XLOC_015608 (klhl20)


Basic Information

Item Value
gene id XLOC_015608
gene name klhl20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 34112100 ~ 34126879 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031168
tgaaaaataaaaaataaaagtggaGGGTGGCTGTTAACCCAGCGGTTGTACTGTTATCATCTGCCAGGTCCCGACGGCAAAAGATTCAATCTGGACCGATTTAATGGACAAATAAGGGGTACCAGTGCACGCCCAGATACCACAGGAATGGATATCACAAGTCGCTGCACCCTGGGTGACCCCAACAAGCTCCCAGAGGGAGTTCCTCAGCCTGCCAGGATGCCCTATATTTCGGACAAGCACCCTCGGCAGACCCTGGAGGTCATCAACCTGCTCCGCAAGCACAGAGAGCTGTGTGATGTGGTTCTAGTGGTAGGGGCCAAGAAGATTTATGCACACCGTGTGATCCTGTCAGCCTGTAGCCCCTATTTCAGAGCCATGTTCACTGGTGAACTGGCAGAGAGCCGACAGACGGAAGTCGTCATCAGAGATATCGATGAACGAGCCATGGAGCTGCTCATCGACTTCGCTTATACATCACAGGTGACTGTGGAGGAGGGAAATGTTCAGACTTTGCTGCCCGCTGCCTGCTTGTTGCAGCTGGCGGAGATTCAGGAAGCCTGCTGTGAATTCCTCAAGCGCCAATTGGACCCCTCCAACTGTCTGGGCATCAGGGCCTTTGCTGACACTCACTCCTGCCGAGAGCTGCTGCGCATTGCTGATAAGTTTACCCAGCATAACTTTCAAGAGGTGATGGAGAGTGAAGAGTTCATGCTGCTTCCAGCCAACCAGCTGATAGACATCATCTCCAGTGACGAGCTCAATGTGCGGAGTGAAGAGCAGGTGTTTAATGCTGTAATGGCCTGGGTTAAATACAGCATCCAGGAGCGCAGGCCTCAGCTGCCACAGGTTCTGCAACACGTGCGTCTTCCCCTCTTAAGCCCGAAATTTCTGGTTGGGACGGTGGGTTCAGATCCTCTGATCAAGAGTGATGAGGAGTGTAGGGACTTGGTTGATGAAGCCAAGAATTACCTCCTGCTGCCCCAAGAGCGCCCCCTAATGCAGGGACCTCGTACCCGCCCTAGAAAGCCTATTCGTTGTGGAGAAGTGCTGTTTGCTGTGGGAGGCTGGTGCAGTGGTGACGCTATCTCAAGTGTTGAGCGCTACGACCCTCAGACCAACGAGTGGAGGATGGTGGCGTCTATGAGCAAACGGCGCTGTGGAGTCGGTGTCAGTGTTCTGGATGATCTCTTGTATGCTGTTGGCGGACATGACGGCTCGTCTTATCTCAATAGTGTGGAGAGGTATGACCCTAAGACTAACCAGTGGAGTAGTGACGTCGCACCCACCAGTACCTGCAGGACCAGTGTGGGCGTTGCTGTTTTAGGAGGGTATCTGTATGCGGTTGGAGGTCAGGATGGTGTTTCCTGTCTCAACATTGTTGAAAGgTATGATCCAAAAGAGAATAAGTGGACTCGTGTTGCCTCTATGAGTACTCGGCGGTTGGGAGTGGCTGTTGCTGTATTAGGGGGTTTTCTTTATGCAGTGGGCGGTTCAGATGGCACATCCCCTCTAAATACAGTGGAGCGCTATAACCCTCAAGAGAACCGCTGGCATACAGTGGCACCGATGGGCACTCGACGGAAACACCTAGGCTGTGCCGTGTACCAGGACATGATCTATTCAGTGGGCGGCAGAGACGACACAACAGAACTGAGCAGCGCTGAGAGATACAACCCTAGGACTAACCAGTGGTCTCCTGTGGTCGCGATGACGTCCAGAAGGAGTGGGGTGGGCTTAGCAGTAGTAAATGGTCAGTTGATGGCAGTTGGAGGATTTGACGGAACCACGTATCTGAAAACTATAGAAGTCTACGACCCTGATGCCAACACTTGGAGGCTCTATGGTGGAATGAACTACAGGAGGTTGGGAGGTGGTGTCGGTGTAATAAAAATGACTCACTGTGAATCTCATATATGGTAACGCCCACAGTATCATCTCACAGATGCCTCACCATTGCTCGTGCCTCAGAGACATTGCACATCATGCAAGAGGAAAGCCGGTTATAAAACAGACTTCTGTCTCCAGTTACCGAGatggcaaagcaaaaaaaaaaacaacaacaaaaaaaggtaaCCATCTCCCGAAAAAGCTGCTCTGAGGAGACTCACCTGTACGGCCATAGAGCATCACTCCATTTTGATTTGACATTCGGTTTCTCTTTCATACTTGAGCATAGCCAAAGGCAATGTTTTTGAAGAGAGAAACAGCAggcggggagaaaaaaaaagctgttttgtttCTCTGGAAGGAACTAAGCTTCTCCTGGTCTCATCTTTGACTGGTTTGAAGAAGAATAACTACAGTAATCTATTACTGGCGATCGTTTTTATGAAAGAAGTGTTTCCCTGATTGTTGTTGGATGCACTGtgatatatttactttttttaatgagTTGCACACTGAGCATTATCTGTTCTTCTGTTTTCTTACCAGATATA
>TCONS_00031169
aagtggaGGGTGGCTGTTAACCCAGCGGTTGTACTGTTATCATCTGCCAGGTCCCGACGGCAAAAGATTCAATCTGGACCGATTTAATGGACAAATAAGGGGTACCAGTGCACGCCCAGATACCACAGGAATGGATATCACAAGTCGCTGCACCCTGGGTGACCCCAACAAGCTCCCAGAGGGAGTTCCTCAGCCTGCCAGGATGCCCTATATTTCGGACAAGCACCCTCGGCAGACCCTGGAGGTCATCAACCTGCTCCGCAAGCACAGAGAGCTGTGTGATGTGGTTCTAGTGGTAGGGGCCAAGAAGATTTATGCACACCGTGTGATCCTGTCAGCCTGTAGCCCCTATTTCAGAGCCATGTTCACTGGTGAACTGGCAGAGAGCCGACAGACGGAAGTCGTCATCAGAGATATCGATGAACGAGCCATGGAGCTGCTCATCGACTTCGCTTATACATCACAGGTGACTGTGGAGGAGGGAAATGTTCAGACTTTGCTGCCCGCTGCCTGCTTGTTGCAGCTGGCGGAGATTCAGGAAGCCTGCTGTGAATTCCTCAAGCGCCAATTGGACCCCTCCAACTGTCTGGGCATCAGGGTTCTGCAACACGTGCGTCTTCCCCTCTTAAGCCCGAAATTTCTGGTTGGGACGGTGGGTTCAGATCCTCTGATCAAGAGTGATGAGGAGTGTAGGGACTTGGTTGATGAAGCCAAGAATTACCTCCTGCTGCCCCAAGAGCGCCCCCTAATGCAGGGACCTCGTACCCGCCCTAGAAAGCCTATTCGTTGTGGAGAAGTGCTGTTTGCTGTGGGAGGCTGGTGCAGTGGTGACGCTATCTCAAGTGTTGAGCGCTACGACCCTCAGACCAACGAGTGGAGGATGGTGGCGTCTATGAGCAAACGGCGCTGTGGAGTCGGTGTCAGTGTTCTGGATGATCTCTTGTATGCTGTTGGCGGACATGACGGCTCGTCTTATCTCAATAGTGTGGAGAGGTATGACCCTAAGACTAACCAGTGGAGTAGTGACGTCGCACCCACCAGTACCTGCAGGACCAGTGTGGGCGTTGCTGTTTTAGGAGGGTATCTGTATGCGGTTGGAGGTCAGGATGGTGTTTCCTGTCTCAACATTGTTGAAAGgTATGATCCAAAAGAGAATAAGTGGACTCGTGTTGCCTCTATGAGTACTCGGCGGTTGGGAGTGGCTGTTGCTGTATTAGGGGGTTTTCTTTATGCAGTGGGCGGTTCAGATGGCACATCCCCTCTAAATACAGTGGAGCGCTATAACCCTCAAGAGAACCGCTGGCATACAGTGGCACCGATGGGCACTCGACGGAAACACCTAGGCTGTGCCGTGTACCAGGACATGATCTATTCAGTGGGCGGCAGAGACGACACAACAGAACTGAGCAGCGCTGAGAGATACAACCCTAGGACTAACCAGTGGTCTCCTGTGGTCGCGATGACGTCCAGAAGGAGTGGGGTGGGCTTAGCAGTAGTAAATGGTCAGTTGATGGCAGTTGGAGGATTTGACGGAACCACGTATCTGAAAACTATAGAAGTCTACGACCCTGATGCCAACACTTGGAGGCTCTATGGTGGAATGAACTACAGGAGGTTGGGAGGTGGTGTCGGTGTAATAAAAATGACTCACTGTGAATCTCATATATGGTAACGCCCACAGTATCATCTCACAGATGCCTCACCATTGCTCGTGCCTCAGAGACATTGCACATCATGCAAGAGGAAAGCCGGTTATAAAACAGACTTCTGTCTCCAGTTACCGAGatggcaaagcaaaaaaaaaaacaacaacaaaaaaaggtaaCCATCTCCCGAAAAAGCTGCTCTGAGGAGACTCACCTGTACGGCCATAGAGCATCACTCCATTTTGATTTGACATTCGGTTTCTCTTTCATACTTGAGCATAGCCAAAGGCAATGTTTTTGAAGAGAGAAACAGCAggcggggagaaaaaaaaagctgttttgtttCTCTGGAAGGAACTAAGCTTCTCCTGGTCTCATCTTTGACTGGTTTGAAGAAGAATAACTACAGTAATCTATTACTGGCGATCGTTTTTATGAAAGAAGTGTTTCCCTGATTGTTGTTGGATGCACTGtgatatatttactttttttaatgagTTGCACACTGAGCATTATCTGTTCTTCTGTTTTCTTACCAGATATAAGCAGATTGTTGTTTCTTTCTTTGGTGTACTGAAAATGCAGTTCCTCCTGAAACGTTGCGGTCTAATGAAGGCTGTCGGAGAGGGAGAAATAAGTTATTTTTGGAGCGCTCACAAACAGGTTTGACATCTTAGCAGTATGTTTACTTTTATACAAGCGAATGCATCAACGAGTCAGTCCATGCACTTTAATCCACTaagatttgtattttattaaagttgtggttttttttctttaaaaatatcgtTGGATGTATTGTTTTATGCAAGTTTGATACCCGAGGTAtgctaaaaaaacaaatcaaacaggTTTCTAGTAATAGCCTGCACGTATGGTCAGATATGGAATGTGGAGCTTGTTACTGAATGAGAGGAATTTCTCCGAAACGAACAACTgcccttactttttttttttttttttaacgaacaccTTTGTTTTCTCACAAAACAGTTCTGTGTTCTAATCTTGGTGTTGAAATACGGTTATAAAGTATATCTTTCATGATCTTATCTTATTTAATTATGAAGATGTTCAACTGTCTatacatttcaaacattttaaagtgGAAATAAAACTAAAGGAGTCAAAA

Function

symbol description
klhl20 Predicted to be involved in protein ubiquitination. Orthologous to human KLHL20 (kelch like family member 20).

GO: NA

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-1935 Predicted to be involved in protein ubiquitination. Orthologous to human KLHL20 (kelch like family member 20).

Ensembl:

ensembl_id ENSDARG00000038801

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031168 False 2441 mRNA 0.50 12 34112100 34126291
TCONS_00031169 True 2778 mRNA 0.46 11 34112117 34126879

Neighbor

gene id symbol gene type direction distance location
XLOC_015607 kif2c coding upstream 160079 33926606 ~ 33952021 (+)
XLOC_015604 NA coding upstream 203398 33899552 ~ 33908702 (+)
XLOC_015606 dre-mir-27a coding upstream 209645 33902325 ~ 33902455 (+)
XLOC_015605 dre-mir-23a-3 coding upstream 211588 33900435 ~ 33900512 (+)
XLOC_015603 NA coding upstream 213368 33897470 ~ 33898732 (+)
XLOC_015609 dars2 coding downstream 11497 34138376 ~ 34173489 (+)
XLOC_015610 NA coding downstream 54266 34181145 ~ 34356669 (+)
XLOC_015611 NA coding downstream 312566 34439445 ~ 34439731 (+)
XLOC_015612 NA coding downstream 351120 34477999 ~ 34478878 (+)
XLOC_015613 astn1 coding downstream 445811 34572690 ~ 34984255 (+)
XLOC_015601 NA non-coding upstream 340228 33759617 ~ 33771872 (+)
XLOC_015614 NA non-coding downstream 695689 34822568 ~ 34822884 (+)
XLOC_015616 NA non-coding downstream 1019417 35146296 ~ 35215487 (+)

Expression


Co-expression Network