XLOC_018026 (kcnh5a)


Basic Information

Item Value
gene id XLOC_018026
gene name kcnh5a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 19964854 ~ 20182871 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035522
CCACCGCCTGCATCACTTTAACGACCAGCTTCCACCAACTCCGCGAGCCTGACCGACGCTGCCCGGCCGCAGAATGCACGGGGGAAAAAGAGGACTGGTGGCACCACAGAACACTTTTTTGGAGAATGTTGTCCGTCGCTCAAGTGAGAACAGTTTTTTGCTGGGGAATGCGCAGATCGTGGAGTGGCCTATAGTTTACAGTAATGACGGATTCTGCAAGCTCTCTGGTTACCACAGGGCAGAGGTCATGCAGAAGAGCAGCACATGCAGTTTCATGTACGGCGAGCTGACAGACAAGAAGACAATAGACAAAGTCAGACAGACCTTTGATAACTATGAGTCCAATTGCTTTGAAGTGCTGCTCTATAAGAAGAACAGAACACCTGTATGGCTCCATATGCAGGTGGCCCCCATCAGGAACGAGAATGATAAGGTGGTCCTGTTCCTCTGCACTTTCAAGGATATCACTGTCTTCAAGCAGCCCATAGAAGATGAGACCACCAGAGGATGGACCAAGTTTGCCAGGCTGACCAGGGCATTAACCAACAGCCGAGGTACGGTTCAGCAGCTCACCCCCATGAACAAGACTGAAGTCAGTCACAAGCATTCACGACTGGCAGAGGCTCTTCAACTGGGCTCCGACATTCTCCCTCAATATAAGCAAGAGGCTCCTAAAACTCCACCTCATATTATATTgcactactgcacctttaagaccaCTTGGGACTGGGTTATTCTCATCCTCACCTTCTACACAGCCATCATGGTGCCCTACAATGTGTcttttaagaccaagcagaacaACCTGGTGTGGTTGGTACTGGACAGCGTGGTGGATGTCATCTTCCTAGTGGATATTGTGTTGAACTTTCATACAACTTTTGTGGGACCTGGAGGAGAGGTCATATCTGACCCAAAGCTTATACGCATGAACTACTTGAAGACCTGGTTTGTCATAGACCTGCTGTCCTGTCTACCCTATGACATCATCAATGCCTTTGAAAACGTGGATGAGGACACCTTTGTAGACTCCTCTGCTGTGGGTCACTTGCCATCTGCAGGCCATTCTCCACGAAACGCCACACGTGCGGAGGATTCAGTGCTGCCCGGTCTCAGCAGTCTGTTCAGCTCATTGAAAGTGGTGCGTTTACTCCGCCTGGGTCGAGTTGCTCGCAAACTGGACCACTATCTGGAATATGGTGCTGCTGTGTTGGTTTTGCTGGTGTGTGTCTTTGGCCTGGTGGCACATTGGCTGGCCTGCATCTGGTACAGCATTGGAGATTACGAGGTCATCGATGAAGCCACCAATAGcctcaagacggacagctggctTTATCAGTTAGCCATTAGCATTGGGACGCCGTACCGCTATAACGCCAGCGGCTCAGGCCATTGGGAAGGTGGACCAAGCAAACACACGCTCTACATTTCATCTCTCTATTTCACCATGACCAGTCTCACCACTATTGGCTTTGGCAACATTGCACCAACCACTGACGGGGAGAAGATCTTCTCTGTGGCCATGATGATGGTGGGCTCTCTTCTGTACGCAACCATCTTTGGAAACGTGACCACCATCTTTCAGCAGATGTACACCAACACCAACCGCTACCATGAGATGCTGAACAACGTGAGAGACTTTCTGAAGCTCTATCAGGTGCCTAAAGGGCTGAGCGAGAGGGTTATGGACTACATCGTGTCCACGTGGGCCATGACTAAAGGCATAGACACAGAGAAGGTTCTGTCCATTTGTCCTAAAGACATGCGGGCAGACATCTGCGTGCACCTGAACCGGCAGGTGTTCAATGAGCACCCTGCTTTCCGGCTGGCCAGTGACGGCTGCCTGCGCTCTTTGGCGGTGGAGTTTCAGACCACACACTGCGCTCCAGGAGATCTCATCTTCCATGCCGGTGAGAGTGTGGACACCCTGTGCTTCGTCGTGTCTGGATCGCTGGAGGTCATTCAGGATGATGAAGTTATTGCCATTCTAGGTAAGGGCGATGTGTTTGGTGACGTGTTCTGGAAGGAGTCGTCTCTGGCTCATGCCTGTGCAAACGTGAGGGCCCTGACATACTGCGACCTGCACGTCATCAGGAGAGACGCATTACTCAAAGTGCTGGAGTTTTACACGGCCTTCGCTAACTCCTTTTCCAGAAACCTCATCCTCACCTGCAACCTCCGCAAGCGGATTGTTTTCCGCAAGATTGCAGATGTAAAGAAGGAGGAAGAAGAGAGGAGACACCAAAAGAATGAGGTGACATTGTCTATCCCTGTGGACCATCCTGTCCGCAAGCTCTTCCAAAAATTCAAACAGCAAAAGGAGATGCGCACACAAGGTCCATCCCAGTATGACCTGGAGAGGAACCAGTTTCAGGTAGAACACCACCTCCATCCGCTGTCCCACCAGCTTCATCAGCAGCAATATCAGCCCCAGTACCAGGGACATCATTCCCTTCAACACCAACACGTGGCCCCTATGCAAAATGGGGCCCCTGGCTCGGGAAATGGTAATGGTGGTTCTTGTGTCGTGACTGTCTCACAAATAACCCCAATACAGAGTGCCCTAGCCTACGCTCAGACTGAGGAAACGAACATGAGTGAAGGTCATGAGGCTATGGAGCTCAAGCCCAACTTTGGTGCAGAGGACTCGAATTGTCTAAAGGTAACAAGTCCTGTGAAACCCAGAGCAGGAAAGGGACGAGGCTGGATGCGTTTCCATAACATTGCATCCGGATCATCTCCAATGCTTCCACTGGAATTAGAGAAACAGCCACAGCAGAAGGAAGAGGAGTGGGGGGATGTATCTCAGCCCCTGAATGCAATCTCAGAGGACAGGAAGGGCCAGGAAGCAGAGGGTGGTGGGTCCCAGAAAGAGGGTCCCAGTGGAAACAGTAACAGTAGCGAGGAGACTGATGAGAATAGTGCCCTACACAAGACTGATTCTTGTGACAGTGGAATCACAAAGAGTGACTTGCGTATTGACCGAGTAGGGGATTCGCGTAGCCCTTATGATAGGTGCTCAATGGAAAGGAGCCCTTTTGATCAGCCTAGTCCAGGAGTGGTAGACGTGACTCTTCGGGGGATTCACTTTCAGCCTGTTCCAGACCAGGCTGTGCTTCAGAACAGCTTGTACGAGGCAAAGCAGGAACTGAAAGGTGACATCCAGACATTAAACAGCCGACTAGCGGCTCTGGAGGACCAGGTAGGGGAGATTTTAAGACTTCTCTCCGAAAAAAGGAAACCTTCTCCACCTTCCCAGACCTCCTCGCCAAAAACCACACTTGAGTGCCAGGACATATTTGCTGTTTCTCAGCCCGTCACTCCAGAGACGGAGGGCGATGATGGGCCGCTTTGAATTAGGagaaatatatttagatattgatatgctgtttttatttatcaCTTGCCCTTCCTCTCACTCAGG
>TCONS_00035523
ATATTATATTgcactactgcacctttaagaccaCTTGGGACTGGGTTATTCTCATCCTCACCTTCTACACAGCCATCATGGTGCCCTACAATGTGTcttttaagaccaagcagaacaACCTGGTGTGGTTGGTACTGGACAGCGTGGTGGATGTCATCTTCCTAGTGGATATTGTGTTGAACTTTCATACAACTTTTGTGGGACCTGGAGGAGAGGTCATATCTGACCCAAAGCTTATACGCATGAACTACTTGAAGACCTGGTTTGTCATAGACCTGCTGTCCTGTCTACCCTATGACATCATCAATGCCTTTGAAAACGTGGATGAGGGTCTCAGCAGTCTGTTCAGCTCATTGAAAGTGGTGCGTTTACTCCGCCTGGGTCGAGTTGCTCGCAAACTGGACCACTATCTGGAATATGGTGCTGCTGTGTTGGTTTTGCTGGTGTGTGTCTTTGGCCTGGTGGCACATTGGCTGGCCTGCATCTGGTACAGCATTGGAGATTACGAGGTCATCGATGAAGCCACCAATAGcctcaagacggacagctggctTTATCAGTTAGCCATTAGCATTGGGACGCCGTACCGCTATAACGCCAGCGGCTCAGGCCATTGGGAAGGTGGACCAAGCAAACACACGCTCTACATTTCATCTCTCTATTTCACCATGACCAGTCTCACCACTATTGGCTTTGGCAACATTGCACCAACCACTGACGGGGAGAAGATCTTCTCTGTGGCCATGATGATGGTGGGCTGTGAGTATTATTGGTTTACTTTCTTTTA

Function

symbol description
kcnh5a Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of membrane potential. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human KCNH5 (potassium voltage-gated channel subfamily H member 5).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061106-2 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of membrane potential. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human KCNH5 (potassium voltage-gated channel subfamily H member 5).

Ensembl:

ensembl_id ENSDARG00000043220

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035522 False 3424 mRNA 0.51 12 19964854 20182871
TCONS_00035523 True 787 mRNA 0.48 2 20093223 20111934

Neighbor

gene id symbol gene type direction distance location
XLOC_018025 ptk2bb coding downstream 100723 19827379 ~ 19864131 (-)
XLOC_018023 NA coding downstream 175844 19735774 ~ 19789010 (-)
XLOC_018024 BX510657.2 coding downstream 191379 19773360 ~ 19773475 (-)
XLOC_018022 baalcb coding downstream 374476 19579835 ~ 19590378 (-)
XLOC_018020 NA coding downstream 418266 19543143 ~ 19546588 (-)
XLOC_018027 ppp2r5ea coding upstream 46715 20229586 ~ 20270191 (-)
XLOC_018028 si:ch211-212g7.6 coding upstream 92130 20275001 ~ 20312789 (-)
XLOC_018029 snapc1a coding upstream 131703 20314574 ~ 20324792 (-)
XLOC_018030 hif1ab coding upstream 143740 20326611 ~ 20355577 (-)
XLOC_018031 prkchb coding upstream 177466 20360337 ~ 20410127 (-)
XLOC_017928 CU539064.1 misc downstream 9911153 10053405 ~ 10053701 (-)
XLOC_018021 dre-mir-206-1 non-coding downstream 420108 19544648 ~ 19544746 (-)
XLOC_018017 BX842692.1 non-coding downstream 579777 19382427 ~ 19385077 (-)
XLOC_018032 BX649231.1 non-coding upstream 245457 20428328 ~ 20582501 (-)
XLOC_018035 NA non-coding upstream 429021 20611892 ~ 20613628 (-)
XLOC_018036 NA non-coding upstream 498445 20681316 ~ 20690788 (-)
XLOC_018040 BX004766.1 non-coding upstream 1149143 21332014 ~ 21332128 (-)
XLOC_018043 BX296520.1 non-coding upstream 1816285 21999156 ~ 22015295 (-)

Expression


Co-expression Network