Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_018021 (dre-mir-206-1)

Basic Information

Item	Value
gene id	XLOC_018021
gene name	dre-mir-206-1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007131.7
NCBI id	CM002904.2
chromosome length	55201332
location	19544648 ~ 19544746 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035516
GAATGTTGCCTCTTGTGAAGACATGCTTCCTTATATGCCCATATTAATGCTCAAGTTATGGAATGTAAGGAAGTGTGTGGTTTCAGGGGGAAATTTGTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000082396

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00035516	True	99	miRNA	0.40	1	19544648	19544746

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_018019	BX276101.2	coding	downstream	11991	19494273 ~ 19532657 (-)
XLOC_018018	snx17	coding	downstream	32948	19436187 ~ 19511700 (-)
XLOC_018016	si:ch211-278j3.3	coding	downstream	122152	19373428 ~ 19422496 (-)
XLOC_018017	BX842692.1	coding	downstream	159571	19382427 ~ 19385077 (-)
XLOC_018015	si:dkey-71h2.2	coding	downstream	178626	19276932 ~ 19366022 (-)
XLOC_018022	baalcb	coding	upstream	35089	19579835 ~ 19590378 (-)
XLOC_018023	NA	coding	upstream	191028	19735774 ~ 19789010 (-)
XLOC_018024	BX510657.2	coding	upstream	228614	19773360 ~ 19773475 (-)
XLOC_018025	ptk2bb	coding	upstream	282633	19827379 ~ 19864131 (-)
XLOC_018026	kcnh5a	coding	upstream	420108	19964854 ~ 20182871 (-)
XLOC_017928	CU539064.1	misc	downstream	9490947	10053405 ~ 10053701 (-)
XLOC_018014	NA	non-coding	downstream	370525	19169932 ~ 19174123 (-)
XLOC_018012	BX510941.1	non-coding	downstream	601683	18936455 ~ 18942965 (-)
XLOC_018008	NA	non-coding	downstream	975229	18565758 ~ 18569419 (-)
XLOC_018007	NA	non-coding	downstream	993866	18548290 ~ 18550782 (-)
XLOC_018032	BX649231.1	non-coding	upstream	883582	20428328 ~ 20582501 (-)
XLOC_018035	NA	non-coding	upstream	1067146	20611892 ~ 20613628 (-)
XLOC_018036	NA	non-coding	upstream	1136570	20681316 ~ 20690788 (-)

Expression

Co-expression Network