XLOC_018032 (BX649231.1)


Basic Information

Item Value
gene id XLOC_018032
gene name BX649231.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 20428328 ~ 20582501 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035537
TTTCCGTCAAAAACATATTTGGTATTTAATCACCACGTGGggtaattttaaaatacattttaataagctACATATTTAGCCAATTAGCTTAACGGGCAAAAACCCTATGCAGATTTAGGATCGGCTAAATTCTGTTTGTCACTTCCGTAAATATTTATTAGCCGTGCGTTTGTGTTTAATGTGTTTGCAGTTCATTTTATTGTTGTGCTTACCAAAATGTGTGTGAACGTTAGTTAAACACCCCGAAACACATCTGACAAGtgtataatgttgtttttgtggcCACAGTGCTAACTTTATCAGACTGTAACGCCAGAAGTTTCTAAttcataacaacattgagtcagCTATTCAGTTCAATGTATTGTCACTTCTAGTTTTAAAAGAAGAGGCTCAGAGATCTTCTTGGAGGCCTTGGAGTAAATGAAGTGCGTGACCCATCATGTACCCGCTGAGGCAGGAGACAAAGGGAAGAGACGGCACTGGCAAGCCACTGATGGAGtttgtcaTGCTGTTTACTGGAAGCTGAAGGTTTGTATGGGAGCCAACAACCGCAACAGCTGACAGGAGGCCCCAGAAGCCTCTCACAAAAGCAAAGGGGAGCTTGACGTGATTGCATCCCTAAAATTAAACCCAGCACAAACAGAATACCTGGCAGAAGCTCTGTGCACATCCCTCCATTCACATGCTCTCTGGAATGATGGCGGCATGTAGGACGCCACAACCAGGCTGTCCTGtggaattattgcacaataa
>TCONS_00036823
CTTCGATAGAGGCGCCATGTTTTCAACGTTGAGCCTAAACATCACGACGTTCACGTTTTCTCCTGGGTCACTCAAAACCGACCATAAACTGACAGGCTGCTCCACCGTTTTAAAAGAAGAGGCTCAGAGATCTTCTTGGAGGCCTTGGAGTAAATGAAGTGCGTGACCCATCATGTACCCGCTGAGGCAGGAGACAAAGGGAAGAGACGGCACTGGCAAGCCACTGATGGAGAGGCTGTTTCAGAAACTCCCATTGAGAATGGAGCATAAG

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0012505 endomembrane system cellular_component
GO:0031984 organelle subcompartment cellular_component
GO:0000030 mannosyltransferase activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035537 False 756 lncRNA 0.42 4 20428328 20582383
TCONS_00036823 True 271 lncRNA 0.50 4 20487816 20582501

Neighbor

gene id symbol gene type direction distance location
XLOC_018031 prkchb coding downstream 18201 20360337 ~ 20410127 (-)
XLOC_018030 hif1ab coding downstream 72751 20326611 ~ 20355577 (-)
XLOC_018029 snapc1a coding downstream 103536 20314574 ~ 20324792 (-)
XLOC_018028 si:ch211-212g7.6 coding downstream 115539 20275001 ~ 20312789 (-)
XLOC_018027 ppp2r5ea coding downstream 158137 20229586 ~ 20270191 (-)
XLOC_018034 ppm1ab coding upstream 18470 20600971 ~ 20611063 (-)
XLOC_018035 NA coding upstream 29391 20611892 ~ 20613628 (-)
XLOC_018036 NA coding upstream 98815 20681316 ~ 20690788 (-)
XLOC_018037 ckbb coding upstream 234246 20816747 ~ 20821789 (-)
XLOC_018038 xrcc3 coding upstream 314121 20896622 ~ 20901558 (-)
XLOC_017928 CU539064.1 misc downstream 10374627 10053405 ~ 10053701 (-)
XLOC_018023 NA non-coding downstream 639318 19735774 ~ 19789010 (-)
XLOC_018024 BX510657.2 non-coding downstream 654853 19773360 ~ 19773475 (-)
XLOC_018020 NA non-coding downstream 881740 19543143 ~ 19546588 (-)
XLOC_018021 dre-mir-206-1 non-coding downstream 883582 19544648 ~ 19544746 (-)
XLOC_018017 BX842692.1 non-coding downstream 1043251 19382427 ~ 19385077 (-)
XLOC_018040 BX004766.1 non-coding upstream 749513 21332014 ~ 21332128 (-)
XLOC_018043 BX296520.1 non-coding upstream 1416655 21999156 ~ 22015295 (-)
XLOC_018044 NA non-coding upstream 1461009 22043510 ~ 22070176 (-)

Expression


Co-expression Network