XLOC_018066 (anapc4)


Basic Information

Item Value
gene id XLOC_018066
gene name anapc4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23475381 ~ 23494712 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035599
AGAGTCATGTTGTACTGCTACACACTATGATGAGTTTTCTGAATATCAATCTTTTTACAGTACAAATGAGAATATTATGATGCATTAAATCGCTTTCTCCAAACGTTTCAAACGAAGAATTGGATTGTGGAGTTTATTTTCATCCGTCATTTGTTTAACTATTTGTCCATTCAACAGGATTCAGCAATGCCTGCGTTTCGGCAGGTTGGGGAGAAACAGCTCCCAAACCCTATTCTGTACATGGCCTGGTGTCCTAAAAGAGATCTGATCGCTTTGGCCAACACTACAGGAGAGCTTCTTCTGCATCGGCTTGCCAACTTTCATCGGGTGTGGAGTTTACCTCCTAATGAGAACACAGGAAAAGAGATCACATCACTGGCCTGGAGACCCGATGGGAAAGTTCTAGCGTTCAGTGTGGGCGACACAAAGCAGGTGGTCCTGTGTGATGCAGAAAAGGCTGAAATCCTCCATCTGTTCCCTGTGGAATATCCAGCATCCTGCATGCACTGGATGGAGGTGCAAGATGACAGCAGCACATTGACCTCATTCAGCGAGTCTGAGGATGAGTCAAGCCGTTTTCTTCCAAAGTTACCCACTTTACCTAAAAGTGAAGAAAAATCAGAAGAAGTGACAAACCTTTTAGGGGAAGTGAGACTCAATATCCTGGTTGTTGGAGGACCATCTGGATTTGTTGAGCTGTATGCTTACGGCCTGTATAAGATTGCAACATTAAGTGGGatcttAGGGACGTGCCGTAGTCTTGGACTGTCTAGTGACCTCAAGTCTCTCTCTGTTATTACAGAGATTAGATCCACAGACGACAACCCTGAGATTCGTTACATACAGCTGGACACTGGGCTGCTGTCTTCATGTCTGCCCGAACTGACCAAGATGGCACGCAAGTTCACACATATCTCAACACTGCTACAGTATCTGCGTGTCTCTCTCACCTGCATGTGTGAAGCATGGGAGGAAATTCTTATGCAGATGGACCTCCGCCTCACTAAGTTTGTCCAGgaaaaaaacacaAGCACTCAGGTTCAGGATGAGTTTTTGGAGCTGCTGTTATGGGGCCATGCAAGCCCTGAACTTCAGGCTCTTCTCATGAATCAGCTCACAGTCAAGGGCTTGAAGATGCTGGGTCAGTCTATTGATTCTTCCTATTCCAGCATTCAGAAACTTGTTATCAGTCACTTGCAGAGTGGCTCTGAGGCGCTGCTCTATCACCTGAGCGAGGTCAAAGGAATGGCTCTATGGAAGCAGAAGTTTCAGCCTCTAGGCCTGGATCCTTCAGACATAGAGGATGCCATCGTAGCAGTGGGCTCTTTTACCCTGAAGGCCAgcgaacttttacaAGTCATCGATAAAAGTATGAAGAACTTCAAAGCCTTCTTCAGATGGCTGTATGTTGCAATGCTGCGAATGTCAGAAGATCATGTTCCTCCTGAGTTAAACAAGATGACTCAAAAGGATCTGGCTTTTGTGGCCGACTTCCTGTCTGAGCATTTCAGTGCTAACGAAGAGCTGTTTGACCGGAAAGGAAAATATTTCAACGTTGAGCGTGTCGGACAGtatttgaaGGATGAAGATGAAGACTTGGTATCTCCACCCAACATGGATGGCAACCAGTGGGTGACGTTTGTAAAACAGAGCACTCACCTGAAAGACAGTCCACTGCTCTTCCCCACTTACCCACAAAAGTCTCTGCACTTTGTCAAGAGACTGATGGAGGCGTCCATTGATCTGTGCTTACAGAAACCAGCCgcAGTCATTGGTGATTCGGTGAAACAAGCTGTGTGTTTACGCTTGTACACTGTTCCTGAGAGcTCAGAAAATACCCCAAGGCTGTTTGAGCTGCCTTCACTGTGGAATGATAAGAAGGCTGCTATGCATTATGTAGTGTTCTGCATGCCTGAGATCTCGCCCTCTAAAATCTATATTCTTAGGAGACCGACAGACCCCAACAGGTCTGTCCCTAATGGTCTGGTGGCCCTGAACCTCAACACTCCACTCAATTCTAGTATAGATGATGAAACACCTGCACCTGCTTCTGTCGACTACTCGTACAGTTGCCTTGATGCTCGGTTTTATGATGACGAGACGTTGACAGTGGTTTTGCGGAGACTGGAAGATGATGAGAATAAGATGCGCGTCCTCGCTCAGCTTCCTCTAAACTCTGCTATGAGCTGGGATGAGGAGTTCAGCTGGGACCTTTCACTCAGGTTGGAGCAGCAAACTGAGGGAATTCCAGTGCAGGGTGTTGcctggggaaaccagagcagagAGATGGACAACATCAGCGCTCAGTTTGTGGCTGTTAATGGGATCCGCAAAGTGGCCTGTGTGCTCAGTGCCAATCTAAGGCATGTACGTGTGTTTGAAATGGACGCAGAGGAGGAAGAGGATGAGGAAGAGCGAGCTGATGAGTCACAGGAAATGAGCTCAGACCAGGACAGAATTGAGGACACAAAGACTAATGAGAGTGATGCTGTTGAAGGTGGACGGGTGGAGGATGCCCAGGTGTCGGGTCAGGGGCCAAGAGACAGTTTGGATGACACTGCAGGATCAGATACACTTTGAAGATCAAACAAGTTCTACACGATGGAACTATAGACTCCTCTGTTATAACAGGTCATGTTTTTTACATAGCTAAGAAAAATTGCGATAAACATGAATATTTCACAtcttcatttgtaaataaatgaatttattggTAATACCCTGAA
>TCONS_00035600
aaaaacacaAGCACTCAGGTTCAGGATGAGTTTTTGGAGCTGCTGTTATGGGGCCATGCAAGCCCTGAACTTCAGGCTCTTCTCATGAATCAGCTCACAGTCAAGGGCTTGAAGATGCTGGGTCAGTCTATTGATTCTTCCTATTCCAGCATTCAGAAACTTGTTATCAGTCACTTGCAGAGTGGCTCTGAGGCGCTGCTCTATCACCTGAGCGAGGTCAAAGGAATGGCTCTATGGAAGCAGAAGTTTCAGCCTCTAGGCCTGGATCCTTCAGACATAGAGGATGCCATCGTAGCAGTGGGCTCTTTTACCCTGAAGGCCAgcgaacttttacaAGTCATCGATAAAAGTATGAAGAACTTCAAAGCCTTCTTCAGATGGCTGTATGTTGCAATGCTGCGAATGTCAGAAGATCATGTTCCTCCTGAGTTAAACAAGATGACTCAAAAGGATCTGGCTTTTGTGGCCGACTTCCTGTCTGAGCATTTCAGTGCTGTGAGTGAGAAATGCATGCTTTAAACTTTAATGAAACATTTAGTGTAAGGCCATGTTCACGTGTTCTGTCCTGTGTTTCAGAACGAAGAGCTGTTTGACCGGAAAGGAAAATATTTCAACGTTGAGCGTGTCGGACAGtatttgaaGGATGAAGATGAAGACTTGGTATCTCCACCCAACATGGATGGCAACCAGTGGGTGACGTTTGTAAAACAGAGCACTCACCTGAAAGACAGTCCACTGCTCTTCCCCACTTACCCACAAAAGTCTCTGCACTTTGTCAAGAGAC
>TCONS_00035601
AATTTCATTGGCGGGTCAGAGTCATGTTGTACTGCTACACACTATGATGAGTTTTCTGAATATCAATCTTTTTACAGTACAAATGAGAATATTATGATGCATTAAATCGCTTTCTCCAAACGTTTCAAACGAAGAATTGGATTGTGGAGTTTATTTTCATCCGTCATTTGTTTAGTAAGATTCAGCAATGCCTGCGTTTCGGCAGGTTGGGGAGAAACAGCTCCCAAACCCTATTCTGTACATGGCCTGGTGTCCTAAAAGAGATCTGATCGCTTTGGCCAACACTACAGGAGAGCTTCTTCTGCATCGGCTTGCCAACTTTCATCGGGTGTGGAGTTTACCTCCTAATGAGAACACAGGAAAAGAGATCACATCACTGGCCTGGAGACCCGATGGGAAAGTTCTAGCGTTCAGTGTGGGCGACACAAAGCAGGTGGTCCTGTGTGATGCAGAAAAGGCTGAAATCCTCCATCTGTTCCCTGTGGAATATCCAGCATCCTGCATGCACTGGATGGAGGTGCAAGATGACAGCAGCACATTGACCTCATTCAGCGAGTCTGAGGATGAGTCAAGCCGTTTTCTTCCAAAGTTACCCACTTTACCTAAAAGCTACAGCACCACATCAAAGATATTTAGTGAAGAAAAATCAGAAGAAGTGACAAACCTTTTAGGGGAAGTGAGACTCAATATCCTGGTTGTTGGAGGACCATCTGGATTTGTTGAGCTGTATGCTTACGGCCTGTATAAGATTGCAACATTAAGTGGGatcttAGGGACGTGCCGTAGTCTTGGACTGTCTAGTGACCTCAAGTCTCTCTCTGTTATTACAGAGATTAGATCCACAGACGACAACCCTGAGATTCGTTACATACAGCTGGACACTGGGCTGCTGTCTTCATGTCTGCCCGAACTGAC

Function

symbol description
anapc4 Predicted to be involved in anaphase-promoting complex-dependent catabolic process; positive regulation of mitotic metaphase/anaphase transition; and protein K11-linked ubiquitination. Predicted to act upstream of or within cell division and regulation of mitotic metaphase/anaphase transition. Predicted to be part of anaphase-promoting complex. Predicted to be active in nuclear periphery. Orthologous to human ANAPC4 (anaphase promoting complex subunit 4).

GO:

id name namespace
GO:0045842 positive regulation of mitotic metaphase/anaphase transition biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0030071 regulation of mitotic metaphase/anaphase transition biological_process
GO:0005680 anaphase-promoting complex cellular_component
GO:0034399 nuclear periphery cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041212-10 Predicted to be involved in anaphase-promoting complex-dependent catabolic process; positive regulation of mitotic metaphase/anaphase transition; and protein K11-linked ubiquitination. Predicted to act upstream of or within cell division and regulation of mitotic metaphase/anaphase transition. Predicted to be part of anaphase-promoting complex. Predicted to be active in nuclear periphery. Orthologous to human ANAPC4 (anaphase promoting complex subunit 4).

Ensembl:

ensembl_id ENSDARG00000032237

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035599 False 2726 mRNA 0.46 28 23475381 23494695
TCONS_00035600 False 784 lncRNA 0.46 10 23480453 23488144
TCONS_00035601 True 915 mRNA 0.45 10 23488517 23494712

Neighbor

gene id symbol gene type direction distance location
XLOC_018065 slain2 coding downstream 3062 23446243 ~ 23472319 (-)
XLOC_018064 slc10a4 coding downstream 34426 23431485 ~ 23440955 (-)
XLOC_018063 zar1 coding downstream 49042 23423814 ~ 23426339 (-)
XLOC_018062 ociad1 coding downstream 220505 23245620 ~ 23254876 (-)
XLOC_018061 dcun1d4 coding downstream 248928 23203946 ~ 23226453 (-)
XLOC_018067 cbr4 coding upstream 156120 23650832 ~ 23657304 (-)
XLOC_018068 si:dkey-15j16.3 coding upstream 344102 23838814 ~ 23842631 (-)
XLOC_018069 si:dkey-15j16.6 coding upstream 352668 23847380 ~ 23852174 (-)
XLOC_018070 katna1 coding upstream 366146 23860858 ~ 23876291 (-)
XLOC_018071 mdn1 coding upstream 382587 23877299 ~ 23946296 (-)
XLOC_017928 CU539064.1 misc downstream 13421680 10053405 ~ 10053701 (-)
XLOC_018060 NA non-coding downstream 278723 23194788 ~ 23196658 (-)
XLOC_018058 NA non-coding downstream 315883 23157083 ~ 23159498 (-)
XLOC_018056 NA non-coding downstream 391917 23081271 ~ 23083464 (-)
XLOC_018057 CU693368.1 non-coding downstream 393585 23081660 ~ 23081796 (-)
XLOC_018054 BX511028.1 non-coding downstream 565069 22910198 ~ 22910312 (-)
XLOC_018074 NA non-coding upstream 693265 24187977 ~ 24188631 (-)
XLOC_018075 NA non-coding upstream 740214 24234926 ~ 24272463 (-)
XLOC_018077 NA non-coding upstream 953295 24448007 ~ 24454929 (-)
XLOC_018078 NA non-coding upstream 1234419 24729131 ~ 24732309 (-)
XLOC_018080 NA non-coding upstream 1813083 25307795 ~ 25311454 (-)

Expression


Co-expression Network