XLOC_018039 (btbd6b)


Basic Information

Item Value
gene id XLOC_018039
gene name btbd6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 20927827 ~ 20932782 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035552
ctctctcataGCACACACTGTAGATTTAACATGGCTCCTGGTTGCCAGCGAGCCTCCAAACATCAAACCTGAATGTATTTTTCCTGGCAGCTGCGCTTCGCTCGGCTCAATAAGAAACCTTAAAAAGGACTAGAAAGAGTGGGAAACAGCTCAGCAAGCTGCCAGTATGCTATGAAATCGTGACTTTGTCCTTGAGGAAGAAGATGGCTGCAGAACTCTATCCTGCCAGCATAAATACCAACCTTCCAAACAGTAACAGCACAGCAGTCACAGCTGCCAGCAAAAAGACCATCGTCCAAGTCACTCAAACGGTGACCACACCGACTACAACTGCCACTCAGCagaacatcaacaataataacgTCGAGACTGCCAGCTGGCAGTCCACTCACCCGACATTGCGAGAAAGGAATGCTTTGATGTTCAATAACGAACTCATGGCAGATGTTCATTTTGTTGTGGGTCCTCCTGGCGCATCCCAAAAAGTTCCAGCACACAAGTATGTGCTGGCAGTGGGGAGTTCTGTTTTTGGTGCCATGTTTTATGGAGATCTAGCAGAAGGAGAATCTGAGATTCATATTCCTGATGTGGAACCTGCtgcttttttaattcttttgaaGTACATGTACAGCGATGAGATTGAACTTGAAGCGGACACAGTGCTGGCCACTCTGTACGCTGCCAAAAAATATATAGTGCCTGCGCTGGCTAAGGCCTGTGTCACCTTTCTGGAGACAAGCCTGGAGGCCAAAAATGCCTGTGTGTTGTTGTCCCAGAGTAGACTATTTGAGGAGCCTGAGCTGACCCTGCGGTGTTGGGAGGTCATTGATGCTCAGGCTGAACTGGCGCTTCACTCTGAGGGCTTCTGTGAGATTGATCTTCAAACGCTGGAGATCATACTAAAGAGAGAGACTCTGAATACCCGGGAGGCAGTGGTCTTTCAGGCAGCTCTTGATTGGGCTGTGGCTGAATGCAAAAGGCAAGGACTGGGACCGACCGCTCGTAATAAAAGGGCAGTGCTGGGCAAGGCTCTCTACTTGGTTCGCATCCCAACCATGACCCTGGAGGAGTTCGCCAATGGAGCTGCACAGTCAGATGTATTGACTCTGGAAGAGACTCATGATGTCTTCCTTTGGTACACTGCAGCCAATAAACCCAAGCTGGAATTCCCACTACAAAAAAGAAAAGGTTTGACGCCACAGCGATGCCATCGCTTCCAGTCTTCGGCCTACCGCAGTAACCAGTGGCGCTACCGTGGACGTTGCGATAGCATCCAGTTTGCAGTGGACAAGAGGATTTTCATCGCAGGACTTGGCTTGTATGGTTCAAGTGGTGGAAAGGCAGAGTACAGCGTCAAGATCGAACTCAAGCGCCAAGGAGTGACTCTGGCCCAGAACCTAACAAAATTTATCTCAGATGGATCCAGCAACACCTTCTCCGTATGGTTTGAACACCCCGTCCAAGTGGAGCAGGACACCTTCTACACAGTCAGTGCTGTATTGGATGGGAATGAACTTAGTTATTTTGGACAGGAGGGTATGACAGAAGTGCAGTGTGGAAAAGTGACCTTCCAGTTCCAGTGTTCCTCGGACAGTACCAATGGAACTGGAGTCCAGGGGGGTCAGATCCCAGAGCTGGTCTTCTATGCGTGAAATTGTCAGGATGTCCCATTGTAGTGCATTCCGCTCACTGGAATTAAGATGGATTGAATACAGGGTCTCGTGAGGCTCTTGCCTTCATTATGTAGCAGTTGTGAACTCAATGGTTATGGCTCCTCTGTACCACAATGGACTCAGATGGAAGGAATGTTCTTCAGctttatttattgcaaaaaaatatctatatttgattttaattattgACGCTGCTGCAAGCagatctatatataaatatatataaatgagatAGTTGTACTGCTCTGATAGTGGACGGAAGCCACTAGTGTGTCATGTTTTGTACATAACGTATTTGTTTTCAGCTTGATGCTGATTGACAAATAAAATGTCTTGTATTAGTGAACCGCTTCCCGAACTGCagattataaatgtttttgttcctCGA
>TCONS_00035553
GATTTAACATGGCTCCTGGTTGCCAGCGAGCCTCCAAACATCAAACCTGAATGTATTTTTCCTGGCAGCTGCGCTTCGCTCGGCTCAATAAGAAACCTTAAAAAGGACTAGAAAGAGTGGGAAACAGCTCAGCAAGCTGCCAGTATGCTATGAAATCGTGACTTTGTCCTTGAGGAAGAAGATGGCTGCAGAACTCTATCCTGCCAGCATAAATACCAACCTTCCAAACAGTAACAGCACAGCAGTCACAGCTGCCAGCAAAAAGACCATCGTCCAAGTCACTCAAACGGTGACCACACCGACTACAACTGCCACTCAGCagaacatcaacaataataacgTCGAGACTGCCAGCTGGCAATGGATCCAGCAACACCTTCTCCGTATGGTTTGAACACCCCGTCCAAGTGGAGCAGGACACCTTCTACACAGTCAGTGCTGTATTGGATGGGAATGAACTTAGTTATTTTGGACAGGAGGGTATGACAGAAGTGCAGTGTGGAAAAGTGACCTTCCAGTTCCAGTGTTCCTCGGACAGTACCAATGGAACTGGAGTCCAGGGGGGTCAGATCCCAGAGCTGGTCTTCTATGCGTGAAATTGTCAGGATGTCCCATTGTAGTGCATTCCGCTCACTGGAATTAAGATGGATTGAATACAGGGTCTCGTGA
>TCONS_00035554
CCGACTACAACTGCCACTCAGCagaacatcaacaataataacgTCGAGACTGCCAGCTGGCAGTCCACTCACCCGACATTGCGAGAAAGGTATGAGCACATTTAGCTAGCTTTTCAAATCACCTATGCTGTTTTTGTTTCATCAATGTGATATTCTGTTCCATTTGTTCTCGCCAGGAATGCTTTGATGTTCAATAACGAACTCATGGCAGATGTTCATTTTGTTGTGGGTCCTCCTGGCGCATCCCAAAAAGTTCCAGCACACAAGTATGTGCTGGCAGTGGGGAGTTCTGTTTTTGGTGCCATGTTTTATGGAGATCTAGCAGAAGGAGAATCTGAGATTCATATTCCTGATGTGGAACCTGCtgcttttttaattcttttgaaGTACATGTACAGCGATGAGATTGAACTTGAAGCGGACACAGTGCTGGCCACTCTGTACGCTGCCAAAAAATATATAGTGCCTGCGCTGGCTAAGGCCTGTGTCACCTTTCTGGAGACAAGCCTGGAGGCCAAAAATGCCTGTGTGTTGTTGTCCCAGAGTAGACTATTTGAGGAGCCTGAGCTGACCCTGCGGTGTTGGGAGGTCATTGATGCTCAGGCTGAACTGGCGCTTCACTCTGAGGGCTTCTGTGAGATTGATCTTCAAACGCTGGAGATCATACTAAAGAGAGAGACTCTGAATACCCGGGAGGCAGTGGTCTTTCAGGCAGCTCTTGATTGGGCTGTGGCTGAATGCAAAAGGCAAGGACTGGGACCGACCGCTCGTAATAAAAGGGCAGTGCTGGGCAAGGCTCTCTACTTGGTTCGCATC
>TCONS_00035555
GGGGATACACCACAGATTTGTAGGATGACAAGGACCACGTAGCACTTTCCATGGTGGATTCGGGgctattactttattatttatccGACTGCAGCAGTTCTATTGACTTGCATGCTATTACTTTCAATGTTCGCGAGGATGCGATGAGAAAGAAGAAGAAGTCATCGAGCTGGAATATTTCCGCTGGATGGATCCTTGCGTTTGTTCTGTAAATGTTTCCATAAGGAGGAAATGAAAAAGCTATGAAACCTTAAAAAGGACTAGAAAGAGTGGGAAACAGCTCAGCAAGCTGCCAGTATGCTATGAAATCGTGACTTTGTCCTTGAGGAAGAAGATGGCTGCAGAACTCTATCCTGCCAGCATAAATACCAACCTTCCAAACAGTAACAGCACAGCAGTCACAGCTGCCAGCAAAAAGACCATCGTCCAAGTCACTCAAACGGTGACCACACCGACTACAACTGCCACTCAGCagaacatcaacaataataacgTCGAGACTGCCAGCTGGCAGTCCACTCACCCGACATTGCGAGAAAGGAATGCTTTGATGTTCAATAACGAACTCATGGCAGATGTTCATTTTGTTGTGGGTCCTCCTGGCGCATCCCAAAAAGTTCCAGCACACAAGTATGTGCTGGCAGTGGGGAGTTCTGTTTTTGGTGCCATGTTTTATGGAGATCTAGCAGAAGGAGAATCTGAGATTCATATTCCTGATGTGGAACCTGCtgcttttttaattcttttgaaGTACATGTACAGCGATGAGATTGAACTTGAAGCGGACACAGTGCTGGCCACTCTGTACGCTGCCAAAAAATATATAGTG
>TCONS_00035556
AGGCTTGTagtttgtaattaaattaaagggAACCCTTCCCTCCGCTACACCTGCCTATTAATTACGCGCAGACTGGTGGATAGACTTGCTGATGCCAACAACGCCAGATTGCCTATATGGCAGGATCATGAAGTTTTTGACGTTTTTCCTTTTGCTTCCAGAAACCTTAAAAAGGACTAGAAAGAGTGGGAAACAGCTCAGCAAGCTGCCAGTATGCTATGAAATCGTGACTTTGTCCTTGAGGAAGAAGATGGCTGCAGAACTCTATCCTGCCAGCATAAATACCAACCTTCCAAACAGTAACAGCACAGCAGTCACAGCTGCCAGCAAAAAGACCATCGTCCAAGTCACTCAAACGGTGACCACACCGACTACAACTGCCACTCAGCagaacatcaacaataataacgTCGAGACTGCCAGCTGGCAGTCCACTCACCCGACATTGCGAGAAAGGAATGCTTTGATGTTCAATAACGAACTCATGGCAGATGTTCATTTTGTTGTGGGTCCTCCTGGCGCATCCCAAAAAGTTCCAGCACACAAGTATGTGCTGGCAGTGGGGAGTTCTGTTTTTGGTGCCATGTTTTATGGAGATCTAGCAGAAGGAGAATCTGAGATTCATATTCCTGATGTGGAACCTGCtgcttttttaattcttttgaa

Function

symbol description
btbd6b Predicted to be involved in neurogenesis. Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including myotome; nervous system; neural crest; neural tube; and otic vesicle. Orthologous to human BTBD6 (BTB domain containing 6).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007399 nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030829-65 Predicted to be involved in neurogenesis. Predicted to act upstream of or within cell differentiation and nervous system development. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Is expressed in several structures, including myotome; nervous system; neural crest; neural tube; and otic vesicle. Orthologous to human BTBD6 (BTB domain containing 6).

Ensembl:

ensembl_id ENSDARG00000032369

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035552 False 2061 mRNA 0.47 5 20927827 20932782
TCONS_00035553 False 669 mRNA 0.48 3 20928163 20932760
TCONS_00035554 False 816 lncRNA 0.48 3 20928839 20930559
TCONS_00035555 False 829 mRNA 0.45 5 20929190 20931197
TCONS_00035556 True 666 mRNA 0.45 3 20930082 20930926

Neighbor

gene id symbol gene type direction distance location
XLOC_018038 xrcc3 coding downstream 26269 20896622 ~ 20901558 (-)
XLOC_018037 ckbb coding downstream 106038 20816747 ~ 20821789 (-)
XLOC_018036 NA coding downstream 237039 20681316 ~ 20690788 (-)
XLOC_018035 NA coding downstream 314199 20611892 ~ 20613628 (-)
XLOC_018034 ppm1ab coding downstream 316764 20600971 ~ 20611063 (-)
XLOC_018040 BX004766.1 coding upstream 399232 21332014 ~ 21332128 (-)
XLOC_018041 si:ch211-207i1.2 coding upstream 705615 21638397 ~ 21806170 (-)
XLOC_018042 daam1b coding upstream 882831 21815613 ~ 21994901 (-)
XLOC_018043 BX296520.1 coding upstream 1066374 21999156 ~ 22015295 (-)
XLOC_018044 NA coding upstream 1110728 22043510 ~ 22070176 (-)
XLOC_017928 CU539064.1 misc downstream 10874126 10053405 ~ 10053701 (-)
XLOC_018032 BX649231.1 non-coding downstream 345326 20428328 ~ 20582501 (-)
XLOC_018023 NA non-coding downstream 1138817 19735774 ~ 19789010 (-)
XLOC_018048 NA non-coding upstream 1456334 22389116 ~ 22432496 (-)
XLOC_018051 NA non-coding upstream 1719194 22651976 ~ 22659422 (-)

Expression


Co-expression Network