XLOC_018044


Basic Information

Item Value
gene id XLOC_018044
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 22043510 ~ 22070176 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036826
TGATCAGTTAGGCTAACTAGTGGCAGCTGTGCGCGGAAATAAATGATAAAGGCAAACCCTGGTAAACTGACAACCAACGCGACGTCAACATACAACGACACCAACAAGAGGGTTTTATTTCAAGAATGATACAATGTCATTCGCTAAAAGACGTACTAGAGACATCAAATATGAACCGAAACACGGTCGAATCGTCCGTGAGGCTCCGCTTTAACGTCAAATAACCCGAATTCACCTTCAACGAGAAACCGAAACACCGCGTACACTTGCTGTCACCGGGTTTTAACCTCTTAATTCTCATAAAGCTCTAGCAAAAACATGCAGGCGGATATGTGCAGCACGTACCGTTTAAAAGAAAAGCAGTTAATTACCGGCATTATCTTCTCTTTAGTCGCCTCACTCCCCGTTCACATGATAATTAAACGAAGCCGAATGATGTGCGAAGCTGCAATAAATGCCAAAATCTCCAAGCTGCTAACTAATTCTGTGCGACTCACGCTGAGGTTTAGTCGGCGGGTATGTATATATTCAGCCGAGATCGCTACAGGTTGCTCTGGTAGAGCCGCGATAAAATGGTCAGGTTAAATTGGATTTAATTCCCATCCTCACAGTCGCAACCCCAGCCAAAGCGTCGGGTTGTGTGGTAAAGTAAACGAGCGGCTTCACGAGTACACACAGGCTTGCGTGCAATGCGTTAATTTCATCGACACGCTCATTGAAATGCAGGTTAAATGTGACCTGGAGAAGCGCGAGTTTACATTCTGACAAGCCCGCGTCATCAGTATAAACAGGGGCTGTGCGTGTGTATAAGCGGATAAATATAGTAACAAAGTTTAAAATGCAAAGCCACAAAGGTATAGCGGCTGTACGGACTAAATCATTGGATGCACGAGAGCTGTCCGGGCTTTAAATCGGTTGCGAACATTTGGCAGCGCAACATCGTACACTCCCCTTGTCTCACTAGGGTAGAACAAATGTGGGTCACCGGGCCTTCGGATTCTTCCCAGGCAAGCATTAAAAACACACCAGCGTATTTTCACCGCAAGAACGCTTCTATTAAATCCGCCACAAATGCGACACCGTAGACATGCAGCGCTTTCTCAAAATATCACTGTTTTGCAAGTCCGCTTGTTCCCTTACCTTGGTTACTTGCCGTCCAGGAGGGGGATTTTCTTGCGCCTTGTTTTGGTTGAGACGGCAGTGTAGGATTGAACTAGAGTTAGAAAAACAGCAGGGCCTACCCCAGGCTTCCCAAGCGCATGCGCGGTGCGGCTCGAGAAGAATCCCACACAATCTGGCAACACGCAGCAAGAGCTTGGCTGCTAGTTGGCACGCGAGAATCTACTAGAGCTTTTATTTATCTCATTGTTTTTATTCATCatgaaatataatattaagtgCATTTTAAAGAAATCAAGCAGATCGCAGGTAGTTCCCAAAATGCCATATTTAACGAACAAATCACTGATTTCCATAAAGATAACAAGAAATGTGCAAagacaaaaatgctgggttatttgaaaacaaaatttgGTACAATATAGACATACTCAACCACGGggttacatgtttgtttgtttttgtattcaaTTTATAGCCAACTTttacccaacagttgggtttatATGTATTTAACccaaagtttttgttttcaaaattactttgtttttcagataaagaaATCATgaattatgattttttaaaataataaatacaaattatcattataaaattatggaaacaattaaataaaagtctcaagcaagcaaataataattaatgataattataaataaaatagcatCACTAAGTGCCCTAAAATATGAACCAAACACATTAAAAGTCTGTCCATTTTCCcaatacatttattttctgaCATAATTTAATGACACTATGAATAGTTTAATTTTGGTATTTAATTAAAGGCTTATTGACCGCAGAGATGTAAAAATGTCGGTAACAATAAACATAGAAAACCTTCCTGTGCTTTAAAGGTTGCGTTTCGGCGTGAATTTTATGTTATACAAACGTTCCTAATCTTTGGCCCACATGTTCGCTTTTTTCTGTTTTGGCCGAGCGCCAATTAGGTCAAATACGCACCTCAACCCATCTTGAATGTGCTCAGCGCGCGCGAAAATTCTAGGGCGTGGCGTGTTGAGTGACAGTTGTCTTGTCCAATAATAAGATGATGCGAGTGCGCGACATGCTGCAGCAGTGCAGAAAGCGGAGCAAAGAGTGACATATCAGATAATAGTTAGTAGTAAAaggtcaaattaatatttttcatggAGTTGCTTGGAAGAAAAAAATAGTtacagcttatttttttataGAGACCCAGGTAATCTTACACGACGTTTAAGGTTATTTTAAAAAACCTTTACGTGATTTGCATAGTCCATAGACTAATTTCCTTACAAAAACATGTAAACGCTTCAGCGACATACAAATAAGTGCGTCAGAGACGTGTCTGTCATGTTTAAACCTATCATAACAATATATTTTACCCTAGTTCTGTCATTTATAGTGCGGAAAAATGACGCGTATTGGTGTTATTAACACAGTTTCTGCTGCTAATTATTATTTAACCTGTTAAATAATTAACTATCGTGTGATACGTGGTTATTAAGCCGACGGCTGTTGTTGTTAAATAGTAATGATACCCTACAACTTGATATGTGACGGGTTATTAGCCCACTATTATTTCATGTCTGCGCTTATGTCGGCAAACATAATCATATTTCTGTCATAAAATCTGAGCGGACTTTGTTTGCCACGTAATGTTTACACCAAGAACGGAGAGCTTGTGACACCCAGTGGTGGAAAGCTTCACACGACATTGATTGCGTTCGACATTTTCACAACCCTGAAGCTTCCTTTTTCACACCCAGCACCCAACAAAACACCCGCTACAGGACTGATGTGTTTTGAGTCATTCCCTCCAGACTCAACctctgtcatcatggtcaactcctctcagcgtctcaagtctgccaaaatacatggcgagctaactggacaaactggttacagcgggaaagctgtccatacg
>TCONS_00035568
CGTCAACATACAACGACACCAACAAGAGGGTTTTATTTCAAGAATGATACAATGTCATTCGCTAAAAGACGTACTAGAGACATCAAATATGAACCGAAACACGGTCGAATCGTCCGTGAGGCTCCGCTTTAACGTCAAATAACCCGAATTCACCTTCAACGAGAAACCGAAACACCGCGTACACTTGCTGTCACCGGGTTTTAACCTCTTAATTCTCATAAAGCTCTAGCAAAAACATGCAGGCGGATATGTGCAGCACGTACCGTTTAAAAGAAAAGCAGTTAATTACCGGCATTATCTTCTCTTTAGTCGCCTCACTCCCCGTTCACATGATAATTAAACGAAGCCGAATGATGTGCGAAGCTGCAATAAATGCCAAAATCTCCAAGCTGCTAACTAATTCTGTGCGACTCACGCTGAGGTTTAGTCGGCGGGTATGTATATATTCAGCCGAGATCGCTACAGGTTGCTCTGGTAGAGCCGCGATAAAATGGTCAGGTTAAATTGGATTTAATTCCCATCCTCACAGTCGCAACCCCAGCCAAAGCGTCGGGTTGTGTGGTAAAGTAAACGAGCGGCTTCACGAGTACACACAGGCTTGCGTGCAATGCGTTAATTTCATCGACACGCTCATTGAAATGCAGGTTAAATGTGACCTGGAGAAGCGCGAGTTTACATTCTGACAAGCCCGCGTCATCAGTATAAACAGGGGCTGTGCGTGTGTATAAGCGGATAAATATAGTAACAAAGTTTAAAATGCAAAGCCACAAAGGTATAGCGGCTGTACGGACTAAATCATTGGATGCACGAGAGCTGTCCGGGCTTTAAATCGGTTGCGAACATTTGGCAGCGCAACATCGTACACTCCCCTTGTCTCACTAGGGTAGAACAAATGTGGGTCACCGGGCCTTCGGATTCTTCCCAGGCAAGCATTAAAAACACACCAGCGTATTTTCACCGCAAGAACGCTTCTATTAAATCCGCCACAAATGCGACACCGTAGACATGCAGCGCTTTCTCAAAATATCACTGTTTTGCAAGTCCGCTTGTTCCCTTACCTTGGTTACTTGCCGTCCAGGAGGGGGATTTTCTTGCGCCTTGTTTTGGTTGAGACGGCAGTGTAGGATTGAACTAGAGTTAGAAAAACAGCAGGGCCTACCCCAGGCTTCCCAAGCGCATGCGCGGTGCGGCTCGAGAAGAATCCCACACAATCTGGCAACACGCAGCAAGAGCTTGGCTGCTAGTTGGCACGCGAGAATCTACTAGAGCTTTTATTTATCTCATTGTTTTTATTCATCatgaaatataatattaagtgCATTTTAAAGAAATCAAGCAGATCGCAGGTAGTTCCCAAAATGCCATATTTAACGAACAAATCACTGATTTCCATAAAGATAACAAGAAATGTGCAAagacaaaaatgctgggttatttgaaaacaaaatttgGTACAATATAGACATACTCAACCACGGggttacatgtttgtttgtttttgtattcaaTTTATAGCCAACTTttacccaacagttgggtttatATGTATTTAACccaaagtttttgttttcaaaattactttgtttttcagataaagaaATCATgaattatgattttttaaaataataaatacaaattatcattataaaattatggaaacaattaaataaaagtctcaagcaagcaaataataattaatgataattataaataaaatagcatCACTAAGTGCCCTAAAATATGAACCAAACACATTAAAAGTCTGTCCATTTTCCcaatacatttattttctgaCATAATTTAATGACACTATGAATAGTTTAATTTTGGTATTTAATTAAAGGCTTATTGACCGCAGAGATGTAAAAATGTCGGTAACAATAAACATAGAAAACCTTCCTGTGCTTTAAAGGTTGCGTTTCGGCGTGAATTTTA

Function

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0019184 nonribosomal peptide biosynthetic process biological_process
GO:0017109 glutamate-cysteine ligase complex cellular_component
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097598

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036826 False 3052 lncRNA 0.40 3 22043510 22070176
TCONS_00035568 True 1935 lncRNA 0.40 1 22068160 22070094

Neighbor

gene id symbol gene type direction distance location
XLOC_018043 BX296520.1 coding downstream 28215 21999156 ~ 22015295 (-)
XLOC_018042 daam1b coding downstream 48609 21815613 ~ 21994901 (-)
XLOC_018041 si:ch211-207i1.2 coding downstream 237340 21638397 ~ 21806170 (-)
XLOC_018040 BX004766.1 coding downstream 711382 21332014 ~ 21332128 (-)
XLOC_018039 btbd6b coding downstream 1110728 20927827 ~ 20932782 (-)
XLOC_018045 tmem165 coding upstream 116121 22186297 ~ 22193190 (-)
XLOC_018046 srd5a3 coding upstream 124142 22194318 ~ 22198982 (-)
XLOC_018047 kita coding upstream 265335 22335511 ~ 22378401 (-)
XLOC_018048 NA coding upstream 318940 22389116 ~ 22432496 (-)
XLOC_018049 pdgfra coding upstream 365004 22435180 ~ 22476255 (-)
XLOC_017928 CU539064.1 misc downstream 11989809 10053405 ~ 10053701 (-)
XLOC_018036 NA non-coding downstream 1352722 20681316 ~ 20690788 (-)
XLOC_018035 NA non-coding downstream 1429882 20611892 ~ 20613628 (-)
XLOC_018032 BX649231.1 non-coding downstream 1461009 20428328 ~ 20582501 (-)
XLOC_018051 NA non-coding upstream 581800 22651976 ~ 22659422 (-)
XLOC_018054 BX511028.1 non-coding upstream 840022 22910198 ~ 22910312 (-)
XLOC_018056 NA non-coding upstream 1011095 23081271 ~ 23083464 (-)
XLOC_018057 CU693368.1 non-coding upstream 1011484 23081660 ~ 23081796 (-)

Expression


Co-expression Network