XLOC_018011 (xkr6b)


Basic Information

Item Value
gene id XLOC_018011
gene name xkr6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 18801525 ~ 18915376 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035497
GGAAGTGACGTCACAAGCCTCGGAAACCGGAGGTGTGCGCTTTGGAGAGCAAGATGGCAGCGAAATCCGACGGTCGGGGGGTCGCCACCGGTTTCGCCCAGCTGCACAACCTGGACGAGGCGGTGGGGAGCTGCGAGGACGACCCGCGGCAGGGCAGCTCCTTCCACATATGCCACTGCTGCAACACCTCGTCGTGCTACTGGGGCTGCCGGAGCGCCTGTCTGCATTACCTCCTGGACAAGGGGAGAGACGTCAGGCGGCCCCCTCATGAGGAGCGCCTCTGGTTGGACTGCCTGTGGATCGTCCTCGCGCTGCTCGTCTTCTTCTGGGACGTGGGCACCGACTTATGGCTCGCGCTCGACTACTACGCCAAGCAGGACTACCTCTGGTTCGGACTAACACTGTTCTTCGTGCTGGTGCCGTCGGTCCTGGTCCAGATCCTGAGCTTCAGGTGGTTCGTGCAGGATTACACGGGGGGCGGCTTGGGCTCCGTGGAGGGTCTCAGCAGCACCCGGAGATCCACGAGCGCAGTGGTCTACAACAGGGCCAGATGCTGTCGCGTCTCAGTGTGGGTCTGGCAGACGCTCATTCACATCCTTCAGATGGGACAAGTGTGGAGGTACATCAGAACAATGTATCTGGGCATCCAGAGCCGGAGGCAAAAGGAGAACCAGCGACGCTTCTACTGGGCCATGATGTACGAGTATGCCGATGTCAACATGCTCCGTCTACTGGAGACATTTCTGGAAAGTGCTCCACAGCTGGTGCTCCAGCTCTGCATCATGATCCAGAAGAACCGGGCCGAAACGCTACAGTGTGTGTCGGCAGTCACGTCTCTCCTCTCTCTTTCCTGGGTTCTGGCCTCATACCACAAGCTTCTGCGTGATTCCCGCGATGACCAAAAGAGCATGAGCTACCGGGGAGCACTGGTGCATCTCCTGTGGCGATTCTTCACCATTTCCTCTAGGGCGCTCTCTTTCGCCCTCTTTGCCTCGGTTTTCCACCTCTACTTTGGCATTTTTGTGGTGCTGCACTGGTGTGCCATGGCCTTCTGGGTAATCCACGGAGGCACCGACTTCTGTATGTCCAAGTGGGAAGAGGTGCTATTCAACATGGTGGTCGGCGTTGTCTACGTCTTCTGCTGGTTTAACGTCAAGGAGGGAAGGACCCGATACCGCATGGTGTTTTATTACTCGCTGGTGCTGGTGGAAAACACCATCCTTACCGCTCTCTGGTATGCCTACAGAGACCCAGTCTCTACGGACTCTTACGCCGCATCTGCCCTGTGTGGCGTCTTCCTGTGCTTTGCTTCCGGAGTGGCTTGCATGGTTCTTTACTATGGGGTCCTGCATCCTATGGGGCCCCGGCTGAGGGTGCTGGCCAGTTCCTGCTGTGCCGAGCTCCTTTGGGGCCTCCCTTTACCACCCGAGGCTGAGCCCATGGCACCCACTCCAGGGCCCCGAGGCTCCCAAGCGACCCCGACCAGGGGCATGGCTTCAGGGGATTACAGTGAACCAGAAGAAGCCGCCACAGACACTTGCCTGCCAGTGTTTCAGGTGAGATCAACTGAGCCCACCGATGCGTCGGGACGGCCCATTCCTCCAAAAGGGCCCCTAATCAAGATTGATATGCCCAGGAAACGCTACCCAGCTTGGGATGCTCACTTTGTGGACCGCCGTTTGCGGCGGACCATAAATATCCTCCAGTTCATCAGCCCCAACGCAGTGGGCATCAGGTACAGGGATGGACCCCTCCTCTACGAGCTGCTCCAGTACGAGTCCTCCCTATAAAAACGTGCAATGATGCCGCTTTTCTCTACTCTCTCGACCCTCTCTAGTTCTCTGGTTCCTTTGGTGCTTTTTTCTTcagagtttttattatttagttgtaCTCTCAAGCTAAAAGAGTGCATCTAAGGTCTAAACAGAGAATATTCAACATATATTTTGACTAACACAGTGTAGAGTTAAGGAACAAAATGTCCAAAATACAACATTCCCTAGTTTGGGTTACTCTGGTGTGAATGTTCGACtaatactgtatgtatgtttGATGGTGTTTGTGTTCCTGTCACCTCTGAGATGTGCATGATGGGAATGATGGAGGAACGTAGTCTCTGGCATCCTCATTCTGATTTTGCTTTTACCATTTTGTgcctatgtttttgttttttcctaaACAGTTGTACCGACAGCTGATCTTAGATGATGGTAAGAAAAGTCAACATTAGCTTAGACTCTAAAAAGCACATTTGATTGTCAGATGAAGCACACAAAACACCATTCCTGTTCTCCAGTGATTATGGGGGAAGAGGCTTTAAATTGTTGTCAAATTGCTTTTAAACAGAACAGCAACTTTTTGTGTAAAATTCAGTGATGTCATGTAAAAATTGGTGTCAAATTTGGGTGTTGGCCTACCACGTAACACTGCCACTGCTACTGTAATCATGAAGGGCCTTAATATTTATCTCAACATGTATTTTCCTACTGAAACTCACTAGTGATGTAAAATCGATCATTTCTTTTGCATATGGCCCactattataaatgaataaatggtgcATAA

Function

symbol description
xkr6b Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in female organism. Orthologous to human XKR6 (XK related 6).

GO:

id name namespace
GO:0070782 phosphatidylserine exposure on apoptotic cell surface biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:1902742 apoptotic process involved in development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-153 Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in female organism. Orthologous to human XKR6 (XK related 6).

Ensembl:

ensembl_id ENSDARG00000043410

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035497 True 2565 mRNA 0.52 3 18801525 18915376

Neighbor

gene id symbol gene type direction distance location
XLOC_018010 ccm2 coding downstream 6736 18774129 ~ 18794789 (-)
XLOC_018009 enpp5 coding downstream 65244 18721311 ~ 18736281 (-)
XLOC_018008 NA coding downstream 232106 18565758 ~ 18569419 (-)
XLOC_018007 NA coding downstream 250743 18548290 ~ 18550782 (-)
XLOC_018006 cdc42bpb coding downstream 265051 18391860 ~ 18536474 (-)
XLOC_018012 BX510941.1 coding upstream 21079 18936455 ~ 18942965 (-)
XLOC_018013 BX510941.2 coding upstream 59614 18974990 ~ 19011956 (-)
XLOC_018014 NA coding upstream 254556 19169932 ~ 19174123 (-)
XLOC_018015 si:dkey-71h2.2 coding upstream 361556 19276932 ~ 19366022 (-)
XLOC_018016 si:ch211-278j3.3 coding upstream 458052 19373428 ~ 19422496 (-)
XLOC_017928 CU539064.1 misc downstream 8747824 10053405 ~ 10053701 (-)
XLOC_018005 NA non-coding downstream 412906 18387859 ~ 18388619 (-)
XLOC_018001 NA non-coding downstream 606207 18190516 ~ 18195318 (-)
XLOC_018000 NA non-coding downstream 782219 18016462 ~ 18019306 (-)
XLOC_018017 BX842692.1 non-coding upstream 467051 19382427 ~ 19385077 (-)
XLOC_018020 NA non-coding upstream 627767 19543143 ~ 19546588 (-)
XLOC_018021 dre-mir-206-1 non-coding upstream 629272 19544648 ~ 19544746 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_00414617_00476423 XKR6B, XKR6 coding CI01000051 null 414617 ~ 476423 (+)
bowfin (Amia calva) AMCG00004154 LOC107723320,LOC107746102,LOC107701509,LOC107561941,LOC105897758,LOC105895740 coding CM030121.1 CM030121.1 35642527 ~ 35643105 (-)