XLOC_018048


Basic Information

Item Value
gene id XLOC_018048
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 22389116 ~ 22432496 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036464
GCTTTGCGCGAATTACGGAAGCAACTTCCGTTTATTAAACTGGAGGGCTACTACAAGGTGGCATCTCCTCACAAATCATCACATTAGCAGAAATTCACATTTCTTTCAGCAGACCACGAATAGACTAGGCCAAAAAAACTAGCTACTAATGTCACGTTTAAATAATTCCATTAAGAATTAAGgaAAACGTAAAAGTTATTTACATCGTGCTAACAGCTTGAAAATCATCGCCCTGGTGAAGCCTATAGCTGAAATGCAGCTCAAATATCCATTTCAACTTCTCAGACCGCCAACTCATGCATTACAGTTCAACACAGCAGTCATAAGCAAATACAGCCAGTGTGTTCATGGGAATTAGATGAATCAGGCAGCCCAGGAGCTTCAAG
>TCONS_00036465
CTTTGCGCGAATTACGGAAGCAACTTCCGTTTATTAAACTGGAGGGCTACTACAAGGTGGCATCTCCTCACAAATCATCACATTAGCAGAAATTCACATTTCTTTCAGCAGACCACGAATAGACTAGGCCAAAAAAACTAGCTACTAATGTCACGTTTAAATAATTCCATTAAGAATTAAGgaAAACGTAAAAGTTATTTACATCGTGCTAACAGCTTGAAAATCATCGCCCTGGTGAAGCCTATAGCTGAAATGCAGCTCAAATATCCATTTCAACTTCTCAGACCGCCAACTCATGCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036464 False 386 lncRNA 0.41 3 22389116 22432496
TCONS_00036465 True 301 lncRNA 0.39 2 22432112 22432495

Neighbor

gene id symbol gene type direction distance location
XLOC_018047 kita coding downstream 10715 22335511 ~ 22378401 (-)
XLOC_018046 srd5a3 coding downstream 190134 22194318 ~ 22198982 (-)
XLOC_018045 tmem165 coding downstream 195926 22186297 ~ 22193190 (-)
XLOC_018044 NA coding downstream 318940 22043510 ~ 22070176 (-)
XLOC_018043 BX296520.1 coding downstream 373821 21999156 ~ 22015295 (-)
XLOC_018049 pdgfra coding upstream 2684 22435180 ~ 22476255 (-)
XLOC_018050 gsx2 coding upstream 50552 22483048 ~ 22484621 (-)
XLOC_018051 NA coding upstream 219480 22651976 ~ 22659422 (-)
XLOC_018052 fip1l1a coding upstream 307296 22739792 ~ 22798794 (-)
XLOC_018053 BX511028.2 coding upstream 437112 22869608 ~ 23041275 (-)
XLOC_017928 CU539064.1 misc downstream 12335415 10053405 ~ 10053701 (-)
XLOC_018040 BX004766.1 non-coding downstream 1056988 21332014 ~ 21332128 (-)
XLOC_018036 NA non-coding downstream 1698328 20681316 ~ 20690788 (-)
XLOC_018035 NA non-coding downstream 1775488 20611892 ~ 20613628 (-)
XLOC_018054 BX511028.1 non-coding upstream 477702 22910198 ~ 22910312 (-)
XLOC_018056 NA non-coding upstream 648775 23081271 ~ 23083464 (-)
XLOC_018057 CU693368.1 non-coding upstream 649164 23081660 ~ 23081796 (-)
XLOC_018058 NA non-coding upstream 724587 23157083 ~ 23159498 (-)

Expression


Co-expression Network