XLOC_018005


Basic Information

Item Value
gene id XLOC_018005
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 18387859 ~ 18388619 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036814
AAGAAAAGGAAGtgttttctaaaatgaagaaaaacaatcAGAAACAACACAAAGTGATTTAGGCAGTAACATGGAGGGCTGTCAAATAAGACTCGAGACTCTAAAAAGAGCAGAAGAGAAAACACCAGGAATAGCATGAAGCAAAGAAAGAATGAAGATGTAGCTTTGTGCTCGGTGTGTTCCTCTACCTCCTCTTGTCTAGCTGCTGCGCAGGATTTGGGCTCGTTGGATTGAACCACTGGTGCTCTTCAACCTGATGTAACTGTAGCCGCTTCTCTGGATGGCGGaccaaacactgggaaatcaGCTCCAGGCATGCTGAAAAGTGTCACAGAGAGTGTGAAATATGTCTCAAGATTCATGAACGTGTTTAAATCTTACAAcatcaaatgttacaaaacatcCACAATTAAATAACTGTAATATCTACAGTGCCTGTAAGCATTATATTTCATCCTGTTTTACTCTTGACTGACATATTTCATTCTGTCTCCGAGGCTGAGATCGTTTTGAGGTGTCTGCTTACCTGAAGATAAGGTGAGGTCTGTCTTAAGTTTTCCAATGATTATCGAACGTGTGTTGGTAAAGGCCAATCGTCTGTGCAATATTTCATACAGGATGAGGCCTATTGTCCAGACGTATGCCGGGTTAGGAAAGAATGTGGGA

Function

GO:

id name namespace
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036814 True 666 lncRNA 0.41 2 18387859 18388619

Neighbor

gene id symbol gene type direction distance location
XLOC_018004 vipas39 coding downstream 4967 18352770 ~ 18382892 (-)
XLOC_018003 gpr132b coding downstream 36349 18345518 ~ 18351510 (-)
XLOC_018002 psma8 coding downstream 73995 18306122 ~ 18313864 (-)
XLOC_018001 NA coding downstream 192541 18190516 ~ 18195318 (-)
XLOC_018000 NA coding downstream 368553 18016462 ~ 18019306 (-)
XLOC_018006 cdc42bpb coding upstream 3241 18391860 ~ 18536474 (-)
XLOC_018007 NA coding upstream 159671 18548290 ~ 18550782 (-)
XLOC_018008 NA coding upstream 177139 18565758 ~ 18569419 (-)
XLOC_018009 enpp5 coding upstream 332692 18721311 ~ 18736281 (-)
XLOC_018010 ccm2 coding upstream 385510 18774129 ~ 18794789 (-)
XLOC_017928 CU539064.1 misc downstream 8334158 10053405 ~ 10053701 (-)
XLOC_017999 CR759908.1 non-coding downstream 603291 17784447 ~ 17784568 (-)
XLOC_017998 CU468139.1 non-coding downstream 744936 17642809 ~ 17642923 (-)
XLOC_017993 CU855900.1 non-coding downstream 1503937 16883555 ~ 16883922 (-)
XLOC_018012 BX510941.1 non-coding upstream 547836 18936455 ~ 18942965 (-)
XLOC_018014 NA non-coding upstream 781313 19169932 ~ 19174123 (-)
XLOC_018017 BX842692.1 non-coding upstream 993808 19382427 ~ 19385077 (-)

Expression


Co-expression Network