Fish Transcriptome and Expression Database

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model fish

XLOC_018102 (BX470119.1)

Basic Information

Item	Value
gene id	XLOC_018102
gene name	BX470119.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007131.7
NCBI id	CM002904.2
chromosome length	55201332
location	26119339 ~ 26119459 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035674
TGAGGTGCTGGCAGCTGTCTTTCTGCAACACTCACATGGTCgaccactgaagctaagcaggtctgtgcccagtcagtacctggatgggagaccacatgggaaagctgggttgctgccgtaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000083421

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00035674	True	121	rRNA	0.55	1	26119339	26119459

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_018101	myct1a	coding	downstream	48390	26062519 ~ 26070949 (-)
XLOC_018100	serac1	coding	downstream	59185	26048304 ~ 26060154 (-)
XLOC_018099	gtf2h5	coding	downstream	71552	26045253 ~ 26047787 (-)
XLOC_018098	si:dkey-12h9.6	coding	downstream	77269	26026518 ~ 26042070 (-)
XLOC_018097	capn3b	coding	downstream	118049	25955118 ~ 26001290 (-)
XLOC_018103	BX470119.2	coding	upstream	75267	26194726 ~ 26194841 (-)
XLOC_018104	esr1	coding	upstream	240297	26359756 ~ 26383375 (-)
XLOC_018105	armt1	coding	upstream	267720	26387179 ~ 26391958 (-)
XLOC_018106	akap12b	coding	upstream	288299	26407758 ~ 26467454 (-)
XLOC_018107	NA	coding	upstream	326444	26445903 ~ 26458381 (-)
XLOC_017928	CU539064.1	misc	downstream	16065638	10053405 ~ 10053701 (-)
XLOC_018092	CR352243.2	non-coding	downstream	406924	25710791 ~ 25712415 (-)
XLOC_018088	BX322665.2	non-coding	downstream	514054	25600105 ~ 25605285 (-)
XLOC_018080	NA	non-coding	downstream	807885	25307795 ~ 25311454 (-)
XLOC_018078	NA	non-coding	downstream	1387030	24729131 ~ 24732309 (-)
XLOC_018077	NA	non-coding	downstream	1664410	24448007 ~ 24454929 (-)
XLOC_018112	NA	non-coding	upstream	511611	26631070 ~ 26708526 (-)
XLOC_018116	BX248515.2	non-coding	upstream	840074	26959533 ~ 26962756 (-)
XLOC_018118	BX248515.3	non-coding	upstream	934636	27054095 ~ 27054220 (-)

Expression

Co-expression Network