XLOC_017994 (psma6b)


Basic Information

Item Value
gene id XLOC_017994
gene name psma6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 16884386 ~ 16906767 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035474
atttaggTCAGCAGTAAGTATAACTTAAAAACgtacacattattaaacattacacAACACTTTACGCAACAATCATGCATTTTAAAGCTGTttcgtttaaaataaataaatacaaataatttgttttgcGTTTGATGTTGACCCGGAAACACAATCGCTGCTGTCTGAAGATTGCTTCCGGTTCATTCGTTCTGCATGTTGCTGTTCAGTCAAGCCTATAATACTTTTACTTTTCTACGTTTAATACATTTGTTATAAAGATGTCCCGGGGCTCTAGCGCGGGGTTTGATCGTCACATCACTATCTTTTCTCCGGAGGGAAGACTGTATCAAGTAGAATATGCATTCAAGGCCATAAACCAGGGTGGTCTGACATCAGTTGCTGTTCGAGGAAAAGACTGTGCGATTGTTGTAACACAGAAAAAAGTCCCAGACAAGTTGCTGGATTCATCAACCGTCACGCACTTATTCAGAATTACAGAGAACATTGGCTGTGTGATGTCCGGGATGACAGCTGACAGCCGGTCTCAAGTACAGCGAGCTCGATATGAGGCCGCCAACTGGAAGTACAAGTACGGCTATGAAATTCCTGTTGACATGCTTTGTAAAAGGATCGCTGACATCTCTCAGGTTTATACACAAAATGCGGAGATGAGGCCACTCGGCTGCTGCATGATTGTGATTGGTCTAGATGAGGAGCTCGGCCCGCAAGTGTATAAATGTGATCCTGCAGGCTATTACTGTGGCTTTAAGGCCACGGCTGCAGGTGTAAAGCAGACAGAGGCCACAAGCTTCCTGGAGAAAAAAGTCAAGAAGAAGCTTGACTGGACATTTGAGCAGGCAGTCGAGACGGCGATCACTTGTTTAACAACTGTTCTGTCGATTGATTTCAAGCCATCGGAGCTGGAAATAGGCGTCATTACAGCAGAGGATCCGAAATTCAGTTCATCCGTGTTTAACAGTACCACCGCTGTCGGCCCCAGGACGAGGCAGCATGTATCCATCTCTTGGAGCTCCAAAAATGGATTGGCGTCCCAGGACTCGACACAGGCATTGAGCACCTACAGCTGCTTTACATTGTGGGCAATGTAG
>TCONS_00035475
GGAAACACAATCGCTGCTGTCTGAAGATTGCTTCCGGTTCATTCGTTCTGCATGTTGCTGTTCAGTCAAGCCTATAATACTTTTACTTTTCTACGTTTAATACATTTGTTATAAAGATGTCCCGGGGCTCTAGCGCGGGGTTTGATCGTCACATCACTATCTTTTCTCCGGAGGGAAGACTGTATCAAGTAGAATATGCATTCAAGGCCATAAACCAGGGTGGTCTGACATCAGTTGCTGTTCGAGGAAAAGACTGTGCGATTGTTGTAACACAGAAAAAAGTCCCAGACAAGTTGCTGGATTCATCAACCGTCACGCACTTATTCAGAATTACAGAGAACATTGGCTGTGTGATGTCCGGGATGACAGCTGACAGCCGGTCTCAAGTACAGCGAGCTCGATATGAGGCCGCCAACTGGAAGTACAAGTACGGCTATGAAATTCCTGTTGACATGCTTTGTAAAAGGATCGCTGACATCTCTCAGGTTTATACACAAAATGCGGAGATGAGGCCACTCGGCTGCTGCATGATTGTGATTGGTCTAGATGAGGAGCTCGGCCCGCAAGTGTATAAATGTGATCCTGCAGGCTATTACTGTGGCTTTAAGGCCACGGCTGCAGGTGTAAAGCAGACAGAGGCCACAAGCTTCCTGGAGAAAAAAGTCAAGAAGAAGCTTGACTGGACATTTGAGCAGGCAGTCGAGACGGCGATCACTTGTTTAACAACTGTTCTGTCGATTGATTTCAAGCCATCGGAGCTGGAAATAGGCGTCATTACAGCAGAGGATCCGAAATTCAGGATCCTATCAGAGTCAGAGGTGGACACTCATCTGGTGTCTCTGTCCGAGAGGGACTGAAGTCTCCTGCTGTTTTCTTGTAAATTTCCTGTTCCATTaaagacatttgaaaaaaaaaaaa

Function

symbol description
psma6b Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in myocardial infarction. Orthologous to human PSMA6 (proteasome 20S subunit alpha 6).

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-329 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in myocardial infarction. Orthologous to human PSMA6 (proteasome 20S subunit alpha 6).

Ensembl:

ensembl_id ENSDARG00000013966

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035474 False 1091 mRNA 0.45 7 16884386 16906767
TCONS_00035475 True 918 mRNA 0.46 7 16888561 16906623

Neighbor

gene id symbol gene type direction distance location
XLOC_017993 CU855900.1 coding downstream 464 16883555 ~ 16883922 (-)
XLOC_017992 NA coding downstream 22610 16853093 ~ 16861776 (-)
XLOC_017991 brms1lb coding downstream 35024 16830415 ~ 16849362 (-)
XLOC_017990 NA coding downstream 141087 16742002 ~ 16743299 (-)
XLOC_017989 ches1 coding downstream 335474 16477570 ~ 16548912 (-)
XLOC_017995 si:ch73-74h11.1 coding upstream 39365 16946132 ~ 16972446 (-)
XLOC_017996 si:dkey-5n18.1 coding upstream 132136 17038903 ~ 17041025 (-)
XLOC_017997 AL928808.1 coding upstream 350334 17257101 ~ 17259573 (-)
XLOC_017998 CU468139.1 coding upstream 736042 17642809 ~ 17642923 (-)
XLOC_017999 CR759908.1 coding upstream 877680 17784447 ~ 17784568 (-)
XLOC_017928 CU539064.1 misc downstream 6830685 10053405 ~ 10053701 (-)
XLOC_017987 BX890559.2 non-coding downstream 527026 16356267 ~ 16357360 (-)
XLOC_017981 BX842702.1 non-coding downstream 1158121 15725659 ~ 15726265 (-)
XLOC_018000 NA non-coding upstream 1109695 18016462 ~ 18019306 (-)
XLOC_018001 NA non-coding upstream 1283749 18190516 ~ 18195318 (-)
XLOC_018005 NA non-coding upstream 1481092 18387859 ~ 18388619 (-)

Expression


Co-expression Network