XLOC_018072 (bach2b)


Basic Information

Item Value
gene id XLOC_018072
gene name bach2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 23972948 ~ 24122881 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035608
GGATGACGTCAGTGCGCGAATGTCAACAATGTAGCGATTGAGAGTAGGCGTTTCATTCGAGTGTAACAAACAGAGGAGACGGAGCCGCACGCTGCAGagatcagcacacacacattcacacacattttagacACACTATTTCAAGCATAAACGCGCATTTTTTCCTCGTAAACGCAAAACGAAATATTAAACGAGTGCACCGCAAAACGTGATCTCCCTGCAGCCCGGGGGCTTTAGGAGTCTGCAAGGAAGTCATCatgtgaaaaaaatacattatttgctAAACGGACAATAGGGCTGGATCACAAGGAAAAGAAAAGACTAGGCTGAAGGAAAGGAAGTATGGCTGAGGTTTACAGTCAATGAAGTCGGAGGGGCGTGTGTTAGCGTGACAGAGGTGGAGCTTAatccacagagagagagagagactcctCTGTGAGGAGGCCTGTGCCGTCGACCCCGAAAACCCATCCGAGAAGTGTTGCTGGCGCTGCACCACAACATGCGTCTCAATCCCACAGTCACGCGGGAGCATCTCAGCGCATGCTAACACTTGGAGCTGTCATTGCCACCTCCTGTCAGAGCAGTCAAACAATGGAGCAAACCACTGGTGTGAGCGGTATGTCCGTGGATGAGAAGTCTGAAGCTCCCATGTACGTGTATGAGTCGACAGTGCACTGTACCAACATCCTGCTGGGTCTGAATGAGCAGCGGAAGCAGGGCCTGCTCTGCGATGTGACCGTGCTGGTGGAGGGCAAGGAGTTTCGCGCACACAGGGCTGTACTAGCGGCCTGCAGCGAGTACTTCCTACAGGGGTTTGCCACCCAAACTGACAATGATCTGGTGCTCAGCATGCCAGAGGAGgtcaGTGCCCGGGGATTCGCTCCATTGTTACAGTTTGCCTATACGGCTAAGCTGCTGCTCAGCAGAGAAAACATCCAGGAGGTCATCCGCTGTGCCGAATTCCTGCGCATGCACAACCTGGAGGACTCGTGCTTTCGCTTCCTGGAGGCCCAGCTGCGCAGTGAAGAGGACGGCCTGCTCCTGTGCCGCAAGATGGCGTCGGAGAGCAATCACTCAGAGGATGAGGGCATGCAACCTGAGTTGCTGACGACAACTGCAGTGACGCTACCTGGTTCTCCACGATCTCGTCTTTGTGCCGAGGCCTTGCACTCCTTGCGGCGACCGGACCACGAGCAGCTGGCAGGAACGGAAGATTTCACTGATGGGCCGATGGACTTTGAGCGACATGGCACCTCAGACCTGCCACGATGCCCTAAGTACAGAAAGTACCAGTTAGCATGCAACAAGCACAATAACGACGCCTCTTCACACACCAGTACCTCAGGTTTTCCAAGCACATTCAAGGAGATGAGCAGGCCGGCTGTGATGCAAATCAAGCAAGAACCCCGCAGCGAGGAAGAGTCCATCTCACTTTGCCTGTCAGGGAATGAGCAGGAGGATGGTGAAAAGGACGATGTGGCTGAGATGGACCTGGATGGTTCCATCACAGTGGACCAACCAAAAGGCAGAAGCAAGTCACCCACCTGCCTACGGGCTCTGTTCAAGAAGGACCTGCCCAGCACACCCCAGCAGCTCTTAGCTAACAGACTCATCAACGCCCAGGATAAAGGAACCACTCAGGGAGACCACAAAAAAGACTACAGGCCTTCGCTTGGCAATGAGTTTGGCATGCCTGTGGCGTTCCCCAAAGACACTGATGGTTTCCCGCCAGGGCTTTCGTTGAAGTCGCCTTCCTGCGATGGTGTGTGCAAGCAAGAGGTGGAGCCGGACCGCCGCAGTGTCATCTTCTCCTCAGGGGCCTGTGACCGACTGGGTACACCCACCCACTCCCATCCCAGCGGGAACTCATTGGAGAAGGAGCTCTCAGAACACATGCCAAAGGGATTGTGGGCCGGCGCCAGCCAGTCCCTTCCCAGCTCTCAGACCTACTCCCCTAGTACCACAGCCAGCGACCCGCCCTTGCTTTGCCGCCAAAGGCCCAATACCAGCTGCCCAGTGCCAATTAAGGTATGCCCACGATCGCCCCCTTCAGAGACCCGCACTCGGACCTCCAGTTCCTGTTCGTCCTATTCTTACGCTGAGGACGGAAGCGGGGGGTCCCCCTGCAGCCTGCCGCAGTTTGAGTTTTCACCCTCGCCTTGCCCCAATGTGACGCGGTGTCTCACCTCTGACCAACAAGAGGCAGGTGGTGGGACGGATGCACTATTTGCACGGGTACGGCCCAAGATAAAGTGTGAGCAGTCATATGGAACCAATTCCAGTGATGAGTCAGGGTCCTTTTCGGAGGGGGACAGTGAATCATGTCATGTTCGAGAGCAAGGCCCTGAGGTCAAGCTCCCGTTCCCTGTTGATCAAATCACAAATCTTCCACGCAACGACTTCCAAATGATGGTGAAAATGCACAAGCTGACCTCAGAGCAGCTGGAGTTCATCCACGACGTGCGCAGACGTAGTAAAAATCGCATCGCGGCACAGCGCTGCCGCAAGAGAAAACTTGACTGCATCCTGAACCTTGAGTGTGAAATACGCAAACTGGTGTGTGAAAAGGAGAAGCTGTTAACAGAGCGCAACCAGTTAAAGGCGTGCATGGGAGAGTTATGGGAGAATTTCTCCTGTCTGTCGGAAGAGGTGTGTCGAGATGTGCAGCTGAGCCCTGAACAGGTACATCACTACTGCCCTATACTGCGCCCCGGCAACACCGCCTCCGTCGCCCCCGGCAGCATCGACCTCACCGCCTCCTCCACCCCAGAACAGAGCTTCCACAAATCATCCTCCACAAAAGACGGGACAACCCGAAAGCCCCAGTGGAAAACTGGCAACGGGGCTGAAGACGCAGCCAACCACAGGGAGGAGCAAGAGGCCGGCTCTGCCTTTATGGAGGTGGGGCTTTCCCTGGAACAGTCCAATCAAACGGTGACAGTAGACTTCTGTCAAGAGATGACAGATAAATGTACAACTGACGAACAGCCCAACAGAAAGGACTGTACCTAATGACGGTGGTTTCTCtgtgttgatttgttttttattattatttaatttagttatgtCTTCTGACAAACCCTCACAAGTCGAGGGCTGTTGAGATGGCCAGCCTCTGCcagtgtttttgatttttttttacatatatatatatatatatatatttatgtctttttattgtctttttttaaacaaaggttGACACTACAGTTGTCTTAACAGCAGCAATACTGTTCTCCAGGTTCTGTCTAGTTCAGCCATGGCAGAGTGGCTGAGACCTTCTCACAGAACTTCACAATGGTGCTACACCTTTCCAGGACAGTGGAGACACTGTCTGTTTCCAATTACAGTCCATTCAGTTGGGATGGGCGCTGACCACATCTCAAATTCAGACCTCTACGGACCTAGCAGCAGCTTTTTGCTCTCTTTTTGTCTCTTTCTTCCCTCTCCACCTTCATTCACTCCTCCTGCCCTCTACCTCTAAATCTCCCCCTCTCTCTATCTTCTCTTTCTCTTTGTGGCCCTTGTCACAGTAAATTCAAACTCAGGAAATATTCTGAATGTTCAGTATAactcatgaaaaaaaataatacagatttttttttctacagcagCTAGACTGTAAATGTCCATATGCAAAAATGTCTTCTGCATCATGCGTTTGTAGTGTCTGCGTACCGTAATTTGTACAGACGGTGGTATCTAAAAACATTCCTCCTTTGCCTTCCACAGCACTGATACGAAATAAAGTACGACGGAGAAGACTCGCATCGTAGTTTTGGCCACCTTTTTGCGTCAGCAATACTATACCATTGGATGTTTTCGAGAAGTGCTTGCTCGACAGAAAGCGTATTGTAAATAGTACGGTGCATGGAGATGGGCTAGATAATATTGTACAGGTAGTAACCTTCGCGCtttttgtttttcgttttctttctGTTCTCTGGGGTTTTATCAAGCACCTTTTTGTCACGAAGGGAAAATCGTTGCTGTTTCCTGTCTCGAATGAATTCCCCATGACGATGGATGTGCTTAAACTCAGGAAACTAGCATTCTTACactcacgcatgcacacacacgctcGCATACGACCCCCCTGGTGCAGCGCATAGACCCCCTTGCATGTGATTTGGATGTAAACGGTGTGCGTAGTGGTGAGCTGTTCTTCTATAAATGTGAAAACGTGCTCTTATCAGTATTTACAATGTGCTCACggacacctgcgaacagtgttaTCTTTAACACACCTTTCAGTTTTAGCCCATTTTACAGAACGGAAATGATGTTGAACTCAATTTAGTTTTCCCCTCCCTCAGCACTCTTTGATTGTTCAGCACTTCTGAAAGGGATTTCTTTTTCAGAACCCTAAAAAGTCTGAAATTGAAGCACTTAATGTGAACACTTAAAGTGTCTCTCTTGGCTGATGATCTTTAAAGACACAATATCTTATAAAGAACGTTTTCaagttcatttaaattaaaaaaagaagtgttcaaattaaatatttatggaAGACACTAAAAAGCTGCTTTTAAAGTGTGTTGTTCACACTTGTAGGTTGGTTATTTTGGTCCAGGCCAAATAATTGAGACACATGGTCCTGGTTCACTTACAATCTGTGTTGcatttaggcatgggccggtataagattctgtcagtgtgataatcttggataaaaatattacggttt
>TCONS_00035609
ATGTCCGTGGATGAGAAGTCTGAAGCTCCCATGTACGTGTATGAGTCGACAGTGCACTGTACCAACATCCTGCTGGGTCTGAATGAGCAGCGGAAGCAGGGCCTGCTCTGCGATGTGACCGTGCTGGTGGAGGGCAAGGAGTTTCGCGCACACAGGGCTGTACTAGCGGCCTGCAGCGAGTACTTCCTACAGGGGTTTGCCACCCAAACTGACAATGATCTGGTGCTCAGCATGCCAGAGGAGgtcaGTGCCCGGGGATTCGCTCCATTGTTACAGTTTGCCTATACGGCTAAGCTGCTGCTCAGCAGAGAAAACATCCAGGAGGTCATCCGCTGTGCCGAATTCCTGCGCATGCACAACCTGGAGGACTCGTGCTTTCGCTTCCTGGAGGCCCAGCTGCGCAGTGAAGAGGACGGCCTGCTCCTGTGCCGCAAGATGGCGTCGGAGAGCAATCACTCAGAGGATGAGGGCATGCAACCTGAGTTGCTGACGACAACTGCAGTGACGCTACCTGGTTCTCCACGATCTCGTCTTTGTGCCGAGGCCTTGCACTCCTTGCGGCGACCGGACCACGAGCAGCTGGCAGGAACGGAAGATTTCACTGATGGGCCGATGGACTTTGAGCGACATGGCACCTCAGACCTGCCACGATGCCCTAAGTACAGAAAGTACCAGTTACACAATAACGACGCCTCTTCACACACCAGTACCTCAGGTTTTCCAAGCACATTCAAGGAGATGAGCAGGCCGGCTGTGATGCAAATCAAGCAAGAACCCCGCAGCGAGGAAGAGTCCATCTCACTTTGCCTGTCAGGGAATGAGCAGGAGGATGGTGAAAAGGACGATGTGGCTGAGATGGACCTGGATGGTTCCATCACAGTGGACCAACCAAAAGGCAGAAGCAACACACCCCAGCAGCTCTTAGCTAACAGACTCATCAACGCCCAGGATAAAGGAACCACTCAGGGAGACCACAAAAAAGACTACAGGCCTTCGCTTGGCAATGAGTTTGGCATGCCTGTGGCGTTCCCCAAAGACACTGATGGTTTCCCGCCAGGGCTTTCGTTGAAGTCGCCTTCCTGCGATGGTGTGTGCAAGCAAGAGGTGGAGCCGGACCGCCGCAGTGTCATCTTCTCCTCAGGGGCCTGTGACCGACTGGGTACACCCACCCACTCCCATCCCAGCGGGAACTCATTGGAGAAGGAGCTCTCAGAACACATGCCAAAGGGATTGTGGGCCGGCGCCAGCCAGTCCCTTCCCAGCTCTCAGACCTACTCCCCTAGTACCACAGCCAGCGACCCGCCCTTGCTTTGCCGCCAAAGGCCCAATACCAGCTGCCCAGTGCCAATTAAGGTATGCCCACGATCGCCCCCTTCAGAGACCCGCACTCGGACCTCCAGTTCCTGTTCGTCCTATTCTTACGCTGAGGACGGAAGCGGGGGGTCCCCCTGCAGCCTGCCGCAGTTTGAGTTTTCACCCTCGCCTTGCCCCAATGTGACGCGGTGTCTCACCTCTGACCAACAAGAGGCAGGTGGTGGGACGGATGCACTATTTGCACGGGTACGGCCCAAGATAAAGTGTGAGCAGTCATATGGAACCAATTCCAGTGATGAGTCAGGGTCCTTTTCGGAGGGGGACAGTGAATCATGTCATGTTCGAGAGCAAGGCCCTGAGGTCAAGCTCCCGTTCCCTGTTGATCAAATCACAAATCTTCCACGCAACGACTTCCAAATGATGGTGAAAATGCACAAGCTGACCTCAGAGCAGCTGGAGTTCATCCACGACGTGCGCAGACGTAGTAAAAATCGCATCGCGGCACAGCGCTGCCGCAAGAGAAAACTTGACTGCATCCTGAACCTTGAGTGTGAAATACGCAAACTGGTGTGTGAAAAGGAGAAGCTGTTAACAGAGCGCAACCAGTTAAAGGCGTGCATGGGAGAGTTATGGGAGAATTTCTCCTGTCTGTCGGAAGAGGTGTGTCGAGATGTGCAGCTGAGCCCTGAACAGGTACATCACTACTGCCCTATACTGCGCCCCGGCAACACCGCCTCCGTCGCCCCCGGCAGCATCGACCTCACCGCCTCCTCCACCCCAGAACAGAGCTTCCACAAATCATCCTCCACAAAAGACGGGACAACCCGAAAGCCCCAGTGGAAAACTGGCAACGGGGCTGAAGACGCAGAGCAAGAGGCCGGCTCTGCCTTTATGGAGGTGGGGCTTTCCCTGGAACAGTCCAATCAAACGGTGACAGTAGACTTCTGTCAAGAGATGACAGATAAATGTACAACTGACGAACAGCCCAACAGAAAGGACTGTACCTAA
>TCONS_00035610
ttttagacACACTATTTCAAGCATAAACGCGCATTTTTTCCTCGTAAACGCAAAACGAAATATTAAACGAGTGCACCGCAAAACGTGATCTCCCTGCAGCCCGGGGGCTTTAGGAGTCTGCAAGGAAGTCATCatgtgaaaaaaatacattatttgctAAACGGACAATAGGGCTGGATCACAAGGAAAAGAAAAGACTAGGCTGAAGGTCTTTTATTCTGTTTTGATCATCACTACTCAAGGCGTCAGTGTTTGCATTCAGACTGCAGACTTCATGCTTCTGTTGCTATTGAACATTTTCTAACACAGTAATAAAAATAGACTAAAGCTGTTTTATGAAATGAAATGTCAGCTACTATTTTTGGATCAAAGGCAGGTTTTGCTGTGATCACACTTGTCAGAGGTTTAATAGACATCGCTGAATTGTTGTCATTTAGGAATTAGATTATGCGGGTGCgtgtttgaattgagatcacagTCTTTCAAAGATTAATCTTGCCATTGTAACGTGCGCGGATAAATCATTTCAAATAAATTCTGCTGTATTCCAACA
>TCONS_00035611
ttttagacACACTATTTCAAGCATAAACGCGCATTTTTTCCTCGTAAACGCAAAACGAAATATTAAACGAGTGCACCGCAAAACGTGATCTCCCTGCAGCCCGGGGGCTTTAGGAGTCTGCAAGGAAGTCATCatgtgaaaaaaatacattatttgctAAACGGACAATAGGGCTGGATCACAAGGAAAAGAAAAGACTAGGCTGAAGCCAGAGGAGCATTGTTGCAGAAAGGATCTCAAAAAAAAGCTCCATATTCTCCTCCATCTGGCAGAGGTGATTAGCTGAAGTTGGGCAGATGGTGCCATGGCTCGCTTCCTCATAGCTTTGGGGGTAAATCTACACATACTTCCTTACAAGGCCAGTTGAATGAGTGTTTGCTATTAGCAGAGCTCGTCGCTATCCCTGCACTTGATCTGCACTCACAGATTTCAATGATAGAGTTATAATGATTACAATCATTATGATCTTtaaaattgtttacatttatgaatattcaACAAATATTTAGTATTTCTTTATTTTGCGTTAAAAAAGATGGAaga

Function

symbol description
bach2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Is expressed in head; myotome; somite; somite border; and trunk. Human ortholog(s) of this gene implicated in immunodeficiency 60. Orthologous to human BACH2 (BTB domain and CNC homolog 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-139 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Is expressed in head; myotome; somite; somite border; and trunk. Human ortholog(s) of this gene implicated in immunodeficiency 60. Orthologous to human BACH2 (BTB domain and CNC homolog 2).

Ensembl:

ensembl_id ENSDARG00000004074

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035608 False 4693 mRNA 0.49 6 23972948 24122881
TCONS_00035609 False 2322 mRNA 0.56 7 23974626 24022558
TCONS_00035610 False 553 lncRNA 0.38 2 24064689 24122757
TCONS_00035611 True 543 processed_transcript 0.39 2 24083139 24122757

Neighbor

gene id symbol gene type direction distance location
XLOC_018071 mdn1 coding downstream 26652 23877299 ~ 23946296 (-)
XLOC_018070 katna1 coding downstream 96657 23860858 ~ 23876291 (-)
XLOC_018069 si:dkey-15j16.6 coding downstream 120774 23847380 ~ 23852174 (-)
XLOC_018068 si:dkey-15j16.3 coding downstream 130317 23838814 ~ 23842631 (-)
XLOC_018067 cbr4 coding downstream 315644 23650832 ~ 23657304 (-)
XLOC_018073 map3k7 coding upstream 26913 24149794 ~ 24183382 (-)
XLOC_018074 NA coding upstream 65096 24187977 ~ 24188631 (-)
XLOC_018075 NA coding upstream 112045 24234926 ~ 24272463 (-)
XLOC_018076 CR385053.3 coding upstream 312790 24435671 ~ 24443680 (-)
XLOC_018077 NA coding upstream 325126 24448007 ~ 24454929 (-)
XLOC_017928 CU539064.1 misc downstream 13919247 10053405 ~ 10053701 (-)
XLOC_018060 NA non-coding downstream 776290 23194788 ~ 23196658 (-)
XLOC_018058 NA non-coding downstream 813450 23157083 ~ 23159498 (-)
XLOC_018056 NA non-coding downstream 889484 23081271 ~ 23083464 (-)
XLOC_018057 CU693368.1 non-coding downstream 891152 23081660 ~ 23081796 (-)
XLOC_018054 BX511028.1 non-coding downstream 1062636 22910198 ~ 22910312 (-)
XLOC_018078 NA non-coding upstream 606250 24729131 ~ 24732309 (-)
XLOC_018080 NA non-coding upstream 1184914 25307795 ~ 25311454 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G464627 NA non-coding CI01000325 null 3732268 ~ 3788530 (-)