XLOC_018055 (rasl11b)


Basic Information

Item Value
gene id XLOC_018055
gene name rasl11b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23022985 ~ 23026223 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035580
AGAAAACCAAGTAGAAGTCTTGGTGAGATCTAGGAGAAGGAATTTGGAAACATTCATATACTTTATCATTTAGAGAAAAACAGTGTCTTCGATTCTGACATTGCTTTTACGGCGTCTGTGGATATTTTGACTTAAGCCTTTTTATTCGTAAGCTTTGGATAGCATCTTCCTATCGCTCTTTTGCCAAAATGCGTCTGATCCAGAACATGTCAACTATTGCGGAGTACCCGAGCGCCGATTGCCCGTCCAGCCGGGTCATTAAGATCGCAGTCATCGGTGGCAGTGGGGTTGGCAAAACCGCATTGGTGGTTCGTTTCCTCACTAAGCGGTTTATCGGCGACTACGAGAGAAACGTTGGCAACCTGTACTCCAGAGAGGTGCAGATAGACGGAGAACAAGTGGCCATTCAAGTTCAAGACACTCCTGGAGTTCAAGTGAATGCTAATGGATTGAGCTGCACTGACCACGTGTCTCGCTCTATTCAATGGGCAGATGCTGTAGTTATGGTCTATTCAGTTACAGACCGCAAAAGCTTCGATCTCATTGGCCAGCTTCACCAGCTTGTAACCCGCACTCATTCTGATAGGTCCATACCGATCATCCTAGTAGCCAATAAAGCCGATCTCCTTCATGTGAGGCGTGTTGATGCTCAAGAAGGTCCCGTGCTGTCTTCAGCATTGAGCTGCTCCTTTTATGAAGTGTCTGCCAGCGAGGACTACAACCAGGTCCACAGTGCCTTCCACAGACTGTGCGTGGATCTGGCCAAACTGCAGCCTCAGACACCCATTAATGCAACTTCATCTGTAACAGAGAAGAAAAGATCTCCCCTCATCCCACGGCCAAAATCTCCCAACATGCAGGATCTGAAGAGGCGCTTCAAACAGGTGCTGTCTGCCAAAGTCCGCACCGTCACTTCAGTGTGAACCGGGTTCCAGTACTAGTTGGAAAAAGTGCAGGATTACGAGAGAAAAGAGGAGCAGATCTCCAGAGCAGAGATGCTGAATGTGTAGGTCTCGCTCCTTGGACCATCCTGAGAGCCGCTGATGATCAGTAGACTGGTTCCAAACAGAGGCCCCCGAAACCTGACCTCTGATTGTGTCATGTTTgctgaaataaacaaaaacagtgtGGTGAGCTTATATTTTCACTGGAGCGGTGAACGCCTTTGTTGCTGTTGCTGCAGACACAACAGGATTCTGGGAGATGTGGTCGTAATGCCTTAAAATGGGACAGTGCAAAGACAGAATGACTGAATAGAGACGCTATCATTAACACTGTCTTACCTGTGAACTTTTAAGACGCGTTCTCTTGGTAACAGAGAGCTGGTGAAGGCCGCTAAACCGACTGTTTTAGAAATGGCTTTTCTGAAAGGCATgggagaggttttttttttgttccttctGGTGGGCAAGGCTTTTACGGTCTGAATGCAGGCATTGTTAAAGGACAAGGCACTCAAGCTAAGCATATAAAAGGAGACAGAGAGTATGTGTATCTCTTACAGTCCTACTCTTGTGTGCAATGCCAGAATGTTTCTACTGGTTTAGTGAAAAACATTGCTTTGTGCCACTTTTCAAAAGTGGAGAAggagtttgttattattattatcattttttttttatgtaaacgcACTTTAAAAAAGCCAAAGGGCTGAAGctcagttatttatttgttatttgattGTGATGGGAAATAAAAAAGTTGTTAAACCTA

Function

symbol description
rasl11b Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within mesendoderm development. Predicted to be located in membrane. Is expressed in several structures, including axis; central nervous system; presumptive ectoderm; shield; and tail bud. Orthologous to human RASL11B (RAS like family 11 member B).

GO:

id name namespace
GO:0048382 mesendoderm development biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040426-793 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within mesendoderm development. Predicted to be located in membrane. Is expressed in several structures, including axis; central nervous system; presumptive ectoderm; shield; and tail bud. Orthologous to human RASL11B (RAS like family 11 member B).

Ensembl:

ensembl_id ENSDARG00000015611

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035580 True 1713 mRNA 0.45 4 23022985 23026223

Neighbor

gene id symbol gene type direction distance location
XLOC_018054 BX511028.1 coding downstream 112673 22910198 ~ 22910312 (-)
XLOC_018052 fip1l1a coding downstream 224191 22739792 ~ 22798794 (-)
XLOC_018051 NA coding downstream 363563 22651976 ~ 22659422 (-)
XLOC_018050 gsx2 coding downstream 538364 22483048 ~ 22484621 (-)
XLOC_018049 pdgfra coding downstream 546730 22435180 ~ 22476255 (-)
XLOC_018056 NA coding upstream 55048 23081271 ~ 23083464 (-)
XLOC_018057 CU693368.1 coding upstream 55437 23081660 ~ 23081796 (-)
XLOC_018058 NA coding upstream 130860 23157083 ~ 23159498 (-)
XLOC_018059 spata18 coding upstream 134289 23160512 ~ 23171430 (-)
XLOC_018060 NA coding upstream 168565 23194788 ~ 23196658 (-)
XLOC_017928 CU539064.1 misc downstream 12969284 10053405 ~ 10053701 (-)
XLOC_018048 NA non-coding downstream 590489 22389116 ~ 22432496 (-)
XLOC_018044 NA non-coding downstream 952809 22043510 ~ 22070176 (-)
XLOC_018043 BX296520.1 non-coding downstream 1007690 21999156 ~ 22015295 (-)
XLOC_018074 NA non-coding upstream 1161754 24187977 ~ 24188631 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_02994438_02996458 RASL11B coding CI01000325 null 2993615 ~ 2996663 (-)