XLOC_018035


Basic Information

Item Value
gene id XLOC_018035
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 20611892 ~ 20613628 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035541
AGCTTCCGGTCTGGGTGACTTTAAGCGGAGGTGAACAGTATTATGACAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAGGGTTTCAAGTTGTATGCATCTTCCTACCTGTGCAATTATGAAGGTAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCATCCTGGAGCGGACATCCGTCAGAAGATCCATGACATCGTCTGCTAGTTTATAGCTCCTGCTCTTGTGTGGCTGAGAGTGGGATTTGCAAACATTTGGTTGCTTTGCTTTTCCAGACAGCCCATTactctgaaatgtgtaatgtgagttgtcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagagaggtgatttatttatttatttaatacgtaTAAGCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTGATTCAAGAAAACAACTGATTCAATGTCATTTTTTCTgttcatctgaataaaatatttttttcaaaatgtt
>TCONS_00036824
tatatgcacgcaTTACTTCCGCGTTTTGTCTAAGGCCGCGGTCCAGCTTCCGGTCTGGGTGACTTTAAGCGGAGGTGAACAGTATTATGACAGAGTCGTCAATATTTACTCGCTGTTTGCGAGTAAATTATGGTCAACGATGTGCAAATGATTGTCCGGATGTGCTCTACAACACCGCAGAGCAAAGCTTGAGAAGGGTTTCAAGTTGTATGCATCTTCCTACCTGTGCAATTATGAAGGTAAGTTCAGCTAGCCTGAAGGCTAACTTTAGCGTTAATACTCTTACGATCCGTCCATCTGCAGCTTTATCACgtaagtaaaaataatcatatgtGTACGTAATTCTGTCTCAAAGTGTCAGGCAAAAACAGGGCAGGAATAAGATCTCAGTGAGAGCTCATTACTACCGATAGATCTATGAAGAATTCGGAGTCTCCTCACCAGCTGAGAGGAGGACAGCATACATGTGAAATTCTGTCCCATTCATACTTTTACTGTTCTAAAGTGACCACCACTGTTCAGTTCGGATAATCACAGAAACACAGATGCTGTCTTAGCTTGTaagcatgattattgagcaagatagattaggaataaaataatacaatgccgTTCCATCCACAACAGACAAATAGCACTGTGTCAATGCTGATATTTATTGCTGAAACAGTGGAGATGACAGATGCAGTGTAGCAGTGTAGATAGCATGCTTTCTATTTAGTcgataacattgtaattaaatgggagggtgacccaaaacaataaggtgtcattagttaatttcacatcaacaatttgtctatttcaatatttattagttttttacattgCTTATTGCTTattcattgtgcttgttaactcacaatgtaatagctaatgttaacaagcatgactttggatttttattcattagtaaattagtttaacaatgttaaatattaaatagttattttaatagtgagcaaatacattaattaatgaaaccttattttaaagtgtgactaaagggagctacttttaaatcatttaaattaatgatttactgtgtagtttaatctgatgatattgctgcagatgcctttaaaaagaagatattttgaagaaagctgaaaacctgtaaccattgacttccatagtaggaaaaagagctactatgaatatcagtggttgcaagtttccagctttcttcaaagtatttttgtttgtgttaaacatcagaaagaaactcaaacaggtttggaacaagtgaaggatgaggaaatagaattttcagttttgagtgaactgcctttaatgactctctttaaaaacctattaatattcttgtttctgttttctagGTAACATTATGAGATTCAGAGCTAGAAAATTTTATGTGTTACTTCATCCTGGAGCGGACATCCGTCAGAAGATCCATGACATCGTCTGCTAGTTTATAGCTCCTGCTCTTGTGTGGCTGAGAGTGGGATTTGCAAACATTTGGTTGCTTTGCTTTTCCAGACAGCCCATTactctgaaatgtgtaatgtgagttgtcacatgaacaattgtttggaatggatcaattatgtgttaagttccatgaaacagagaggtgatttatttatttatttaatacgtaTAAGCCCAAATACCTCTCTATGCACAAGTTACAGAAGAAGCACCTGATTCAAGAAAACAACTGATTCAATGTCATTTTTTCTgttcatctgaataaaatatttttttcaaaatgtt

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007498 mesoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035541 False 592 lncRNA 0.38 2 20611892 20613584
TCONS_00036824 True 1737 lncRNA 0.35 1 20611892 20613628

Neighbor

gene id symbol gene type direction distance location
XLOC_018034 ppm1ab coding downstream 829 20600971 ~ 20611063 (-)
XLOC_018032 BX649231.1 coding downstream 29391 20428328 ~ 20582501 (-)
XLOC_018033 six6b coding downstream 78027 20531002 ~ 20533865 (-)
XLOC_018031 prkchb coding downstream 201765 20360337 ~ 20410127 (-)
XLOC_018030 hif1ab coding downstream 256315 20326611 ~ 20355577 (-)
XLOC_018036 NA coding upstream 67688 20681316 ~ 20690788 (-)
XLOC_018037 ckbb coding upstream 203119 20816747 ~ 20821789 (-)
XLOC_018038 xrcc3 coding upstream 282994 20896622 ~ 20901558 (-)
XLOC_018039 btbd6b coding upstream 314199 20927827 ~ 20932782 (-)
XLOC_018040 BX004766.1 coding upstream 718386 21332014 ~ 21332128 (-)
XLOC_017928 CU539064.1 misc downstream 10558191 10053405 ~ 10053701 (-)
XLOC_018023 NA non-coding downstream 822882 19735774 ~ 19789010 (-)
XLOC_018024 BX510657.2 non-coding downstream 838417 19773360 ~ 19773475 (-)
XLOC_018020 NA non-coding downstream 1065304 19543143 ~ 19546588 (-)
XLOC_018043 BX296520.1 non-coding upstream 1385528 21999156 ~ 22015295 (-)
XLOC_018044 NA non-coding upstream 1429882 22043510 ~ 22070176 (-)
XLOC_018048 NA non-coding upstream 1775488 22389116 ~ 22432496 (-)
XLOC_018021 dre-mir-206-1 non-coding downstream 1067146 19544648 ~ 19544746 (-)

Expression


Co-expression Network