XLOC_017989 (ches1)


Basic Information

Item Value
gene id XLOC_017989
gene name ches1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 16477570 ~ 16548912 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035468
AAGCCTCAGCGCACACCCCTGCTCGGGAAAAACTGAGATATAGGAAAAGAGAGAGAGGTCGAGACTGGAGGAACGCTGCGCTGTTGTtgtggtcggtcagtcagtcagtcagtccaggAGCGCTGCTCGGTGGAAATGGAGGAGCTGAAGTGCACCAACTGAGCAGCGAGGAGAGACGAATACATGTGGACGCGCTTATTCGGAGCTGATCAGGATTAAAAGGAGCCGGGGGCCGCATGGGTCCGGTGGTCATGCCTCCAGGTAAGAAGGCCGAGGGTCCCAGCAGTGGCAGTGTGGCGCGGGGTCTCAGTCCGCTCTACCAGGACACAGATGCAGCCGATCTTTCGCTGGCACTGTCGACCTCTCTCAGCCGGGCCGAGGATGAGGAGCTCACCAGCCTCAGCTGGCTGCATGAGAGCACTGACCTGCTGACCAGCCTGGGCCAGTCTGGCCTGCGCAGTGTCAGCCCTGTCCAGGATGCCAACGGAGCCCACGAGCCCTCGCCCTCGTCTTCCCCGGAACCCAACGAGCCGCCCTACCACCTGTCTACAGGACCCAGCCGCAAACCACCATACTCCTTCAGCTGCCTCATATTCATGGCCATTGAGGACGCCCCGTCGAAAAGACTGCCCGTAAAAGACATCTACGGCTGGATACTGGAACACTTCCCCTACTTCTCCAGTGCCCCGACTGGCTGGAAGAACTCAGTGCGACACAACCTGTCTCTCAATAAATGCTTCAAAAAGGTGGATAAGGATCGCAGTCAGagCATAGGAAAGGGTTCCCTCTGGTCTATTGACCCTGACTACAGACACAATCTGATTCAGGCTCTGAAGAAGACTCCATATCATCCATATTCCCCTCGGCTTCCAAAACCTTCTACCTCCCCATCTGCCTCTCCTCAGCAATACCACAGTCCTCCACTATGGCCAGGAAGTCCACTCTACAGAAAAAATGGAGGAGTGCTCTTACAAGttcCACAGAGAGTGATCCAGCACAGCTCACGCGTCACTGCTCAGGGGCTCTTTCCAGTTATCAGACCCCTTCCATTGAGTCCTGCGAGCAAGAGGACCACAGCCGTCAGATCAGCCCTGGGTGACTTTCTGACACGGGCTAAAAGCAGTCTACACACGGACTCCCCTCCTCCAGCCAGCGACGAGCATCAGGAGGAGCAGGACCACACGTACAGCAGCTCACAAGGGGACGccgtctcctcctcctcttcctcctgctcCATCACTCAGGGCTCCCTCACTGAGGTCAAGCTGGAGCAGAAAGACTTTCCTCTGGACGCCGCATCTCCTCCCACTTCCCAGCCGCCCCAGGTCCGGCGACCGATGTGGACCAAAGGAGACACGCTGCCCCTGAAGAAGAGGCGCGCCGAAAACATCCTGGtcaaagaagaggaggaggaagaggaggaggacgaGGAGATGAAGGAGGCGGCAGGGTCTCTGCTCCACCTGGCCGGCGTCCGCACCGCCGTCAGCAAAAACGCTTTACTGCGCAGAGTTCAGAAGGAGCTGAAAGAGGAGCTGAAAGAGGAAGCCAGCGATTAGCAATGAGCAAAAACATGcggcccacaaaaaaaaaaaaagaaacaaaacgcAGATCTAAATACTTCTGTTCAGGATATCAGGTGAATTCTGTAGTCAGTCGTTGCAATATTGATGAAATCACTGTTGTCCATTTTGTTTGGTTTGATTTGGTGGGCGGAAGATGATATTCATGCTCATGTtgatttgtgtgagtgtgtgtgagtgagggagagagtgtgtgagtgtgtgaagaGGGATAAAAGCCATAGTAAATTTGGATCATTTGAGTGAAAAGTGTTTTTTAGTTttctgattgtttgttttttaattcatcaagtctaaaaaaaatttaaggcaagATACTGCATGAACtataacaaattatttttaaactttaaggCAGCaatgattttttacagtgtggaaggGTATTACTAGCAAATGTATTATTAAACCATGAAAGTAATGACAGTATATgttgtgtaaaaacaaaaaaagtcaatcATGTTTCTTACCGAATCTTTTCAGGTAATTCAAGCTGTTTAAGtagtttaaaggtgctgtatgtaagtttttgactcttctaaatcataaaaataccatatAATAATTG
>TCONS_00035469
ATGGGTCCGGTGGTCATGCCTCCAGGTAAGAAGGCCGAGGGTCCCAGCAGTGGCAGTGTGGCGCGGGGTCTCAGTCCGCTCTACCAGGACACAGATGCAGCCGATCTTTCGCTGGCACTGTCGACCTCTCTCAGCCGGGCCGAGGATGAGGAGCTCACCAGCCTCAGCTGGCTGCATGAGAGCACTGACCTGCTGACCAGCCTGGGCCAGTCTGGCCTGCGCAGTGTCAGCCCTGTCCAGGATGCCAACGGAGCCCACGAGCCCTCGCCCTCGTCTTCCCCGGAACCCAACGAGCCGCCCTACCACCTGTCTACAGGACCCAGCCGCAAACCACCATACTCCTTCAGCTGCCTCATATTCATGGCCATTGAGGACGCCCCGTCGAAAAGACTGCCCGTAAAAGACATCTACGGCTGGATACTGGAACACTTCCCCTACTTCTCCAGTGCCCCGACTGGCTGGAAGAACTCAGTGCGACACAACCTGTCTCTCAATAAATGCTTCAAAAAGGTGGATAAGGATCGCAGTCAGagCATAGGAAAGGGTTCCCTCTGGTCTATTGACCCTGACTACAGACACAATCTGATTCAGGCTCTGAAGAAGACTCCATATCATCCATATTCCCCTCGGCTTCCAAAACCTTCTACCTCCCCATCTGCCTCTCCTCAGCAATACCACAGATCCCTCAGTCCTCCACTATGGCCAGGAAGTCCACTCTACAGAAAAAATGGAGGAGTGCTCTTACAAGttcCACAGAGAGTGATCCAGCACAGCTCACGCGTCACTGCTCAGGGGCTCTTTCCAGTTATCAGACCCCTTCCATTGAGTCCTGCGAGCAAGAGGACCACAGCCGTCAGATCAGCCCTGGGTGACTTTCTGACACGGGCTAAAAGCAGTCTACACACGGACTCCCCTCCTCCAGCCAGCGACGAGCATCAGGAGGAGCAGGACCACACGTACAGCAGCTCACAAGGGGACGccgtctcctcctcctcttcctcctgctcCATCACTCAGGGCTCCCTCACTGAGGTCAAGCTGGAGCAGAAAGACTTTCCTCTGGACGCCGCATCTCCTCCCACTTCCCAGCCGCCCCAGGTCCGGCGACCGATGTGGACCAAAGGAGACACGCTGCCCCTGAAGAAGAGGCGCGCCGAAAACATCCTGGtcaaagaagaggaggaggaagaggaggaggacgaGGAGATGAAGGAGGCGGCAGGGTCTCTGCTCCACCTGGCCGGCGTCCGCACCGCCGTCAGCAAAAACGCTTTACTGCGCAGAGTTCAGAAGGAGCTGAAAGAGGAGCTGAAAGAGGAAGCCAGCGATTAG

Function

symbol description
ches1 Predicted to enable DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human FOXN3 (forkhead box N3).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040217-1 Predicted to enable DNA-binding transcription factor activity and cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human FOXN3 (forkhead box N3).

Ensembl:

ensembl_id ENSDARG00000043553

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035468 False 2151 mRNA 0.51 6 16477570 16548912
TCONS_00035469 True 1332 mRNA 0.58 5 16478162 16498991

Neighbor

gene id symbol gene type direction distance location
XLOC_017988 gtf2a1 coding downstream 23967 16437741 ~ 16453603 (-)
XLOC_017986 si:dkey-52j6.3 coding downstream 73556 16332325 ~ 16404014 (-)
XLOC_017987 BX890559.2 coding downstream 120210 16356267 ~ 16357360 (-)
XLOC_017985 echdc2 coding downstream 254325 16205080 ~ 16223245 (-)
XLOC_017984 coa7 coding downstream 306273 16163142 ~ 16171297 (-)
XLOC_017990 NA coding upstream 193090 16742002 ~ 16743299 (-)
XLOC_017991 brms1lb coding upstream 281503 16830415 ~ 16849362 (-)
XLOC_017992 NA coding upstream 304181 16853093 ~ 16861776 (-)
XLOC_017993 CU855900.1 coding upstream 334643 16883555 ~ 16883922 (-)
XLOC_017994 psma6b coding upstream 335474 16884386 ~ 16906767 (-)
XLOC_017928 CU539064.1 misc downstream 6423869 10053405 ~ 10053701 (-)
XLOC_017981 BX842702.1 non-coding downstream 751305 15725659 ~ 15726265 (-)
XLOC_017980 NA non-coding downstream 843456 15631238 ~ 15634114 (-)
XLOC_017973 BX470128.1 non-coding downstream 1604240 14873030 ~ 14873330 (-)
XLOC_017968 BX465225.1 non-coding downstream 2021944 14454908 ~ 14455626 (-)
XLOC_017998 CU468139.1 non-coding upstream 1093897 17642809 ~ 17642923 (-)
XLOC_017999 CR759908.1 non-coding upstream 1235535 17784447 ~ 17784568 (-)

Expression


Co-expression Network