XLOC_018012 (BX510941.1)


Basic Information

Item Value
gene id XLOC_018012
gene name BX510941.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 18936455 ~ 18942965 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035498
TCAAATGGAAAATAATATGTCAGCTGTGATTTTTACTCGAGTTAATACGATCACGACTGACTTTGTCAACGAAAATCATCAGAGTGACACGATGGCTTCTCTTACACCTCCAACCGTAATGAGAAGCCCAACAGaaAACCAAGAGAAAAGGAGGAAAGGGAATAAAGTCTCTGCTTTCTTTAAGAGAGCATGGAAGGCGGTAAAGCGCCCTTTCCTTTGCTGTGACCGGAACAGAGTGGTTCCCTTTGAACCACGGTCAGATATCGACGATTTCAAACACCTGCCTGTTCCAGGTCCCTCCAGGACCGTCACAGCACATGCAGCAGATCTTGAGCCGGTGTGTCCGCCAGGCCAGGTCTGTGAAGATCCTAAGCTGTTGAGTGTTCCGGGCCCTTTCAGCATCAAGCAAACAGCAGATGTGCCAAATGCAGATCCGGCCCGTCCTGAGTCCTCAACGGCCTTCACAGGTCATGTTGATACTGAGCTGGTGTGTCTGCCAGGCCAGATCTGGGAAGATCCTCAGCCAATCAGTGTCCATGGCCCTTCCAATATTAAGAAAATGACGGATGCAGATTCGGCCTGTCCTGAGTCGCCTCCGTCTGTTCAAGACCCCTGTAAAATTGATGGGACTGATGaaaaacccAAGAAGGGAAGGAAAGGCAAAAGAGTCTCTGCTTTCTTTAAGAGAGTATGGATGGCTGCAAGGCGCCCTTTCCTGTGCTGTGACACAGATATAGTCCAGCATCTTACACCACATCCTGAGCCCGAGCCAGAGTCCGAGCCTGGGCTCACTCATGgaTCTACGATGTCTCTTTTTGAAATAAAAGacctgattggagaaggaagctATGGCAAGGTGTATCTGGTATCTCACGTATTTGATCAGAGTCTAAAGGATGGTCATTCTGAACCTGTGCTTGCGGAAGTGGCAATGATGCTCAGGTTGATGAATGACCCAACTTGTCCCAGCATCATCGGATTGCACCACTGGGTTGAGAATAAGAAGGACTTCTATCTCATTCTGGAGTACGCAGAGTCATCCCAGATCTTGGCTCGTTACGTCAGACGTACATCGGGCATTGATGAAAACCAAGCTCGCCGGTTAATGCGTCAGTTGATCCAAGCCGTCAAGTTCTGCGCTGAGCGTGGAGTTTTCCATGGTGATATCCACGCGGGGAACATCCTGGTGATTCAACCCCGATTAGAGCTCAAACTGATTGACTTTGGTTGTGCTCGACCAATTACCAGCGAACCTTTCAAAAGCCGTGATTATGGAGGAGCCATAGTTTACACACCACCTGAGATCTTGAGGGATCCCACATTCTTTCCTAACCCGGCATACGTCTGGACAATAGGCCTCATCTTGTATGAAATATTGCACAGACGATTGGCCTTTACCAACACACGTTCGATAATCATTGGAAAACTTAAGACAGACCTCACCTTATCTTCAGCATGCCTGGAGCtgatttcccagtgtttggtCCGCCATCCAGAGAAGCGGCTACAGTTACATCAGGTTGAAGAGCACCAGTGGTTCAATCCAACGAGCCCAAATCCTGCGCAGCAGCTAGACAAGAGGAGAAAACACTAGAGAAGCGAGGAGGAGAAGAGCAGCATTTCCAGACATTCCACAAAACTGTTAAACTTATTAATTattccctcatgtcattccaaacccctaaGACCTTCCTTTTCTTCACTGTCAGTCGTGGAGTGTATTGATGAGAGCTCTGtcctgcactgtatgtgtgtcgcactgctgacgtttacctcagatgtgcccacgctttgtttaaatgagaggaagtcgcgcaggtCTCTGGGTTATACGTCAGCAGCGTGAGCAAATGCAACACATATACAGTGCAGTACAGCACTTctcaaCAGTGTGACAGGCACACATTGaactcagatttcatctaaaatgttttcatttctgtTCTCAATATGAACTAAACATGAATATGAACTAAGGACATGAGGTGAGCaattaatgacaataatggtAATTAAacaccgcagctctgcacaagacgtttggccataggagaaatggtcgtgcccaactgagcctggtttctctcgaggttttttccttcacttttgtcaattggtgaagttttgttcctcgccgctgtcgcctctggcttgcttggttgggacttgtggagctgcgcatcgatggatttgctcttcagtgtttggactttcagcattgacaattaaaccacactgaactgaactgaacttctactctgaaaactggactgacccagtttcaatttacttctatgttaagctgctttgacacaatgcacattataaaagcgctatagaaatgaagatgaattgaactgaactggaTTTCTCCTCTAAAGTTTCATCAAAGATCTGCTCAACTTTTTCTGCTTTATAATTGAATCTGGTGTTCTCTCATAAGAGAGTCTGATTGTTTTATAATCAAGTATTCATAATTGTTTTGTAATGTATTGTTCTTTGAATTGTTTTGTAATGAATTGCTTTTATATGCtgtcaataattcaaataaaatcctGTGAATCAAA
>TCONS_00036817
ATGTCTCTTTTTGAAATAAAAGacctgattggagaaggaagctATGGCAAGGTGTATCTGGTATCTCACGTATTTGATCAGAGTCTAAAGTTTGCCCTGAAGCGAATCAAGAAGCGTAAACGGGACCGTTATCTCGATGTTGTAAGTGATGGTCATTCTGAACCTGTGCTTGCGGAAGTGGCAATGATGCTCAGGTTGATGAATGACCCAACTTGTCCCAGCATCATCGGATTGCACCACTGGGTTGAGAATAAGAAGGACTTCTATCTCATTCTGGAGTACGCAGAGTCATCCCAGATCTTGGCTCGTTACGTCAGACGTACATCGGGCATTGATGAAAACCAAGCTCGCCGGTTAATGCGTCAGTTGATCCAAGCCGTCAAGTTCTGCGCTGAGCGTGGAGTTTTCCATGGTGATATCCACGCGGGGAACATCCTGGTGATTCAACCCCGATTAGAGCTCAAACTGATTGACTTTGGTTGTGCTCGACCAATTACCAGCGAACCTTTCAAAAGCCGTGATTATGGAGGAGCCATAGTTTACACACCACCTGAGATCTTGAGGGATCCCACATTCTTTCCTAACCCGGCATACGTCTGGACAATAGGCCTCATCTTGTATGAAATATTGCACAGACGATTGGCCTTTACCAACACACGTTCGATAATCATTGGAAAACTTAAGACAGACCTCACCTTATCTTCAGCATGCCTGGAGCtgatttcccagtgtttggtCCGCCATCCAGAGAAGCGGCTACAGTTACATCAGGTTGAAGAGCACCAGTGGTTC

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000070890

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035498 False 2567 lncRNA 0.45 10 18936455 18942965
TCONS_00036817 True 792 lncRNA 0.47 5 18937889 18939754

Neighbor

gene id symbol gene type direction distance location
XLOC_018011 xkr6b coding downstream 21079 18801525 ~ 18915376 (-)
XLOC_018010 ccm2 coding downstream 141666 18774129 ~ 18794789 (-)
XLOC_018009 enpp5 coding downstream 200174 18721311 ~ 18736281 (-)
XLOC_018008 NA coding downstream 367036 18565758 ~ 18569419 (-)
XLOC_018007 NA coding downstream 385673 18548290 ~ 18550782 (-)
XLOC_018013 BX510941.2 coding upstream 32025 18974990 ~ 19011956 (-)
XLOC_018014 NA coding upstream 226967 19169932 ~ 19174123 (-)
XLOC_018015 si:dkey-71h2.2 coding upstream 333967 19276932 ~ 19366022 (-)
XLOC_018016 si:ch211-278j3.3 coding upstream 430463 19373428 ~ 19422496 (-)
XLOC_018017 BX842692.1 coding upstream 439462 19382427 ~ 19385077 (-)
XLOC_017928 CU539064.1 misc downstream 8882754 10053405 ~ 10053701 (-)
XLOC_018005 NA non-coding downstream 547836 18387859 ~ 18388619 (-)
XLOC_018001 NA non-coding downstream 741137 18190516 ~ 18195318 (-)
XLOC_018000 NA non-coding downstream 917149 18016462 ~ 18019306 (-)
XLOC_018020 NA non-coding upstream 600178 19543143 ~ 19546588 (-)
XLOC_018021 dre-mir-206-1 non-coding upstream 601683 19544648 ~ 19544746 (-)
XLOC_018023 NA non-coding upstream 792809 19735774 ~ 19789010 (-)

Expression


Co-expression Network