XLOC_018067 (cbr4)


Basic Information

Item Value
gene id XLOC_018067
gene name cbr4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23650832 ~ 23657304 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035602
ACAGTGTAGTCAATATGGCGGCGTCCATAACTTCAGTTCACTTTTAGCgacaaacaataaagaaaaaaactagCGTATGATATTGACTTTTAACGCTGGGGATGTCCAGGCTGGCTGTGGTGTTCGGGGGTTCGCGTGGCATTGGGCGAGCAGTCTCTAAGCTGTTGGCACAGAGGGGTCACAGGATTGTGCTGTTGTCTAGGAATAAAGAGGCTGCACAGGCCACTGCTCAATCTCTCCCTGGAGAAAACCATTTGGGCCTAAGCTGCGATGTCTCAAAAGAAGAAGAGGTTCAGAAAGCGTTTGAGACCATCAATAAGACCTGTGGCACTGTAGGGTTCCTGGTTAATGCGGCTGGCATCAACAGagatGCGCTGTTATTGAGGAGTAAATCTGAAGACATGCTGTCTGTTTTGCACACTAACCTGCTGGGCTCCATGCTGACATGTAAGGCCGCTGTACGAAACATGCTCAGTCATGGAGGAGCCATTGTCAACATCGGTTCAGTGGTGGGTGTGAAGGGTAATGCTGGTCAGTGTGTGTACAGCGCCAGTAAAGCTGGACTAGAGGGATTCACTCGCTCACTGGCAAAGGAAGTGGCTTCTCGTAACATACGAGTGAACTTGGTGGCTCCAGGATTGATTCACACAGACATGACTGCAGGACTGGCAGAAGAAGCAGCGGTGAGGACCATTCCATTGGGCCGTTTTGGGGAACCTGCAGAAGTGGCCCAGGCTGTGCTTTTCCTCCTGGAGTCGCCTTATATCACAGGACAGATTCTGCTGGTGGACGGAGGACTACAGCTGCTGATGTAATGATTCTATGAGTCACTGAAGTATTAAAgtgcatatttttgttttggtgaTTATACCCAATATCTCTATTTAGGGGTTGAGTCAAAGCTCGATATTGTTAATCTTCTTCTCATCACTCTGTGGAATTCTGAGTCATGTAAAACATTGTGTAAGAGTAGTTTTGGACCATCTGGATTagattaatgttatttttagttCACTGGAGTTTTTGGGTTATTGCTGCATGTTCCATACTTAAGATAATGGAGGTCACAGATCAACCAGCGGAGGATATGACTCGTTTTGTGATGTCATTTCTATTTTTAGCATACATAGTTTATTCAGATATAAATGATGTTAGAATCGCAGGTTTGTAAAAGATCAGAAATATACAGATTTTAAAATCAAGAATGAactaaacactgaaaaaaaatatttatagatgattccttgaattaactacatttttttttcgttaagtggttgtaatcaatttatttgggctaaatttaaacaagttaagttgaatattattacatttgtttaaatttaacaca
>TCONS_00035603
TTTTTCTCTGATAGGCTGGGGATGTCCAGGCTGGCTGTGGTGTTCGGGGGTTCGCGTGGCATTGGGCGAGCAGTCTCTAAGCTGTTGGCACAGAGGGGTCACAGGATTGTGCTGTTGTCTAGGAATAAAGAGGCTGCACAGGCCACTGCTCAATCTCTCCCTGGAGAAAACCATTTGGGCCTAAGCTGCGATGTCTCAAAAGAAGAAGAGGTTCAGAAAGCGTTTGAGACCATCAATAAGACCTGTGGCACTGTAGGGTTCCTGGTTAATGCGGCTGGCATCAACAGagatGCGCTGTTATTGAGGAGTAAATCTGAAGACATGCTGTCTGTTTTGCACACTAACCTGCTGGGCTCCATGCTGACATGTAAGGCCGCTGTACGAAACATGCTCAGTCATGGAGGAGCCATTGTCAACATCGGTTCAGTGGTGGGTGTGAAGGGTAATGCTGGTCAGTGTGTGTACAGCGCCAGTAAAGCTGGACTAGAGGGATTCACTCGCTCACTGGCAAAGGAAGTGGCTTCTCGTAACATACGAGTGAACTTGGTGGCTCCAGGATTGATTCACACAGACATGACTGCAGGACTGGCAGAAGAAGCAGCGGTGAGGACCATTCCATTGGGCCGTTTTGGGGAACCTGCAGAAGTGGCCCAGGCTGTGCTTTTCCTCCTGGAGTCGCCTTATATCACAGGACAGATTCTGCTGGTGGACGGAGGACTACAGCTGCTGATGTAATGATTCTATGAGTCACTGAAGTATTAAAgtgcatatttttgttttggtgaTTATACCCAATATCTCTATTTAGGGGTTGAGTCAAAGCTCGATATTGTTAATCTTCTTCTCATCACTCTGTGGAATTCTGAGTCATGTAAAACATTGTGTAAGAGTAGTTTTGGACC

Function

symbol description
cbr4 Predicted to enable 3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity and quinone binding activity. Predicted to be involved in fatty acid biosynthetic process and protein heterotetramerization. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be part of oxidoreductase complex. Orthologous to human CBR4 (carbonyl reductase 4).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0051290 protein heterotetramerization biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0048038 quinone binding molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0047025 3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity molecular_function

KEGG:

id description
ko00061 Fatty acid biosynthesis

ZFIN:

id description
ZDB-GENE-040426-1796 Predicted to enable 3-oxoacyl-[acyl-carrier-protein] reductase (NADH) activity and quinone binding activity. Predicted to be involved in fatty acid biosynthetic process and protein heterotetramerization. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be located in mitochondrial matrix. Predicted to be part of oxidoreductase complex. Orthologous to human CBR4 (carbonyl reductase 4).

Ensembl:

ensembl_id ENSDARG00000009074

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035602 False 1351 mRNA 0.42 6 23650832 23657304
TCONS_00035603 True 902 mRNA 0.49 5 23651201 23656516

Neighbor

gene id symbol gene type direction distance location
XLOC_018066 anapc4 coding downstream 156120 23475381 ~ 23494712 (-)
XLOC_018065 slain2 coding downstream 178513 23446243 ~ 23472319 (-)
XLOC_018064 slc10a4 coding downstream 209877 23431485 ~ 23440955 (-)
XLOC_018063 zar1 coding downstream 224493 23423814 ~ 23426339 (-)
XLOC_018062 ociad1 coding downstream 395956 23245620 ~ 23254876 (-)
XLOC_018068 si:dkey-15j16.3 coding upstream 181510 23838814 ~ 23842631 (-)
XLOC_018069 si:dkey-15j16.6 coding upstream 190076 23847380 ~ 23852174 (-)
XLOC_018070 katna1 coding upstream 203554 23860858 ~ 23876291 (-)
XLOC_018071 mdn1 coding upstream 219995 23877299 ~ 23946296 (-)
XLOC_018072 bach2b coding upstream 315644 23972948 ~ 24122881 (-)
XLOC_017928 CU539064.1 misc downstream 13597131 10053405 ~ 10053701 (-)
XLOC_018060 NA non-coding downstream 454174 23194788 ~ 23196658 (-)
XLOC_018058 NA non-coding downstream 491334 23157083 ~ 23159498 (-)
XLOC_018056 NA non-coding downstream 567368 23081271 ~ 23083464 (-)
XLOC_018057 CU693368.1 non-coding downstream 569036 23081660 ~ 23081796 (-)
XLOC_018054 BX511028.1 non-coding downstream 740520 22910198 ~ 22910312 (-)
XLOC_018074 NA non-coding upstream 530673 24187977 ~ 24188631 (-)
XLOC_018075 NA non-coding upstream 577622 24234926 ~ 24272463 (-)
XLOC_018077 NA non-coding upstream 790703 24448007 ~ 24454929 (-)
XLOC_018078 NA non-coding upstream 1071827 24729131 ~ 24732309 (-)
XLOC_018080 NA non-coding upstream 1650491 25307795 ~ 25311454 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_03425085_03427300 CBR4 coding CI01000325 null 3424221 ~ 3427792 (-)