XLOC_018015 (si:dkey-71h2.2)


Basic Information

Item Value
gene id XLOC_018015
gene name si:dkey-71h2.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 19276932 ~ 19366022 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035501
GAAGGGTTAATATTAGGTTTACTGTACGTATCCGGGACTGTGTCTATAGGCTGCGCCTCTCTCTCAGTCAATGAAGGGTTAATGTTACTGTACAGATCCAGGACTGTCTATAGGCTGCTCGTGTCCACTCGCTCGGTTACTCGCCGCATGCTACTCTACTTTCCTCATTCCCTCAGCGGGCACCAGAGAAGAGCGCGGCACCTGCTCTGCGGTCTCTTTCCAGCATGGATGCGCTGAAATCCGCCGGGAGAGCAATAATAAAAAGTCCAGGAGTTCCGCGGCACACATGGGGAACGTCCAAGCATGAAAagCTGCCAGAGAACTGGACAGACACCAAAGAGACGCTCCTGGAAGGGATGGTGTTCAATGTGAAGTATCTGGGCATGACTCTGGTTGGTCAACCTAAAGGAGAAGAAATGGCAGCGGCTGCCATCAGGAGGATTGTAACTACGGCTCGGGCCAGTGCAAAGAAGTTTCGGAAAGTGACCCTCACTGTTTCCCCCAAAGGAATCATCATCGCAGACACAGAGACTAATGACCTCGTTGAGGACGTGTCCATTTACAGAATATCTTACTGCACAACAGATAAAACTCAGGATAAGGTCTTCGCCTACGTCTCCCAAAGCCAGTTCAATGAAACTCTGGAGTGCCATGCCTTCCTgtgccaaaaaaagaaaataGCTCAAGCTGTGACTCTGACAGTTGCACAAGCATTTAAAATAGCTCTGGATCTGTGGGAGATCGCACAGGAAGACAAAGGCAAGAAAGGTCGCACATGCTTCTCCTTTTCAGATCCTGAATCTCAGCCTGAATCAGAGCCAAAGAGTGTCACAGAAGAGGAGAAGGCTCAGGCTCTGATGGAGCACAAACCGAGGAAGCCCTTCTTCCCCTCCTTCCTTTCTCCATCTCCACGCAGTAGCAACAGGAGACGGCCAATCAAACATGACTCCTGGGATGCAGAAGATGGCCTCGATGATGCCTTCTCAAGCAGTATGGAGGTGGAGGAGATGGACGCAGGTAAGTGAGATTGGCCACGTCCCGCAGCAGAACCCTGTCTGAAGATGCAGCTGTGAGTCCAGCAGAAGATCTCCTGTCCTTCAGCAGTGACGACTCAGActgaacacacacgcacgcgcacacacacatacactttcacCAGCCTGTCAGAAAGAGtcctgaacacacaacacatactGTAATGTGCAGCTAATGCCTCAGTGATGGACTCATTCACAGCACTGCCACTGAAAACAGCAAACAGCACCACAAAACAGCAGCACAGATGAGCATGATTCAGAAACACAGTAAAACTCTGGATCTTACATTATAATACTGTAAATTCAGGGTAGTTACATGATGAAACAACATGTATGAAACTGCATGTTCTATAAATTATACTCAAGCATTTGTGTAATTGAATATAATGTAAAAAGTGTAAATCTTTTCAACACATTGGTGCTATATTGTAGATACTTGGGTTATTAAAATACGTACTTGAAAAGAAGACCAAATGTTCACAGAAATGCACACAAAACATTCAGCACAGCATTCTTCAAGACTCCCACAGCCATTATTTTAATGCCAGATCACTTTGGTCCTCTCAGTCGAACGCTTTACACTAAGCAAAGCCACGGCAAAGCTCTCTGGTGAGTGTTTAAACATCAGAGGATGAACTGTAAGTGTTAAAGACCTTAATATGAGCATTTACAGACTCTACTGTTGTCCAGGACTTCAATTTGGAACCCTATTTTTAGATACGTGTCAGGATTTTTAGAGCACACTTAACCCTGGGTTATCATCACTTTAAACCCCGCGTTTAAACTTCACTAAGCATTCACATTTGTGTGTGAATTGTctgtttccaaacttttttacAAATAAGTATTCACCGAAAATATTTATTCCTGAATGAACCTTGATTTGCCTGTTTGTTGGAGTGCAAATTGGCAGGACTATAGCTGTGTCCAAAATCACCCCTATAGCCTTAAACTAAAGTTAAATTCACAtgtttttactgtacatcatgACATAAATCTAAGTAAGTTTAgtttgaaataaacaaatatacactGACTCTTTGTTTTTAAAGAGAAAGATAGTGAAACATTGAAAACAGTGTTAAACAATGTTTAAGATGGAGCGATAGTgtataaagtgatttttttttccatgtttataGGCTGAAAATTAAATTCAATCAGCAGTACGTTAACAGTCAAGTCAAAGACTCACATAACAAATAcgcaataataaaaacattaacccAGGTTTTAAGATTGTAGTGTGAAGCCTCAGTGTATGAATACACAGTATTAATTATAGACTGGAGCTCTGCACAAGACCTTTGgtcataggagaaatggtcatgcccaactgag
>TCONS_00035502
CCATTCACTAAATAACCCGAATGAATAATGAGACTCTAATTTCTTCATTCATTGATAGTCATGAAGTGAATCTGTCATTGAAGGGTTAATGTTATTTATACAGATCCAGGACGGCGTGAGTGTCTACTCTCGTGTCTCTCAGTCAGCGAAGGGTTAATATTAGGTTTACTGTACGTATCCGGGACTGTGTCTATAGGCTGCGCCTCTCTCTCAGTCAATGAAGGGTTAATGTTACTGTACAGATCCAGGACTGTCTATAGGCTGCTCGTGTCCACTCGCTCGGTTACTCGCCGCATGCTACTCTACTTTCCTCATTCCCTCAGCGGGCACCAGAGAAGAGCGCGGCACCTGCTCTGCGGTCTCTTTCCAGCATGGATGCGCTGAAATCCGCCGGGAGAGCAATAATAAAAAGTCCAGGAGTTCCGCGGCACACATGGGGAACGTCCAAGCATGAAAagCTGCCAGAGAACTGGACAGACACCAAAGAGACGCTCCTGGAAGGGATGGTGTTCAATGTGAAGTATCTGGGCATGACTCTGGTTGGTCAACCTAAAGGAGAAGAAATGGCAGCGGCTGCCATCAGGAGGATTGTAACTACGGCTCGGGCCAGTGCAAAGAAGTTTCGGAAAGTGACCCTCACTGTTTCCCCCAAAGGAATCATCATCGCAGACACAGAGACTAATGACCTCGTTGAGGACGTGTCCATTTACAGAATATCTTACTGCACAACAGATAAAACTCAGGATAAGGTCTTCGCCTACGTCTCCCAAAGCCAGTTCAATGAAACTCTGGAGTGCCATGCCTTCCTgtgccaaaaaaagaaaataGCTCAAGCTGTGACTCTGACAGTTGCACAAGCATTTAAAATAGCTCTGGATCTGTGGGAGATCGCACAGGAAGACAAAGGCAAGAAAGGTCGCACATGCTTCTCCTTTTCAGATCCTGAATCTCAGCCTGAATCAGAGCCAAAGAGTGTCACAGAAGAGGAGAAGGCTCAGGCTCTGATGGAGCACAAACCGAGGAAGCCCTTCTTCCCCTCCTTCCTTTCTCCATCTCCACGCAGTAGCAACAGGAGACGGCCAATCAAACATGACTCCTGGGATGCAGAAGATGGCCTCGATGATGCCTTCTCAAGATTGGCCACGTCCCGCAGCAGAACCCTGTCTGAAGATGCAGCTGTGAGTCCAGCAGAAGATCTCCTGTCCTTCAGCAGTGACGACTCAGActga
>TCONS_00035503
CCATTCACTAAATAACCCGAATGAATAATGAGACTCTAATTTCTTCATTCATTGATAGTCATGAAGTGAATCTGTCATTGAAGGGTTAATGTTATTTATACAGATCCAGGACGGCGTGAGTGTCTACTCTCGTGTCTCTCAGTCAGCGAAGGGTTAATATTAGGTTTACTGTACGTATCCGGGACTGTGTCTATAGGCTGCGCCTCTCTCTCAGTCAATGAAGGGTTAATGTTACTGTACAGATCCAGGACTGTCTATAGGCTGCTCGTGTCCACTCGCTCGGTTACTCGCCGCATGCTACTCTACTTTCCTCATTCCCTCAGCGGGCACCAGAGAAGAGCGCGGCACCTGCTCTGCGGTCTCTTTCCAGCATGGATGCGCTGAAATCCGCCGGGAGAGCAATAATAAAAAGTCCAGGAGTTCCGCGGCACACATGGGGAACGTCCAAGCATGAAAagCTGCCAGAGAACTGGACAGACACCAAAGAGACGCTCCTGGAAGGGATGGTGTTCAATGTGAAGTATCTGGGCATGACTCTGGTTGGTCAACCTAAAGGAGAAGAAATGGCAGCGGCTGCCATCAGGAGGATTGTAACTACGGCTCGGGCCAGTGCAAAGAAGTTTCGGAAAGTGACCCTCACTGTTTCCCCCAAAGGAATCATCATCGCAGACACAGAGACTAATGACCTCGTTGAGGACGTGTCCATTTACAGAATATCTTACTGCACAACAGATAAAACTCAGGATAAGGTCTTCGCCTACGTCTCCCAAAGCCAGTTCAATGAAACTCTGGAGTGCCATGCCTTCCTgtgccaaaaaaagaaaataGCTCAAGCTGTGACTCTGACAGTTGCACAAGCATTTAAAATAGCTCTGGATCTGTGGGAGATCGCACAGGAAGACAAAGGCAAGAAAGGTCGCACATGCTTCTCCTTTTCAGATCCTGAATCTCAGCCTGAATCAGAGCCAAAGAGTGTCACAGAAGAGGAGAAGGCTCAGGCTCTGATGGAGCACAAACCGAGGAAGCCCTTCTTCCCCTCCTTCCTTTCTCCATCTCCACGCAGTAGCAACAGGAGACGGCCAATCAAACATGACTCCTGGGATGCAGAAGATGGCCTCGATGATGCCTTCTCAAGCAGTATGGAGGTGGAGGAGATGGACGCAGGTAAGTGAG

Function

symbol description
si:dkey-71h2.2 Predicted to be active in early endosome.

GO:

id name namespace
GO:0005769 early endosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-145 Predicted to be active in early endosome.

Ensembl:

ensembl_id ENSDARG00000043394

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035501 False 2378 mRNA 0.43 10 19276932 19365875
TCONS_00035502 False 1229 mRNA 0.49 9 19278190 19366022
TCONS_00035503 True 1173 mRNA 0.49 9 19281046 19366022

Neighbor

gene id symbol gene type direction distance location
XLOC_018014 NA coding downstream 102809 19169932 ~ 19174123 (-)
XLOC_018013 BX510941.2 coding downstream 264976 18974990 ~ 19011956 (-)
XLOC_018012 BX510941.1 coding downstream 333967 18936455 ~ 18942965 (-)
XLOC_018011 xkr6b coding downstream 361556 18801525 ~ 18915376 (-)
XLOC_018010 ccm2 coding downstream 482143 18774129 ~ 18794789 (-)
XLOC_018016 si:ch211-278j3.3 coding upstream 7406 19373428 ~ 19422496 (-)
XLOC_018017 BX842692.1 coding upstream 16405 19382427 ~ 19385077 (-)
XLOC_018018 snx17 coding upstream 70165 19436187 ~ 19511700 (-)
XLOC_018019 BX276101.2 coding upstream 128251 19494273 ~ 19532657 (-)
XLOC_018020 NA coding upstream 177121 19543143 ~ 19546588 (-)
XLOC_017928 CU539064.1 misc downstream 9223231 10053405 ~ 10053701 (-)
XLOC_018008 NA non-coding downstream 707513 18565758 ~ 18569419 (-)
XLOC_018007 NA non-coding downstream 726150 18548290 ~ 18550782 (-)
XLOC_018005 NA non-coding downstream 888313 18387859 ~ 18388619 (-)
XLOC_018021 dre-mir-206-1 non-coding upstream 178626 19544648 ~ 19544746 (-)
XLOC_018023 NA non-coding upstream 369752 19735774 ~ 19789010 (-)
XLOC_018024 BX510657.2 non-coding upstream 407338 19773360 ~ 19773475 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_00194573_00205676 NA coding CI01000051 null 193827 ~ 205735 (+)