XLOC_015615 (cop1)


Basic Information

Item Value
gene id XLOC_015615
gene name cop1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 35116627 ~ 35137217 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031175
AACAAATCTCTGCGGAGTTGCATATCTACATTAGCATCGAGCAGACCTAAATGCGAGCCTTCTGCATGCAGAAAAAGCACCTCACTTGTGAAGAAATTTGCGCCTTTCAGTCCTAGCAGCGCGCTCGGTGGAAGTTCCTGCCTCTTTTCTCTTATTGGTGTTGCTTTAGCTAGTTAGCGTATCTCCCACAGCCGCCCGGATGCGGTGAAGCTCCGCAAATTTAGCTTCAGCTCTGGCCTTCCGACGTGCACGAACGGCTTCAATTATGTCAAGCACTCggcagcagcaacagcagcagtcCGGTGGTGCAGCGGGTTCCGTCCCTGGGACAAGCTCCGGGAGTTTGTGTAGCCTCAGCAGCAGCGGCGGCACCGGCGGAGCAAACAGTGGGAACAGCGCCGCTCAGAACGGGAGCAGCTCGGGTAACGGGGTGTCCTCGAGGACTCTGGGCTCGGTAGCCGACGGACAGAGCGCTCGTCTGGGCTCTTTAAGCAGGAAAAGACCCTTGTATAACGGTCTTATCAATCCCTATGAAGACAAGAGTAATGATTTTGTATGCCCTATATGTTTTGAGATGATAGAGGAAGCTCACATGACAAAGTGTGGCCACAGTTTCTGTTATAAATGTATACGACAGAGTTTGGAGGACAGCAACAGATGCCcaaaatgtaattacataattGACAATGTGGATCAACTTTACCCCAACTTCTTAGtgaatgaACTAATCTTGAAACAAAAACAGAGATCTGAGGAGAAGCGTCTAAAACGGGATCACCCTAATGGAACCAAATGGCAAGTTTTCCAGGATGTTCTTGGGGCTGATCAAGAGAATATGGATTTAGCAAATGTCAACTACATATTAGAGTACCTGctgcaaaaaaagaaacaacTGGAGGCGGAATCACAAGCTGCTCAGCGACAGATCTTAATGGAGTTCCTGAAGGAGGCCAGAAGAAATAAAAGAGAGCAACTGGAACAGTTACAAAAAGAACTGAACTTTTTGGAAGAGGATATTAAACGAGTGGAGGAAATGAGTGGTATGTATTCACCCATAAGTGACATGGACTGCAATTCAGACAGTACTGTGCCACAGGTTGAAGCTCCCTCTCCTGCACCCAGCAGTAGCATAATAGACCCTTCGGAATACATTCAGCCTCCTTTTGGTGGAAACTCACAgAGTAAAAGACAAACATGGTACAACAGCACTCTTGCATCACGGCGGAAGAGACTGACGGCACACTTTGAGGATCTGGAACAGTGTTATTTTTCCAATAGGATGTCTCGAATAACGGATGACAGCAGGACTGTTAACCAGCTGGATGATTTCATGGAGTGTCTATCAAAGTTTACCCGTTACAACTCTGTGAGGCCTCTGGCCACCCTCTCTTATGCTAGTGACCTTTATAATGGCTCCAGTATTGTGTCCAGCATCGAGTTTGACCGCGACTGTGATTACTTCGCCATTGCCGGTGTCACtaagaaaattaaagtgtttgAGTACGGCACTGTGATCCAAGATGCTGTGGACATTCATTATCCTGTCAATGAGATGACATGTAACTCTAAAATTAGCTGCATCAGCTGGAGCAGCTACCACAAAAACCTGTTAGCAAGCAGTGACTATGAGGGGACTGTCATTCTTTGGGATGGGTTTACTGGGCAGAGGTCAAAGGTCTACCAGGAGCATGAAAAGCGGTGTTGGAGTGTCGATTTCAACCTTATGGATCCCAAGCTCTTAGCGTCGGGATCAGATGACGCAAAAGTCAAGTTATGGTCCACCAACCTGGACAATTCAGTAGCCAGCATTGAAGCCAAGGCCAATGTATGCTGTGTTAAGTTCAGTCCAACCTCTCGATATCATCTTGCCTTCGGTTGTGCAGACCACTGTGTGCACTACTATGACCTGAGGAACACTAAGCAGCCCATCATGGTTTTCAAAGGCCACAGGAAAGCAGTATCCTATGCCAAGTTTGTCAATGGAGAAGAAATTGTCTCTGCCTCAACAGACAGCCAGCTGAAACTCTGGAACGTGAACAAGCCTCATTGTTTACGCTCTTTCAAAGGCCACATCAATGAGAAGAACTTTGTGGGTTTGGCATCAAATGGAGACTATGTAGCATGTGGTAGTGAAAACAACTCGCTGTACTTGTACTACAAAGGCCTTTCCAAGACGCTGCTGACATTCAAGTTTGACACTGTGAAGAGCGTCCTGGACAAGGACAAGAAGGAGGACGACACCAATGAGTTTGTCAGTGCAGTGTGCTGGCGAGCTCTACCTGATGGGGAGTCAAATGTGTTGATTGCAGCCAACAGTCAAGGAACAATCAAGGTACTTGAGCTGGTCTGAAGGTCCACTCGAATCAGTGGTCGGAGCCTAGTAAAGAACTTTTGCTTCTGGCGGCTTTCAAAGGGCGGCAGAACTGAAGCAAGTTTGTTTCTTTTCCAAGAAAACAGCCAGCAGAACTGGTTTCTATCAGCATTATATTTGCAAAAACTCAATCATTCTGCGTCGTCATACTATCGCTGTATGTGAAATGTTGAGATATGAGGACATGTTTGTGTCGACGGGGAGACAAGTGCAAATTCCACTATTTGAAATAAAGTTTTTGATGAA
>TCONS_00031176
GCAGCTCGGGTAACGGGGTGTCCTCGAGGACTCTGGGCTCGGTAGCCGACGGACAGAGCGCTCGTCTGGGCTCTTTAAGCAGGAAAAGACCCTTGTATAACGGTCTTATCAATCCCTATGAAGACAAGAGTAATGATTTTGTATGCCCTATATGTTTTGAGATGATAGAGGAAGCTCACATGACAAAGTGTGGCCACAGTTTCTGTTATAAATGTATACGACAGAGTTTGGAGGACAGCAACAGATGCCcaaaatgtaattacataattGACAATGTGGATCAACTTTACCCCAACTTCTTAGtgaatgaACTAATCTTGAAACAAAAACAGAGATCTGAGGAGAAGCGTCTAAAACGGGATCACCCTAATGGAACCAAATGGCAAGTTTTCCAGGATGTTCTTGGGGCTGATCAAGAGAATATGGATTTAGCAAATGTCAACTACATATTAGAGTACCTGctgcaaaaaaagaaacaacTGGAGGCGGTTGGTATAcgttttaaatatattacattattgtaACACTTCAGGGTTCCTT
>TCONS_00031177
CGCGACTGTGATTACTTCGCCATTGCCGGTGTCACtaagaaaattaaagtgtttgAGTACGGCACTGTGATCCAAGATGCTGTGGACATTCATTATCCTGTCAATGAGATGACATGTAACTCTAAAATTAGCTGCATCAGCTGGAGCAGCTACCACAAAAACCTGTTAGCAAGCAGTGACTATGAGGGGACTGTCATTCTTTGGGATGGGTTTACTGGGCAGAGGTCAAAGGTCTACCAGGAGCATGAAAAGCGGTGTTGGAGTGTCGATTTCAACCTTATGGATCCCAAGCTCTTAGCGTCGGGATCAGATGACGCAAAAGTCAAGTTATGGTCCACCAACCTGGACAATTCAGTAGCCAGCATTGAAGCCAAGGCCAATGTATGCTGTGTTAAGTTCAGTCCAACCTCTCGATATCATCTTGCCTTCGGTTGTGCAGACCACTGTGTGCACTACTATGACCTGAGGAACACTAAGCAGCCCATCATGGTTTTCAAAGGCCACAGGAAAGCAGTATCCTATGCCAAGTTTGTCAATGGAGAAGAAATTGTCTCTGCGTATGTATACACTCAAAgtccttgtgttttttttttttttcctttatcagTAGAAATAATTTGAGGACAAAAGTCAGTGGAAGAAGTTAAGGGTAGATCTGtctctattttttgttgtactaTATATATTGCAGCAAGATATATtgcttttta

Function

symbol description
cop1 Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Orthologous to human COP1 (COP1 E3 ubiquitin ligase).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04115 p53 signaling pathway
ko04712 Circadian rhythm - plant
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-070410-134 Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Orthologous to human COP1 (COP1 E3 ubiquitin ligase).

Ensembl:

ensembl_id ENSDARG00000079329

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031175 False 2617 mRNA 0.46 20 35116627 35137217
TCONS_00031176 False 540 lncRNA 0.42 5 35117040 35118755
TCONS_00031177 True 710 lncRNA 0.43 5 35126080 35129148

Neighbor

gene id symbol gene type direction distance location
XLOC_015613 astn1 coding upstream 132372 34572690 ~ 34984255 (+)
XLOC_015614 NA coding upstream 293743 34822568 ~ 34822884 (+)
XLOC_015612 NA coding upstream 637749 34477999 ~ 34478878 (+)
XLOC_015611 NA coding upstream 676896 34439445 ~ 34439731 (+)
XLOC_015610 NA coding upstream 759958 34181145 ~ 34356669 (+)
XLOC_015616 NA coding downstream 9079 35146296 ~ 35215487 (+)
XLOC_015617 tnr coding downstream 103268 35240485 ~ 35474115 (+)
XLOC_015618 NA coding downstream 344939 35482156 ~ 35502933 (+)
XLOC_015619 FP236741.1 coding downstream 374785 35512002 ~ 35581291 (+)
XLOC_015620 mrps14 coding downstream 454206 35591423 ~ 35594184 (+)
XLOC_015606 dre-mir-27a non-coding upstream 1214172 33902325 ~ 33902455 (+)
XLOC_015623 NA non-coding downstream 475338 35612555 ~ 35614298 (+)
XLOC_015626 BX571812.1 non-coding downstream 694112 35831329 ~ 35831445 (+)

Expression


Co-expression Network