XLOC_018002 (psma8)


Basic Information

Item Value
gene id XLOC_018002
gene name psma8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 18306122 ~ 18313864 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035482
ACATCCTATGCGCTCGGTGATTGCGCACGCGCAGATCAATTTCGAAACCTCCTGTGCTGTGCTGCTAGTCGAAAGTCAGAGGCAACTATTTCACAGCAATTCGCGCTTTTGTGTCTAGTGTGCAGAAATGGCAGCTAGATACGACAGAGCTATAACAGTTTTCTCTCCAGACGGTCACTTGTTTCAGGTGGAATATGCGCAGGAAGCAGTAAAGAAGGGCTCCACAGCTGTTGGAATCAGGGGAAAAGATATTGTTGTGCTGGGTGTTGAGAAGAAGTCAGTGGCGAAGCTTCAGGAAGAGAGGACGGTCAGGAAGATCTGTGCTTTGGATGAACATGTGTGCATGGCCTTCGCAGGTCTGACAGCAGATGCCAGGATTGTGATCAACAGAGCACGAGTAGAGTGTCAGAGCCACAGACTCACAGTGGAAGACCCCGTAACTGTGGAGTACATCACCCGCTACATCGCCACACTCAAACAGCGCTACACTCAAAGCAATGGACGTCGTCCGTTCGGCATCTCGGCCCTGATTGTTGGTTTCGACTATGATGGGACCCCACGTCTCTATCAGACAGACCCTTCTGGAACATACCACGCATGGAAGGCAAACGCCATCGGCCGCAGTGCGAAGACGGTGAGGGAGTTTCTGGAGAAGAACTACACAGATGAAGCCATCGCCAGTGATAATGATGCCATCAAGCTGGCCATCAAAGCCTTACTGGAGGTTGTGCAATCCGGGGGCAAGAACATCGAGCTGGCAGTGATCCGAAGAAACCAGCCCCTTAAGATTCTGGAGTCCAAAGAGATTGAGACGCTGGTCGCCGAAATAGAGaaggagaaagaggaggaggcAGAGAAGAAGAAGCAGAAGAAGTCTTCGTAAATCAGATTCTCTCTTGGTTTTGTTTATATGGGCAGATGCACTTGGCTCAGGCTCTCACTGTAcaccttcctcctcctcttcatctgtTAAGAGCACAGACTCTTGGTCTTCTGCTGAACCACGGCATCAatgaatatgtttgttttttttccccaggaAATATTTTTAAGATCCTAGTAATCAAAGCATGTTCAGGGATGAGAGCTGCCAGTTGTTCATTTGTTGAGCATGTACTGTGGTCAGCCTCTTGATTTTGGTCAGTTTTCTTGCTCAACTTTCGACCACTGCTCAGAATTCTGGGAGAATGTGCTCTGACTGATGTTTCCTAATAAACTGTTTTGGTTTGTACTAA
>TCONS_00035483
TGTGCTGCTAGTCGAAAGTCAGAGGCAACTATTTCACAGCAATTCGCGCTTTTGTGTCTAGTGTGCAGAAATGGCAGCTAGATACGACAGAGCTATAACAGTTTTCTCTCCAGACGGTCACTTGTTTCAGGTGGAATATGCGCAGGAAGCAGTAAAGAAGGGCTCCACAGCTGTTGGAATCAGGGGAAAAGATATTGTTGTGCTGGGTGTTGAGAAGAAGTCAGTGGCGAAGCTTCAGGAAGAGAGGACGGTCAGGAAGATCTGTGCTTTGGATGAACATGTGTGCATGGCCTTCGCAGGTCTGACAGCAGATGCCAGGATTGTGATCAACAGAGCACGAGTAGAGTGTCAGAGCCACAGACTCACAGTGGAAGACCCCGTAACTGTGGAGTACATCACCCGCTACATCGCCACACTCAAACAGCGCTACACTCAAAGCAATGGACGTCGTCCGTTCGGCATCTCGGCCCTGATTGTTGGTTTCGACTATGATGGGACCCCACGTCTCTATCAGACAGACCCTTCTGGAACATACCACGCATGGAAGGCAAACGCCATCGGCCGCAGTGCGAAGACGGTGAGGGAGTTTCTGGAGAAGAACTACACAGATGAAGCCATCGCCAGTGATAATGATGCCATCAAGCTGGCCATCAAAGCCTTACTGGAGGTAAACAACACATTCCCTTAGTTACATGTTCACAACACACACTCATGTCATGAAGCTGGCAGGACGCAACATGTTTGCTGAGGCAGTTGTGTGTGATCTGTGCTGCACAGGTTGTG

Function

symbol description
psma8 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA8 (proteasome 20S subunit alpha 8).

GO:

id name namespace
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2194 Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex. Predicted to be active in nucleus. Orthologous to human PSMA8 (proteasome 20S subunit alpha 8).

Ensembl:

ensembl_id ENSDARG00000010965

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035482 False 1235 mRNA 0.48 7 18306122 18313864
TCONS_00035483 True 783 lncRNA 0.50 5 18306749 18313807

Neighbor

gene id symbol gene type direction distance location
XLOC_018001 NA coding downstream 110804 18190516 ~ 18195318 (-)
XLOC_018000 NA coding downstream 286816 18016462 ~ 18019306 (-)
XLOC_017999 CR759908.1 coding downstream 521554 17784447 ~ 17784568 (-)
XLOC_017998 CU468139.1 coding downstream 663199 17642809 ~ 17642923 (-)
XLOC_017997 AL928808.1 coding downstream 1046549 17257101 ~ 17259573 (-)
XLOC_018003 gpr132b coding upstream 31654 18345518 ~ 18351510 (-)
XLOC_018004 vipas39 coding upstream 38906 18352770 ~ 18382892 (-)
XLOC_018005 NA coding upstream 73995 18387859 ~ 18388619 (-)
XLOC_018006 cdc42bpb coding upstream 77996 18391860 ~ 18536474 (-)
XLOC_018007 NA coding upstream 234426 18548290 ~ 18550782 (-)
XLOC_017928 CU539064.1 misc downstream 8252421 10053405 ~ 10053701 (-)
XLOC_017993 CU855900.1 non-coding downstream 1422200 16883555 ~ 16883922 (-)
XLOC_018008 NA non-coding upstream 251894 18565758 ~ 18569419 (-)
XLOC_018012 BX510941.1 non-coding upstream 622591 18936455 ~ 18942965 (-)
XLOC_018014 NA non-coding upstream 856068 19169932 ~ 19174123 (-)

Expression


Co-expression Network