XLOC_015612


Basic Information

Item Value
gene id XLOC_015612
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 34477999 ~ 34478878 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033603
TCCTTTGGTGCAGTGTTAGCCCCCAGAGGGGAGCGGTGCCCATGGAGGCAGTAAAAGGAACCGTGCTCGCTGGTGTTCTGCTCTTGTGATGTACAACTAACTTGCTCTTCCTGGAATTCCTGATCTGTTGTCATATCAAAGGAGAAGGTGCAGTGACCGGCTGAAGTCCTGTCTTTGCGGAGGGAGGTCAGTGGTTTTGTTTACACAATGGTGAGGCACATACAGAAGAGTCGCCTACACCCAGACACCCACACGGACTCTTTGGCTTACAGGACAGCCTTTCAAACAGTGCTGGCAGAGGCTCGTCTCCCCCTCACTGAGTCCATCACTGTGCTGTGGGCCTTTCTCTGCCCAGCTGCTGTAGGCATGCTGGGTTCTGAATTTGCAGAGCGGAGAGAGAGTAGGACAGAGTCGGCTGCGTGACGGCGGGGGGCAGAGGAAGCAGGCGAAAAGGCCAAACACCCCTGGAGGAGTTGAGGTCAGCCACAGTAATGCACCAAACACACTTTTTCTGTACTGTTTTGCGTTATGTGGTCTTGTTTTATGTGGACATACACATTCCCTTAAGCTGTAAACATccacttttatacagtagatgcTATTATTTGTAATTCGGGCCTGGTTGTGCCTGGGTGTCACCCAGACTGATGCTTAATTTGCTGGTTTggatcatagactgtaaaagatatggatgtagtatccgtgatgtcacccataggtttctgaagagagcaaatgaagctacaagtagccATGGCCAACCATCGCCATATTGTTCACGTGTCATCGCATTGACTGGGGGAtatcaaacaagggcaaagaggcggagcgtcagaggagctacagatgcctgctagcatttaaGCAACAAAGCATTTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033603 True 880 lncRNA 0.50 1 34477999 34478878

Neighbor

gene id symbol gene type direction distance location
XLOC_015611 NA coding upstream 38268 34439445 ~ 34439731 (+)
XLOC_015610 NA coding upstream 121330 34181145 ~ 34356669 (+)
XLOC_015609 dars2 coding upstream 304510 34138376 ~ 34173489 (+)
XLOC_015608 klhl20 coding upstream 351120 34112100 ~ 34126879 (+)
XLOC_015607 kif2c coding upstream 525978 33926606 ~ 33952021 (+)
XLOC_015613 astn1 coding downstream 93812 34572690 ~ 34984255 (+)
XLOC_015614 NA coding downstream 343690 34822568 ~ 34822884 (+)
XLOC_015615 cop1 coding downstream 637749 35116627 ~ 35137217 (+)
XLOC_015616 NA coding downstream 667418 35146296 ~ 35215487 (+)
XLOC_015617 tnr coding downstream 761607 35240485 ~ 35474115 (+)
XLOC_015604 NA non-coding upstream 569297 33899552 ~ 33908702 (+)
XLOC_015606 dre-mir-27a non-coding upstream 575544 33902325 ~ 33902455 (+)
XLOC_015605 dre-mir-23a-3 non-coding upstream 577487 33900435 ~ 33900512 (+)
XLOC_015618 NA non-coding downstream 1003278 35482156 ~ 35502933 (+)
XLOC_015619 FP236741.1 non-coding downstream 1033124 35512002 ~ 35581291 (+)
XLOC_015623 NA non-coding downstream 1133677 35612555 ~ 35614298 (+)

Expression


Co-expression Network