XLOC_018176


Basic Information

Item Value
gene id XLOC_018176
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 30965883 ~ 30973173 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036869
GGTCACTCTTCTGGCTTTAATCTACTAGATGGCGTTATGGAAAACTCCACAGGTCCTCTCCTCCTCCTCTGTCTGAGAAATGAAACACATGAGGGACTGACGGTGGGCCTGGCCGTGGCTCAAACGCACCGCAGGTGGAATATTTGTGTTATTGTGGAAGAATTCACACTGCTCTCCAAGGTTGCTCTTCATTCCTGAATAGATGTTTTCAGTGGTGAAACCCTAGAGTGCAAGGAACAGTGTAACAATTACAGGAGTATCTGTACTGCAGATCTTGTGAGCTCATTCACATGGTGCTGATTGCTGAATGAAAGGAGAAACTCACTGTGATGAAGGACAAAGAGCTTCCCTCCTTCATGTTTGTTGGAGTTTGTGACATCAGAGCAAGCACTTTAATAACACTCACACTAATCAGATCCTGCAGTTCAGCGATACCTCTAATACTGCTCAGATGGACGGCAGAGAAAAACAGACGCAGCGAAAAAAGACAGAGAAAACAtctggacagacagacagttgcGTAGCAGAGACATTCATCTTATCCGCATCCTTGCACGGTCGTCAGActtgaattatattttaatgctttCCATTGGGATGCGTCCCCGTGCCAGAATTATCATCATGTGTGCTTCGACACAAGGAGACAAACATTGCAGCCAACAAGATAGAGCTGCGATGGGAGAAGGAGAGGAATGGTGGAGAGACAGAAGAACTGACACAAAACTGAGGTTAGCACAATGCTACCTTACATCTGtagaaaaggtttaaaaaaaaacatccgccATATGCATCTAGATATGGATGAATGATAATAGCATATGGCAAAGAACTCATGCACAATTTATTGTACAATACAATAACCAAATGCATATACGGacgaatatgttttttttttttctcccgtCTCCTGGCTGTGGTGCGGTGtcattaaatttgcaaaaattccATGCAGAAATAACATCTTGAAAGCTCATTAAGTGTCAGTCAAGTCATAAGCTACATGGAAAAATATAAAAGTCGCTCTCATTCACTTAGCCCCACGGCAACAGAACTTCCAAAGTAATATACAGCATAATGGCTTATTAATAACCCTGCATTAAATAATATCCTGAGCTGAATCTTCAGAACGCAGTGTGACTGAACAGGTCTCTTTGAACATGCCAACACCTTCTGAAATATAaatcaaaaaaaaagaagaagagaagGCCAAAAGAGTTCAGtctgcttctcttgattttcacCAGCAGATTATCTCCACCTGTTCAGTTCACAAGCTGCTCTTTATAACTATTCATAGTATGTTTGACATTTGTTAATCCACGCTAATAATTGCTTTTAATTAAAGAGTAATCACAGTAATTGTAAACATTTCAGTCACCTCTGGAGATCTGAACAGCTGTTAGAAATTAAAATTTGACAATTTAAGCCCATTGTGGCACAAACTAAACATGTTTCAGAAGTCTTTGGGAATataatcaccccccccccccttcttttCAGTACATAATGATTGCAGCATGGGTTTTAACACTTTGTCATTTCATGCACATTACAGTAACTTCATCAAGAATGTTTAATTGCAAATATATTCCCCTTGGGCTAGTCCCAGTACGGGACAAATACTTAGTagctaaaaaaatacaaagatCATTTTCACAACACCATGTTCATTCATTTCTTCACCtgcacacgcgtcaagcaactgaagcagagtaAACAAACAGAGGTTTATCAAAAGcattttatggatatttttttatacattggaCATTAGGAAGGAAAAtctatctgcactgtaaaaacaaatccgAAATTTTACGGTTTaattccggcagctggggtgccggaaaaaagtaaaataacaaccgttaaattacagaaatttactgtaacaAAACGCAtatcaaattacagaaatttaatagAAATTTGAATTtagggaaatttctgtaatttgataTCCGTTATTATATCCGTAAAATTAcg
>TCONS_00036870
aaaaaaagaaacttaatagTTTGGAAACGGTTGATGGTCACTCTTCTGGCTTTAATCTACTAGATGGCGTTATGGAAAACTCCACAGGTCCTCTCCTCCTCCTCTGTCTGAGAAATGAAACACATGAGGGACTGACGGTGGGCCTGGCCGTGGCTCAAACGCACCGCAGATCCTGCAGTTCAGCGATACCTCTAATACTGCTCAGATGGACGGCAGAGAAAAACAGACGCAGCGAAAAAAGACAGAGAAAACAtctggacagacagacagttgcGTAGCAGAGACATTCATCTTATCCGCATCCTTGCACGGTCGTCAGActtgaattatattttaatgctttCCATTGGGATGCGTCCCCGTGCCAGAATTATCATCATGTGTGCTTCGACACAAGGAGACAAACATTGCAGCCAACAAGATAGAGCTGCGATGGGAGAAGGAGAGGAATGGTGGAGAGACAGAAGAACTGACACAAAACTGAGGTTAGCACAATGCTACCTTACATCTGtagaaaaggtttaaaaaaaaacatccgccATATGCATCTAGATATGGATGAATGATAATAGCATATGGCAAAGAACTCATGCACAATTTATTGTACAATACAATAACCAAATGCATATACGGacgaatatgttttttttttttctcccgtCTCCTGGCTGTGGTGCGGTGtcattaaatttgcaaaaattccATGCAGAAATAACATCTTGAAAGCTCATTAAGTGTCAGTCAAGTCATAAGCTACATGGAAAAATATAAAAGTCGCTCTCATTCACTTAGCCCCACGGCAACAGAACTTCCAAAGTAATATACAGCATAATGGCTTATTAATAACCCTGCATTAAATAATATCCTGAGCTGAATCTTCAGAACGCAGTGTGACTGAACAGGTCTCTTTGAACATGCCAACACCTTCTGAAATATAaatcaaaaaaaaagaagaagagaagGCCAAAAGAGTTCAGtctgcttctcttgattttcacCAGCAGATTATCTCCACCTGTTCAGTTCACAAGCTGCTCTTTATAACTATTCATAGTATGTTTGACATTTGTTAATCCACGCTAATAATTGCTTTTAATTAAAGAGTAATCACAGTAATTGTAAACATTTCAGTCACCTCTGGAGATCTGAACAGCTGTTAGAAATTAAAATTTGACAATTTAAGCCCATTGTGGCACAAACTAAACATGTTTCAGAAGTCTTTGGGAATataatcaccccccccccccttcttttCAGTACATAATGATTGCAGCATGGGTTTTAACACTTTGTCATTTCATGCACATTACAGTAACTTCATCAAGAATGTTTAATTGCAAATATATTCCCCTTGGGCTAGTCCCAGTACGGGACAAATACTTAGTagctaaaaaaatacaaagatCATTTTCACAACACCATGTTCATTCATTTCTTCACCtgcacacgcgtcaagcaactgaagcagagtaAACAAACAGAGGTTTATCAAAAGcattttatggatatttttttatacattggaCATTAGGAAGGAAAAtctatctgcactgtaaaaacaaatccgAAATTTTACGGTTTaattccggcagctggggtgccggaaaaaagtaaaataacaaccgttaaattacagaaatttactgtaacaAAACGCAtatcaaattacagaaatttaatagAAATTTGAATTtagggaaatttctgtaatttgataTCCGTTATTATATCCGTAAAATTAcg
>TCONS_00036871
cacaaccccacccctaaccccaaccgtcattgggtgatgagcaaatcgtactaaattgtacgaattagatacgaattagccactaaattaaaacgTTACGAATTTCCGTGAGATTGGTTGGTATACAAAATAGTCgtgcatatacatatatgtattttGTGCAAATGCTGGCATTTCCAATATTTGCAACAGTGCAAAAGATTCATAAATATAGGTGGATGGAGCCAGATATTGGCTACTGATTCGTAACaatatcttctttattgttcaacagaaaaaaaagaaacttaatagTTTGGAAACGGTTGATGGTCACTCTTCTGGCTTTAATCTACTAGATCCTGCAGTTCAGCGATACCTCTAATACTGCTCAGATGGACGGCAGAGAAAAACAGACGCAGCGAAAAAAGACAGAGAAAACAtctggacagacagacagttgcGTAGCAGAGACATTCATCTTATCCGCATCCTTGCACGGTCGTCAGActtgaattatattttaatgctttCCATTGGGATGCGTCCCCGTGCCAGAATTATCATCATGTGTGCTTCGACACAAGGAGACAAACATTGCAGCCAACAAGATAGAGCTGCGATGGGAGAAGGAGAGGAATGGTGGAGAGACAGAAGAACTGACACAAAACTGAGGTTAGCACAATGCTACCTTACATCTGtagaaaaggtttaaaaaaaaacatccgccATATGCATCTAGATATGGATGAATGATAATAGCATATGGCAAAGAACTCATGCACAATTTATTGTACAATACAATAACCAAATGCATATACGGacgaatatgttttttttttttctcccgtCTCCTGGCTGTGGTGCGGTGtcattaaatttgcaaaaattccATGCAGAAATAACATCTTGAAAGCTCATTAAGTGTCAGTCAAGTCATAAGCTACATGGAAAAATATAAAAGTCGCTCTCATTCACTTAGCCCCACGGCAACAGAACTTCCAAAGTAATATACAGCATAATGGCTTATTAATAACCCTGCATTAAATAATATCCTGAGCTGAATCTTCAGAACGCAGTGTGACTGAACAGGTCTCTTTGAACATGCCAACACCTTCTGAAATATAaatcaaaaaaaaagaagaagagaagGCCAAAAGAGTTCAGtctgcttctcttgattttcacCAGCAGATTATCTCCACCTGTTCAGTTCACAAGCTGCTCTTTATAACTATTCATAGTATGTTTGACATTTGTTAATCCACGCTAATAATTGCTTTTAATTAAAGAGTAATCACAGTAATTGTAAACATTTCAGTCACCTCTGGAGATCTGAACAGCTGTTAGAAATTAAAATTTGACAATTTAAGCCCATTGTGGCACAAACTAAACATGTTTCAGAAGTCTTTGGGAATataatcaccccccccccccttcttttCAGTACATAATGATTGCAGCATGGGTTTTAACACTTTGTCATTTCATGCACATTACAGTAACTTCATCAAGAATGTTTAATTGCAAATATATTCCCCTTGGGCTAGTCCCAGTACGGGACAAATACTTAGTagctaaaaaaatacaaagatCATTTTCACAACACCATGTTCATTCATTTCTTCACCtgcacacgcgtcaagcaactgaagcagagtaAACAAACAGAGGTTTATCAAAAGcattttatggatatttttttatacattggaCATTAGGAAGGAAAAtctatctgcactgtaaaaacaaatccgAAATTTTACGGTTTaattccggcagctggggtgccggaaaaaagtaaaataacaaccgttaaattacagaaatttactgtaacaAAACGCAtatcaaattacagaaatttaatagAAATTTGAATTtagggaaatttctgtaatttgataTCCGTTATTATATCCGTAAAATTAcg
>TCONS_00036872
TAGGAATTGCTATGGGGAGATATATTGCTGACTAAGAActcatctatggtgccaatttggtttggtcaattcacttgtgttgcatgtctttggacggtgcatggaggaaaccggggaacctagGGGAACCTATGTGAGCACGGGTagaacatgtaaacactgcacagaaacgtcgactggcccagtaaggacttgaaccagtgacatgcTTGCTAACCACTTGGCTGCCATGCCATCGTATTTAGGAAAAGAGAGGAGGAGTGAGGGTGGAAGGGGGATACCTCAAGACGATGAtaactgagaaaaaaaagaaacttaatagTTTGGAAACGGTTGATGGTCACTCTTCTGGCTTTAATCTACTAGATCCTGCAGTTCAGCGATACCTCTAATACTGCTCAGATGGACGGCAGAGAAAAACAGACGCAGCGAAAAAAGACAGAGAAAACAtctggacagacagacagttgcGTAGCAGAGACATTCATCTTATCCGCATCCTTGCACGGTCGTCAGActtgaattatattttaatgctttCCATTGGGATGCGTCCCCGTGCCAGAATTATCATCATGTGTGCTTCGACACAAGGAGACAAACATTGCAGCCAACAAGATAGAGCTGCGATGGGAGAAGGAGAGGAATGGTGGAGAGACAGAAGAACTGACACAAAACTGAGGTTAGCACAATGCTACCTTACATCTGtagaaaaggtttaaaaaaaaacatccgccATATGCATCTAGATATGGATGAATGATAATAGCATATGGCAAAGAACTCATGCACAATTTATTGTACAATACAATAACCAAATGCATATACGGacgaatatgttttttttttttctcccgtCTCCTGGCTGTGGTGCGGTGtcattaaatttgcaaaaattccATGCAGAAATAACATCTTGAAAGCTCATTAAGTGTCAGTCAAGTCATAAGCTACATGGAAAAATATAAAAGTCGCTCTCATTCACTTAGCCCCACGGCAACAGAACTTCCAAAGTAATATACAGCATAATGGCTTATTAATAACCCTGCATTAAATAATATCCTGAGCTGAATCTTCAGAACGCAGTGTGACTGAACAGGTCTCTTTGAACATGCCAACACCTTCTGAAATATAaatcaaaaaaaaagaagaagagaagGCCAAAAGAGTTCAGtctgcttctcttgattttcacCAGCAGATTATCTCCACCTGTTCAGTTCACAAGCTGCTCTTTATAACTATTCATAGTATGTTTGACATTTGTTAATCCACGCTAATAATTGCTTTTAATTAAAGAGTAATCACAGTAATTGTAAACATTTCAGTCACCTCTGGAGATCTGAACAGCTGTTAGAAATTAAAATTTGACAATTTAAGCCCATTGTGGCACAAACTAAACATGTTTCAGAAGTCTTTGGGAATataatcaccccccccccccttcttttCAGTACATAATGATTGCAGCATGGGTTTTAACACTTTGTCATTTCATGCACATTACAGTAACTTCATCAAGAATGTTTAATTGCAAATATATTCCCCTTGGGCTAGTCCCAGTACGGGACAAATACTTAGTagctaaaaaaatacaaagatCATTTTCACAACACCATGTTCATTCATTTCTTCACCtgcacacgcgtcaagcaactgaagcagagtaAACAAACAGAGGTTTATCAAAAGcattttatggatatttttttatacattggaCATTAGGAAGGAAAAtctatctgcactgtaaaaacaaatccgAAATTTTACGGTTTaattccggcagctggggtgccggaaaaaagtaaaataacaaccgttaaattacagaaatttactgtaacaAAACGCAtatcaaattacagaaatttaatagAAATTTGAATTtagggaaatttctgtaatttgataTCCGTTATTATATCCGTAAAATTAcg
>TCONS_00036873
GCCCCCTCCCATCATCCCCCCAACCCTGACTGGTTCTTGGTGCCCCCTGTGCCGCAGCCCGTTAATAAAATCCTAGAATCACCACTGATGTATACATGAAAGTTAAGGGGAAAATGAAATTAGAGATTGAACGGTACCAGATCCAAGCCTGGACTATCATAAGATCCTGCAGTTCAGCGATACCTCTAATACTGCTCAGATGGACGGCAGAGAAAAACAGACGCAGCGAAAAAAGACAGAGAAAACAtctggacagacagacagttgcGTAGCAGAGACATTCATCTTATCCGCATCCTTGCACGGTCGTCAGActtgaattatattttaatgctttCCATTGGGATGCGTCCCCGTGCCAGAATTATCATCATGTGTGCTTCGACACAAGGAGACAAACATTGCAGCCAACAAGATAGAGCTGCGATGGGAGAAGGAGAGGAATGGTGGAGAGACAGAAGAACTGACACAAAACTGAGGTTAGCACAATGCTACCTTACATCTGtagaaaaggtttaaaaaaaaacatccgccATATGCATCTAGATATGGATGAATGATAATAGCATATGGCAAAGAACTCATGCACAATTTATTGTACAATACAATAACCAAATGCATATACGGacgaatatgttttttttttttctcccgtCTCCTGGCTGTGGTGCGGTGtcattaaatttgcaaaaattccATGCAGAAATAACATCTTGAAAGCTCATTAAGTGTCAGTCAAGTCATAAGCTACATGGAAAAATATAAAAGTCGCTCTCATTCACTTAGCCCCACGGCAACAGAACTTCCAAAGTAATATACAGCATAATGGCTTATTAATAACCCTGCATTAAATAATATCCTGAGCTGAATCTTCAGAACGCAGTGTGACTGAACAGGTCTCTTTGAACATGCCAACACCTTCTGAAATATAaatcaaaaaaaaagaagaagagaagGCCAAAAGAGTTCAGtctgcttctcttgattttcacCAGCAGATTATCTCCACCTGTTCAGTTCACAAGCTGCTCTTTATAACTATTCATAGTATGTTTGACATTTGTTAATCCACGCTAATAATTGCTTTTAATTAAAGAGTAATCACAGTAATTGTAAACATTTCAGTCACCTCTGGAGATCTGAACAGCTGTTAGAAATTAAAATTTGACAATTTAAGCCCATTGTGGCACAAACTAAACATGTTTCAGAAGTCTTTGGGAATataatcaccccccccccccttcttttCAGTACATAATGATTGCAGCATGGGTTTTAACACTTTGTCATTTCATGCACATTACAGTAACTTCATCAAGAATGTTTAATTGCAAATATATTCCCCTTGGGCTAGTCCCAGTACGGGACAAATACTTAGTagctaaaaaaatacaaagatCATTTTCACAACACCATGTTCATTCATTTCTTCACCtgcacacgcgtcaagcaactgaagcagagtaAACAAACAGAGGTTTATCAAAAGcattttatggatatttttttatacattggaCATTAGGAAGGAAAAtctatctgcactgtaaaaacaaatccgAAATTTTACGGTTTaattccggcagctggggtgccggaaaaaagtaaaataacaaccgttaaattacagaaatttactgtaacaAAACGCAtatcaaattacagaaatttaatagAAATTTGAATTtagggaaatttctgtaatttgataTCCGTTATTATATCCGTAAAATTAcg
>TCONS_00036484
GGTTGGTATACAAAATAGTCgtgcatatacatatatgtattttGTGCAAATGCTGGCATTTCCAATATTTGCAACAGTGCAAAAGATTCATAAATATAGGTGGATGGAGCCAGATATTGGCTACTGATTCGTAACaatatcttctttattgttcaacagaaaaaaaagaaacttaatagTTTGGAAACGGTTGATGGTCACTCTTCTGGCTTTAATCTACTAGGTCAgcttttcttctctttttctcttttgaTGCATGATGTCTCTGTATGGTAAAATGACAGGCAGTTGTAGAACACAGAGCTCCTCCTGGTTCCTCAGATGGCGTTATGGAAAACTCCACAGGTCCTCTCCTCCTCCTCTGTCTGAGAAATGAAACACATGAGGGACTGACGGTGGGCCTGGCCGTGGCTCAAACGCACCGCAGATCCTGCAGTTCAGCGATACCTCTAATACTGCTCAGATGGACGGCAGAGAAAAACAGACGCAGCGAAAAAAGACAGAGAAAACAtctggacagacagacagttgcGTAGCAGAGACATTCATCTTATCCGCATCCTTGCACGGTCGTCAGActtgaattatattttaatgctttCCATTGGGATGCGTCCCCGTGCCAGAATTATCATCATGTGTGCTTCGACACAAGGAGACAAACATTGCAGCCAACAAGATAGAGCTGCGATGGGAGAAGGAGAGGAATGGTGGAGAGACAGAAGAACTGACACAAAACTGAGGTTAGCACAATGCTACCTTACATCTGtagaaaaggtttaaaaaaaaacatccgccATATGCATCTAGATATGGATGAATGATAATAGCATATGGCAAAGAACTCATGCACAATTTATTGTACAATACAATAACCAAATGCATATACGGacgaatatgttttttttttttctcccgtCTCCTGGCTGTGGTGCGGTG

Function

GO:

id name namespace
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0032926 negative regulation of activin receptor signaling pathway biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005840 ribosome cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036869 False 1989 lncRNA 0.39 3 30965883 30970932
TCONS_00036870 False 1743 lncRNA 0.38 3 30965883 30970967
TCONS_00036871 False 1912 lncRNA 0.37 2 30965883 30971242
TCONS_00036872 False 1940 lncRNA 0.39 3 30965883 30972358
TCONS_00036873 False 1737 lncRNA 0.38 2 30965883 30973173
TCONS_00036484 True 939 lncRNA 0.42 2 30966945 30971127

Neighbor

gene id symbol gene type direction distance location
XLOC_018175 wtap coding downstream 27637 30931414 ~ 30938246 (-)
XLOC_018174 acat2 coding downstream 34737 30922595 ~ 30931146 (-)
XLOC_018173 kif25 coding downstream 45527 30902138 ~ 30920356 (-)
XLOC_018172 hebp2 coding downstream 64849 30894093 ~ 30901034 (-)
XLOC_018171 NA coding downstream 159409 30800868 ~ 30806474 (-)
XLOC_018177 NA coding upstream 29015 31002188 ~ 31067306 (-)
XLOC_018178 AL929014.1 coding upstream 71902 31045075 ~ 31045205 (-)
XLOC_018179 fam166c coding upstream 99719 31072892 ~ 31075972 (-)
XLOC_018180 hpcal1 coding upstream 259750 31232923 ~ 31308805 (-)
XLOC_018181 usta coding upstream 336191 31309364 ~ 31427390 (-)
XLOC_017928 CU539064.1 misc downstream 20912182 10053405 ~ 10053701 (-)
XLOC_018170 NA non-coding downstream 499845 30465502 ~ 30466038 (-)
XLOC_018169 BX276180.3 non-coding downstream 590977 30374686 ~ 30374906 (-)
XLOC_018168 BX276180.1 non-coding downstream 591799 30373865 ~ 30374084 (-)
XLOC_018167 BX276180.2 non-coding downstream 592456 30373207 ~ 30373427 (-)
XLOC_018183 NA non-coding upstream 584695 31557868 ~ 31744506 (-)
XLOC_018188 NA non-coding upstream 1163852 32137025 ~ 32139068 (-)
XLOC_018195 CU138515.2 non-coding upstream 1487102 32460275 ~ 32460391 (-)

Expression


Co-expression Network