGTGCAGGGCTTCATTTAGTTGTATTTACTGTGCTGCCTGTGTTCCAGTTCCAGCAAGAGCAGTAATACATCGCTGAATGCTGCTTTTCCAGCTTGGCGattatcaaaacaaaatgatttattgttttccttTCTGATTTTATGAACTCAAAACCTCATAATAACATTTTGTTAAACAGGAGTActaaaaattctgatttcaactgtatgtttgtaCCCCTTTTATAAAAAGACAAATAGACCTTGGCTTTTTAAATAACATATAGAATGAGATAATCTGATAGTTTATGATCTTGTTGTTTGATttgcataaaataatgaaatgtttaACATAATACTGAATATGTACTACAATTAcaTTTCTAATAAGCTAAACTTGTGtattgtactaaattgtaaagttaacttttcattttcttaaaTTTGCTTGACATGCCTATTTTATAATTGACtcttttacctttttttaatagTAATCCAGTGGGATTACAGTGATATATGTCATGCTCTATACATTAAAGATAAATTAATTGTAAGACATTAAACCAGTGTTTTGTATCAAGTCATTTTGATCCATGTTTACATGATAGCAACACTCGAGAAGGGTCAAGCTGCAGACTGGGTGCAGATGCAAGCTGAGCTACATGCAATTCTAATTAAGATGCACACCTAATCccgcccctaaccctaacccttacATTGACATAACTAGCTCtgttgagtgcattgtgtctaagATTACATATCTGAGATGGTGTCTCAGTTTGCATATTTAAGTCTACAGTCAGATACTATTGAAGAACTCTAACTCgcagctgcagatttgtcggttcCACAAACCCTTATCAGAACTTCTT

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0007492 endoderm development biological_process
GO:0043583 ear development biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0071599 otic vesicle development biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0043049 otic placode formation biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048839 inner ear development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0030916 otic vesicle formation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033558 True 1880 lncRNA 0.36 2 31866499 31868755

Neighbor

gene id symbol gene type direction distance location
XLOC_015563 stard3nl coding upstream 13154 31838442 ~ 31853345 (+)
XLOC_015562 epdr1 coding upstream 29597 31833997 ~ 31836902 (+)
XLOC_015561 ranbp9 coding upstream 38539 31806602 ~ 31827960 (+)
XLOC_015560 rnf182 coding upstream 60895 31804582 ~ 31805604 (+)
XLOC_015559 NA coding upstream 80217 31784012 ~ 31786282 (+)
XLOC_015565 otulinb coding downstream 73635 31942390 ~ 32009716 (+)
XLOC_015566 mycb coding downstream 147501 32016256 ~ 32018371 (+)
XLOC_015567 NA coding downstream 150887 32019642 ~ 32127930 (+)
XLOC_015568 NA coding downstream 280366 32149121 ~ 32188991 (+)
XLOC_015569 NA coding downstream 395600 32264355 ~ 32266672 (+)
XLOC_015554 NA non-coding upstream 325909 31537338 ~ 31540590 (+)
XLOC_015549 NA non-coding upstream 573896 31291646 ~ 31292603 (+)
XLOC_015547 CT955962.1 non-coding upstream 758085 31107929 ~ 31108414 (+)
XLOC_015546 CT955962.2 non-coding upstream 764926 31101088 ~ 31101573 (+)
XLOC_015570 NA non-coding downstream 516933 32385688 ~ 32390974 (+)
XLOC_015571 BX323559.6 non-coding downstream 736092 32604847 ~ 32608027 (+)
XLOC_015545 CT955962.3 non-coding upstream 648721 31100444 ~ 31217778 (+)

Expression


Co-expression Network