XLOC_015774


Basic Information

Item Value
gene id XLOC_015774
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 40983293 ~ 40985305 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033292
ggcgtgactcctttttcattgcccgggatttagcaggcagacgcagcttctgcaatggtcgacattaactgctcccagcagcggatctgattaacacgataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcagaggtgcatgcaGCTGCCCACAAGAAAATtttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaaagcatgatggctcctgtttggacttaccgatgtcctcgacttcaagtatccatcaaaactgtatacatttgagatatattagagactctttgtgggactggacattatgcatcctaaatcttcatcaaaatatgcaaatctcctcacttAGTTGCCTTagatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtacgtgtagccacattaatggcctattttgtagtcactattaaaaggaacatcgattgatattgaa
>TCONS_00033293
gtgtgggggttcagtttgttagcgctaacttagctaaagttagctcacctaagttatagcagcacattaaggatggatattaaatgcagaaacatatgcaacagttaagtagtgtgtgtttaacgtaagagaaagtacaacttaaagtttgtgttttagagatttattCCATAagtttttttaatgctgcatagtgaataaattacagatttacaatttattttaacttaaattacatttactactgatgtttacagaaccatttaaattgtatgcacctcattctaaaatgcatgttcttggtctttagataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcagaggtgcatgcaGCTGCCCACAAGAAAATtttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaaagcatgatggctcctgtttggacttaccgatgtcctcgacttcaagtatccatcaaaactgtatacatttgagatatattagagactctttgtgggactggacattatgcatcctaaatcttcatcaaaatatgcaaatctcctcacttAGTTGCCTTagatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtacgtgtagccacattaatggcctattttgtagtcactattaaaaggaacatcgattgatattgaatacatgttatggtctttaatccatc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033292 False 534 lncRNA 0.40 3 40983293 40985280
TCONS_00033293 True 771 lncRNA 0.35 2 40983679 40985305

Neighbor

gene id symbol gene type direction distance location
XLOC_015773 NA coding upstream 211242 40770072 ~ 40772051 (+)
XLOC_015772 epha4b coding upstream 469142 40294313 ~ 40514151 (+)
XLOC_015771 NA coding upstream 708781 40264625 ~ 40274512 (+)
XLOC_015770 NA coding upstream 761287 40218564 ~ 40222006 (+)
XLOC_015769 FP236331.1 coding upstream 798606 40181633 ~ 40184687 (+)
XLOC_015775 BX510333.1 coding downstream 50771 41036076 ~ 41036191 (+)
XLOC_015776 NA coding downstream 245611 41230916 ~ 41249001 (+)
XLOC_015777 acvr1l coding downstream 538933 41524238 ~ 41543762 (+)
XLOC_015778 NA coding downstream 592763 41578068 ~ 41583029 (+)
XLOC_015779 NA coding downstream 785806 41771111 ~ 41795569 (+)
XLOC_015768 CU929371.1 non-coding upstream 926277 40056899 ~ 40057016 (+)
XLOC_015767 NA non-coding upstream 1190847 39785747 ~ 39792446 (+)
XLOC_015783 NA non-coding downstream 1027771 42013076 ~ 42013350 (+)

Expression


Co-expression Network