XLOC_015771


Basic Information

Item Value
gene id XLOC_015771
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 40264625 ~ 40274512 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033621
GAAAAGCATAACATTAGGCAAAAAGCAAACTTGCTccaaaaatatgttaaataaaaacagaGCATAACATTACTTTCATGCAAAAACTAAAGCAGAAAGGGATAAATGTACCTTTCATTCAGTCTTCAATGGCAATGgaatatttgtagagcaacctgTCCTATCTAAAATAGTTCAGCCTTTCAGTTCTTTTGAATGAACGTTCCTCAAACCGGAAGTGAAACCAAAACATTGGAAAACTCGCTGCTCTCAAATTTGTGAGATGACTTTGCTGGTGTTCCCAACATTTACGATGTTTAAGAATATATATTGTTCTCAGTACTTAGGGAGCACTGGAGCAGTGAACACTTTGTGGGTTTTTAACGCGGCTACCCGCTACTGCCGATTTTAAAGTTTGatgctgctgtttttttatttaaagcaacaTAAGTGCACTTTCACGCGAGTGGGGAAAGTCAAACATAGAATCGAAGATTCGAACGACCAAATAGTGACCAATTTGGTCTGCCACAAATGAAACTAAAAGTGAATCCAAAAAGATCACGGAAGTCTAAATAAATCTGATCCTCCCAGTATTTTTTTCCTAAATGGATGCGCCCATTGTTGTTTTTAGGGGTGCACGTCAGATTTCAACAGTGATGAGAGGGTTAAATGAGGTCAAAATCAAAGGCCTGCATGCTGGAAAAGGGGGCCCCTCTGTTGGGGCAGATTATGCTGTGAACCTCACTCACTCATGACGGACCGTTTGCCGTGTTTGGAAACATTGGCCGTAATTGTGCCCCGAAGTCACAGCGTGAGCCCAGGGTGGGGGGCTTTCGCATGATTTTCAGCAGATCTCCCTGCTGAGGTCTGAAGCCGGGTCAGAGCTTAGCGATGGCTGGTTAACCTACTGACCATGACAGGTTTCAAGAGGAATTGAAGAATGTGCTGGAAAATGGTGGAATTTTCAACAGGCGGCAAGATGATTGCGCTTCCAACCGCATGTCAGAATGATGTTGTGCAGCGAGCCGGTGCGCTGAACTGCATACGTGCTGAAGGATCACAGGATTTTGCTCCTCGTCGGCTACAGTTACTTGGGCTTGAAGAACGAGCGATGTGTGCATTTATCAGCGCAGAAACAGGAAAGTTGGAATGATGGAGTGACAGACGGCATGGTAGCGGGAGAGGGTAAGATGAAAGGTGCATATGAGACCCCGCGCCGGCCCCAGATCTGATTAAGGTCCACTGATGTGTGAGATATTCACTCTCACTCTCACCAAGGAAGTGTGTCCTAATGGGCTTCACCCGTCTTGTTCCTTATCGCTGCCAACACTATTGCTATGGTTACCAACCTTTATCTGACTAACGCTATTATGTTGCAGTGCTCTCATGGTGCATCAGTGGGAGTCTGCAACATTTTTAGGGAGGCTTAAAATGTGTAGTTCTATAAACTAAAGTAATTCCGAAAGTGGATGGGAGTTGGTGAGGCTGGATATGCAGAGCCACA
>TCONS_00033291
GAAAAGCATAACATTAGGCAAAAAGCAAACTTGCTccaaaaatatgttaaataaaaacagaGCATAACATTACTTTCATGCAAAAACTAAAGCAGAAAGGGATAAATGTACCTTTCATTCAGTCTTCAATGGCAATGgaatatttgtagagcaacctgTCCTATCTAAAATAGTTCAGCCTTTCAGTTCTTTTGAATGAACGTTCCTCAAACCGGAAGTGAAACCAAAACATTGGAAAACTCGCTGCTCTCAAATTTGTGAGATGACTTTGCTGGTGTTCCCAACATTTACGATGTTTAAGAATATATATTGTTCTCAGTACTTAGGGAGCACTGGAGCAGTGAACACTTTGTGGGTTTTTAACGCGGCTACCCGCTACTGCCGATTTTAAAGTTTGatgctgctgtttttttatttaaagcaacaTAAGTGCACTTTCACGCGAGTGGGGAAAGTCAAACATAGAATCGAAGATTCGAACGACCAAATAGTGACCAATTTGGTCTGCCACAAATGAAACTAAAAGTGAATCCAAAAAGATCACGGAAGTCTAAATAAATCTGATCCTCCCAGTATTTTTTTCCTAAATGGATGCGCCCATTGTTGTTTTTAGGGGTGCACGTCAGATTTCAACAGTGATGAGAGACGTGCTGAAGGATCACAGGATTTTGCTCCTCGTCGGCTACAGTTACTTGGGCTTGAAGAACGAGCGATGTGTGCATTTATCAGCGCAGAAACAGGAAAGTTGGAATGATGGAGTGACAGACGGCATGGTAGCGGGAGAGGGTAAGATGAAAGGTGCATATGAGACCCCGCGCCGGCCCCAGATCTGATTAAGGTCCACTGATGTGTGAGATATTCACTCTCACTCTCACCAAGGAAGTGTGTCCTAATGGGCTTCACCCGTCTTGTTCCTTATCGCTGCCAACACTATTGCTATGGTTACCAACCTTTATCTGACTAACGCTATTATGTTGCAGTGCTCTCATGGTGCATCAGTGGGAGTCTGCAACATTTTTAGGGAGGCTTAAAATGTGTAGTTCTATAAACTAAAGTAATTCCGAAAGTGGATGGGAGTTGGTGAGGCTGGATATGCAGAGCCACA
>TCONS_00033290
AAATAGTTCAGCCTTTCAGTTCTTTTGAATGAACGTTCCTCAAACCGGAAGTGAAACCAAAACATTGGAAAACTCGCTGCTCTCAAATTTGTGAGATGACTTTGCTGGTGTTCCCAACATTTACGATGTTTAAGAATATATATTGTTCTCAGTACTTAGGGAGCACTGGAGCAGTGAACACTTTGTGGGTTTTTAACGCGGCTACCCGCTACTGCCGATTTTAAAGTTTGatgctgctgtttttttatttaaagcaacaTAAGTGCACTTTCACGCGAGTGGGGAAAGTCAAACATAGAATCGAAGATTCGAACGACCAAATAGTGACCAATTTGGTCTGCCACAAATGAAACTAAAAGTGAATCCAAAAAGATCACGGAAGTCTAAATAAATCTGATCCTCCCAGTATTTTTTTCCTAAATGGATGCGCCCATTGTTGTTTTTAGGGGTGCACGTCAGATTTCAACAGTGATGAGAGGGTTAAATGAGGTCAAAATCAAAGGCCTGCATGCTGGAAAAGGGGGCCCCTCTGTTGGGGCAGATTATGCTGTGAACCTCACTCACTCATGACGGACCGTTTGCCGTGTTTGGAAACATTGGCCGTAATTGTGCCCCGAAGTCACAGCGTGAGCCCAGGGTGGGGGGCTTTCGCATGATTTTCAGCAGATCTCCCTGCTGAGGTCTGAAGCCGGGTCAGAGCTTAGCGATGGCTGGTTAACCTACTGACCATGACAGGTTTCAAGAGGAATTGAAGAATGTGCTGGAAAATGGTGGAATTTTCAACAGGCGGCAAGATGATTGCGCTTCCAACCGCATGTCAGAATGATGTTGTGCAGCGAGCCGACGTGCTGAAGGATCACAGGATTTTGCTCCTCGTCGGCTACAGTTACTTGGGCTTGAAGAACGAGCGATGTGTGCATTTATCAGCGCAGAAACAGGAAAGTTGGAATGATGGAGTGACAGACGGCATGGTAGCGGGAGAGGGTAAGATGAAAGGTGCATATGAGACCCCGCGCCGGCCCCAGATCTGATTAAGGTCCACTGATGTGTGAGATATTCACTCTCACTCTCACCAAGGAAGTGTGTCCTAATGGGCTTCACCCGTCTTGTTCCTTATCGCTGCCAACACTATTGCTATGGTTACCAACCTTTATCTGACTAACGCTATTATGTTGCAGTGCTCTCATGGTGCATCAGTGGGAGTCTGCAACATTTTTAGGGAGGCTTAAAATGTGTAGTTCTATAAACTAAAGTAATTCCGAAAGTGGATGGGAGTTGGTGAGGCTGGATATGCAGAGCCACATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033621 False 1486 lncRNA 0.44 3 40264625 40274510
TCONS_00033291 False 1105 lncRNA 0.42 2 40264625 40274510
TCONS_00033290 True 1305 lncRNA 0.46 3 40264792 40274512

Neighbor

gene id symbol gene type direction distance location
XLOC_015770 NA coding upstream 42619 40218564 ~ 40222006 (+)
XLOC_015769 FP236331.1 coding upstream 79938 40181633 ~ 40184687 (+)
XLOC_015768 CU929371.1 coding upstream 207609 40056899 ~ 40057016 (+)
XLOC_015767 NA coding upstream 472179 39785747 ~ 39792446 (+)
XLOC_015766 zgc:136870 coding upstream 643522 39618951 ~ 39621103 (+)
XLOC_015772 epha4b coding downstream 19801 40294313 ~ 40514151 (+)
XLOC_015773 NA coding downstream 495560 40770072 ~ 40772051 (+)
XLOC_015774 NA coding downstream 708781 40983293 ~ 40985305 (+)
XLOC_015775 BX510333.1 coding downstream 761564 41036076 ~ 41036191 (+)
XLOC_015776 NA coding downstream 956404 41230916 ~ 41249001 (+)
XLOC_015764 CU179756.1 non-coding upstream 1194317 39059635 ~ 39070308 (+)
XLOC_015763 NA non-coding upstream 1212396 39051887 ~ 39052229 (+)
XLOC_015778 NA non-coding downstream 1303556 41578068 ~ 41583029 (+)

Expression


Co-expression Network