XLOC_018083 (si:dkey-183n20.15)


Basic Information

Item Value
gene id XLOC_018083
gene name si:dkey-183n20.15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 25473056 ~ 25486384 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035629
ATTACGAACAGAAAACATGCACACTAATCATAGCTACAGCAACAGGTCCTCGCTATTACCAAAGATAAGGAGTCAAGGTTGTCCACACAATGCTCACGTGAACAACAGAGAGGATCTGCCTAAGATGTGGTTACCAGCAGGCAGCAGGGACGTCCATTGCCCTGTGTGTTTACAGATGGCCACCTATCCTGTTGAGACCAACTGTGGGCATCTATTCTGTGCACCATGTTTGATATCCTACTGGAAACACTGCTCCTGGTTAGATGCCATCAGCTGCCCTCTGTGCAGACAGACGGTGAAAAAGATGTGCCACCTTTTCAGTGAGAACAAGACTGACTGTAAAGAGAGAGAAGTGCTGAGACACGTGAGAGACTATAACAAGCGATACTCTGGCGCACCAAGACAGGTGAAAGATTACCTGTGTGATGCTCCGCTCTTCCTGCTGGTTCTGGTCAGGGGGCTGGGCAATATGGGTGGCTTGGTGTGGCTGTTTCTCCTGCGGGTGGCAGTGTGTGGATTTGGCGCCGCCATGTCGTTGGCGGCTCTTCCCGGGCCGCTGAGCAGTGCGTTGGGCATCCTGGATGATTTCGTTGTGGTCTTTCTTCTGCTTATTTGCATTATTAACATCAATCAACAGATGGGGCCCCAGAGGACCCGAACGCACTCCATCACTCAGGGTGTGCTGACCGACACGTTGTGATAATGCGCACGCTAGCATGTTCAAATGACGCTAATCAACCTTGTTGGCAAAGGTTAACAGTGTTATGACCTGCTGCACTTTGGTCTGGCTGCACATGGATTTTCAATAATGAGTCTGAAATGGACATACAGCACTCAAGATGAGAGGAGTTCAAATGCTTTAATACATTTAAGGACATTTATTAAAGACAGGATGTGTGGTGTgtgataaatgtaaatgtttttttgtaaatatacacgtttctaataaatatttatatgtcGTTTACAATTGAagcttatattttatgcacatacatAAAAACGACACTGAGACACATTGTGTAAGCAagaatttatttaatgcattttgttttcagTGGAATGTAATTATTGATAGTTAATCAACTATTTAGTTTTAGTATTTTAGTGTTTCATTTAAAGAAAGCAGTGCAAATTGAATTATTTCTGGAATGTATGTTTCGGAATTTATGGAGTTTTTCCCTTAGTAATGAAATGCAAAATTGAAGagtaatgttttataaatgcattttttttca
>TCONS_00035630
TTTCCGGTATTTTTACACCATGCCAGGAGGAAACGACTACCTGCGACAGGGAAGCAGTGAGAAAGTATTCCAGTCAGTGCCGTCCACCAGAGAAAAGCAACTGAATTACGAACAGAAAACATGCACACTAATCATAGCTACAGCAACAGGTCCTCGCTATTACCAAAGATAAGGAGTCAAGGTTGTCCACACAATGCTCACGTGAACAACAGAGAGGATCTGCCTAAGATGTGGTTACCAGCAGGCAGCAGGGACGTCCATTGCCCTGTGTGTTTACAGATGGCCACCTATCCTGTTGAGACCAACTGTGGGCATCTATTCTGTGCACCATGTTTGATATCCTACTGGAAACACTGCTCCTGGTTAGATGCCATCAGCTGCCCTCTGTGCAGACAGACGGTGAAAAAGATGTGCCACCTTTTCAGTGAGAACAAGACTGACTGTAAAGAGAGAGAAGTGCTGAGACACGTGAGAGACTATAACAAGCGATACTCTGGCGCACCAAGACAGGTGAAAGATTACCTGTGTGATGCTCCGCTCTTCCTGCTGGTTCTGGTCAGGGGGCTGGGCAATATGGGTGGCTTGGTGTGGCTGTTTCTCCTGCGGGTGGCAGTGTGTGGATTTGGCGCCGCCATGTCGTTGGCGGCTCTTCCCGGGCCGCTGAGCAGTGCGTTGGGCATCCTGGATGATTTCGTTGTGGTCTTTCTTCTGCTTATTTGCATTATTAACATCAATCAACAGATGGGGCCCCAGAGGACCCGAACGCACTCCATCACTCAGGGTGTGCTGACCGACACGTTGTGATAATGCGCACGCTAGCATGTTCAAATGACGCTAATCAACCTTGTTGGCAAAGGTTAACAGTGTTATGACCTGCTGCACTTTGGTCTGGCTGCACATGGATTTTCAATAATGAGTCTGAAATGGACATACAGCACTCAAGATGAGAGGAGTTCAAATGCTTTAATACATTTAAGGACATTTATTAAAGACAGGATGTGTGGTGTgtgataaatgtaaatgtttttttgtaaatatacacgtttctaataaatatttatatgtcGTTTACAATTGAagcttatattttatgcacatacatAAAAACGACACTGAGACACATTGTGTAAGCAagaatttatttaatgcattttgttttcagTGGAATGTAATTATTGATAGTTAATCAACTATTTAGTTTTAGTATTTTAGTGTTTCATTTAAAGAAAGCAGTGCAAATTGAATTATTTCTGGAATGTATGTTTCGGAATTTATGGAGTTTTTCCCTTAGTAATGAAATGCAAAATTGAAGagtaatgttttataaatgcattttttttca

Function

symbol description
si:dkey-183n20.15 Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-160 Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000094265

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035629 False 1238 mRNA 0.42 6 25473056 25481306
TCONS_00035630 True 1342 mRNA 0.43 7 25473056 25486384

Neighbor

gene id symbol gene type direction distance location
XLOC_018082 mrpl19 coding downstream 27810 25440514 ~ 25445246 (-)
XLOC_018081 itsn2a coding downstream 36667 25359064 ~ 25436389 (-)
XLOC_018080 NA coding downstream 161602 25307795 ~ 25311454 (-)
XLOC_018079 epha7 coding downstream 509964 24817118 ~ 24963092 (-)
XLOC_018078 NA coding downstream 740747 24729131 ~ 24732309 (-)
XLOC_018084 cyp2n13 coding upstream 28875 25515259 ~ 25522911 (-)
XLOC_018085 cyp2ad6 coding upstream 39418 25525802 ~ 25533739 (-)
XLOC_018086 cyp2ad2 coding upstream 48285 25534669 ~ 25542183 (-)
XLOC_018087 cyp2ad3 coding upstream 62041 25548425 ~ 25551676 (-)
XLOC_018088 BX322665.2 coding upstream 113721 25600105 ~ 25605285 (-)
XLOC_017928 CU539064.1 misc downstream 15419355 10053405 ~ 10053701 (-)
XLOC_018077 NA non-coding downstream 1018127 24448007 ~ 24454929 (-)
XLOC_018075 NA non-coding downstream 1200593 24234926 ~ 24272463 (-)
XLOC_018074 NA non-coding downstream 1284425 24187977 ~ 24188631 (-)
XLOC_018092 CR352243.2 non-coding upstream 224407 25710791 ~ 25712415 (-)
XLOC_018102 BX470119.1 non-coding upstream 632955 26119339 ~ 26119459 (-)
XLOC_018103 BX470119.2 non-coding upstream 708342 26194726 ~ 26194841 (-)
XLOC_018107 NA non-coding upstream 959519 26445903 ~ 26458381 (-)

Expression


Co-expression Network