XLOC_018180 (hpcal1)


Basic Information

Item Value
gene id XLOC_018180
gene name hpcal1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 31232923 ~ 31308805 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035826
GAGGTTTCAAGTGCGCCTTTGAGATGTTATGGAGTCCGTGGAATATTATTTCTTCAATTTATAACTTTTCCACTCCTTTTTATTAAAACAGCATTCCAACTTTAAGACTACAAAATCGAGCTGTACGTCTACGCATAGCGTATTAgcacttttgtttgtttatagaaGCTTCTGTTAGTTTTTTCACACAGCGAAAATGCTGAAAGTTTTGTGAGGACACTCCTTCAAGACACGACGAAGCAAGGCTACAGTCGACAAATTGAAGTGTAAAGCAGCTCTCTATTTTTCTTTAGGGAAGCATCAAGGAACTGGGAAGTGTCCAATAGAGCCTTTCATCATGGGTAAACAGAACAGTAAGTTGCGACCCGAGGTGCTGAATGACCTGCGGGAGAACACAGAGTTCACAGACCACGAGCTGCAGGAGTGGTACCGCGGTTTTCTGAAGGACTGTCCGTCCGGCCATCTGACGGTGGAGGAGTTCAAGAAGATCTATGCCAATTTCTTCCCCTACGGTGATGCTTCCAAGTTTGCAGAGCACGTCTTTCGCACCTTCGACACCAACAGTGATGCCACCATTGACTTTCGGGAGTTCATCATCGCCCTAAGCGTGACATCCCGTGGAGGCCTGGAGCAGAAACTGCGCTGGGCCTTCAGCATGTACGATCTGGACGGCAACGGATACATCAGCCGAGCCGAAATGCTGGAGATTGTACAGGCGATTTATAAAATGGTGTCATCTGTGATGAAGATGCCGGAGGATGAGTCAACGCCTGAGAAACGCACAGATAAGATATTCCGACAGATGGACACAGACAACGATGGTAGACTGTCTCTGGAGGAATTCATCAAAGGTGCCAAGAGTGACCCGTCTATTGTCAGGCTCCTGCAGTCTGACCAGAGCAGCTCTCGACAGTTATAAACGCCGCTGAAAGAACACCTAACATGCacactaaaaaaacaaaatcattatagAAAGGTTGTTACTGCCGTTATCAATGATACTTTTCAAGAACTTTTCTGCTTCAACAGTTTCCTTTGATGATTGGTGATGAGCTGGTCGATGGGTTTATTTTGACGTAGTGCTGTTTGGATTGATATTGTTGCGTTCTCTGAATCTGGGCTGGGGTGGTCGTTTTATTCCATTTGAAGAAATAGactattatcagacattcatGTTATAAAAAGTACTCTTCTGGTTGCATCCATTCAGAAGGAAGCTGTGGAAACTGTTTGCTGTCTTGAAGTGCTGAATGAAAATATGTatgttttaaattgtttgcattcCACTCAAAATGGTAAATGACTTGGTGAGTACCCCGAGCACATTCCCTGAATGACCATTAGGCCAGAACATGAAGTTCTGCTTGTAAATGTTTCTTGCTTCGCATTCATTCCGAAAATAAGTGGGATATAATACGAGAGCACTATTTACAGTACATTCCCTTGACAGTTTGTAAATATGTTGATCAGTATTTGCATGAGATGTTTATTGATGCATCAGGTGGTTTAGCTGCGTTCAGAGCCATCTGCTGTCCTGCCAATGATGATCGACTAGGAAAATCTGTGTACTTTATTTTCAAACGTGTGTTTTTACAGATGTGAGAGAACATGCCAACAGTTTGCGGTCAGTCaattggatttattttatttgttttttttaaagatgcataCTTTTTATCTCGATTTCTAATGAATCCTGTTCTTTTTAGTTTTGTATTTAATGAGGAATATAGAGGTAAACATTggttccacaaaaatattaaagctGCAGTAGGCAATTGTCTTCAgaga
>TCONS_00035827
GAAGTGTCCAATAGAGCCTTTCATCATGGGTAAACAGAACAGTAAGTTGCGACCCGAGGTGCTGAATGACCTGCGGGAGAACACAGAGTTCACAGACCACGAGCTGCAGGAGTGGTACCGCGGTTTTCTGAAGGACTGTCCGTCCGGCCATCTGACGGTGGAGGAGTTCAAGAAGATCTATGCCAATTTCTTCCCCTACGGTGATGCTTCCAAGTTTGCAGAGCACGTCTTTCGCACCTTCGACACCAACAGTGATGCCACCATTGACTTTCGGGAGTTCATCATCGCCCTAAGCGTGACATCCCGTGGAGGCCTGGAGCAGAAACTGCGCTGGGCCTTCAGCATGTACGATCTGGACGGCAACGGATACATCAGCCGAGCCGAAATGCTGGAGATTGTACAGGCGATTTATAAAATGGTGTCATCTGTGATGAAGATGCCGGAGGATGAGTCAACGCCTGAGAAACGCACAGATAAGATATTCCGACAGATGGACACAGACAACGATGGTAGACTGTCTCTGGAGGAATTCATCAAAGGTGCCAAGAGTGACCCGTCTATTGTCAGGCTCCTGCAGTCTGACCAGAGCAGCTCTCGACAGTTATAAACGCCGCTGAAAGAACACCTAACATGCacactaaaaaaacaaaatcattatagAAAGGTTGTTACTGCCGTTATCAATGATACTTTTCAAGAACTTTTCTGCTTCAACAGTTTCCTTTGATGATTGGTGATGAGCTGGTCGATGGGTTTATTTTGACGTAGTGCTGTTTGGATTGATATTGTTGCGTTCTCTGAATCTGGGCTGGGGTGGTCGTTTTATTCCATTTGAAGAAATAGactattatcagacattcatGTTATAAAAAGTACTCTTCTGGTTGCATCCATTCAGAAGGAAGCTGTGGAAACTGTTTGCTGTCTTGAAGTGCTGAATGAAAATATGTatgttttaaattgtttgcattcCACTCAAAATGGTAAATGACTTGGTGAGTACCCCGAGCACATTCCCTGAATGACCATTAGGCCAGAACATGAAGTTCTGCTTGTAAATGTTTCTTGCTTCGCATTCATTCCGAAAATAAGTGGGATATAATACGAGAGCACTATTTACAGTACATTCCCTTGACAGTTTGTAAATATGTTGATCAGTATTTGCATGAGATGTTTATTGATGCATCAGGTGGTTTAGCTGCGTTCAGAGCCATCTGCTGTCCTGCCAATGATGATCGACTAGGAAAATCTGTGTACTTTATTTTCAAACGTGTGTTTTTACAGATGTGAGAGAACATGCCAACAGTTTGCGGTCAGTCaattggatttattttatttgttttttttaaagatgcataCTTTTTATCTCGATTTCTAATGAATCCTGTTCTTTTTAGTTTTGTATTTAATGAGGAATATAGAGGTAAACATTggttccacaaaaatattaaagctGCAGTAGGCAATTGTCTTCAg
>TCONS_00035828
AGCTAGcgtgtaaacaaacaaaatacttgCACTGTACCGTTGTTTTTCTTAATTATTAAGCACACTTTTTACACAAGTAGATTTATTGACATGATTAAGAACTGTTCATTCGTGATTTAAAACGATGGGTCCATGTGAGGACTCAAAATCTTCAAAATGTGGTCTGTGCTTTTTTTCTCCCCCAAATTCTGTCACTTTGAACGAACTTTCAAGGATTCAGTCTAAGAGAAGtAAGAACTGGCTGTACACATCTTGTCCTGGGCCTCCTCCCCTCTGTCACAGCGAATGAGAAACGCCTGCCTTACTCCTGTTAACCTGGAAAATATTTCTCACCTTTTCCATGAgagtctctttttttttcaccAGGGAATTAAAGGAAGCATCAAGGAACTGGGAAGTGTCCAATAGAGCCTTTCATCATGGGTAAACAGAACAGTAAGTTGCGACCCGAGGTGCTGAATGACCTGCGGGAGAACACAGAGTTCACAGACCACGAGCTGCAGGAGTGGTACCGCGGTTTTCTGAAGGACTGTCCGTCCGGCCATCTGACGGTGGAGGAGTTCAAGAAGATCTATGCCAATTTCTTCCCCTACGGTGATGCTTCCAAGTTTGCAGAGCACGTCTTTCGCACCTTCGAC

Function

symbol description
hpcal1 Predicted to enable calcium ion binding activity. Orthologous to human HPCAL1 (hippocalcin like 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040426-1242 Predicted to enable calcium ion binding activity. Orthologous to human HPCAL1 (hippocalcin like 1).

Ensembl:

ensembl_id ENSDARG00000022763

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035826 False 1791 mRNA 0.42 4 31232923 31252809
TCONS_00035827 False 1476 mRNA 0.43 3 31232926 31238313
TCONS_00035828 True 638 mRNA 0.44 3 31238070 31308805

Neighbor

gene id symbol gene type direction distance location
XLOC_018179 fam166c coding downstream 156951 31072892 ~ 31075972 (-)
XLOC_018177 NA coding downstream 165617 31002188 ~ 31067306 (-)
XLOC_018178 AL929014.1 coding downstream 187718 31045075 ~ 31045205 (-)
XLOC_018176 NA coding downstream 259750 30965883 ~ 30973173 (-)
XLOC_018175 wtap coding downstream 294677 30931414 ~ 30938246 (-)
XLOC_018181 usta coding upstream 559 31309364 ~ 31427390 (-)
XLOC_018182 sash1a coding upstream 120014 31428819 ~ 31743817 (-)
XLOC_018183 NA coding upstream 249063 31557868 ~ 31744506 (-)
XLOC_018184 stxbp5a coding upstream 437144 31745949 ~ 31905968 (-)
XLOC_018185 adgb coding upstream 620572 31929377 ~ 32007209 (-)
XLOC_017928 CU539064.1 misc downstream 21179222 10053405 ~ 10053701 (-)
XLOC_018171 NA non-coding downstream 426449 30800868 ~ 30806474 (-)
XLOC_018170 NA non-coding downstream 766885 30465502 ~ 30466038 (-)
XLOC_018188 NA non-coding upstream 828220 32137025 ~ 32139068 (-)
XLOC_018195 CU138515.2 non-coding upstream 1151470 32460275 ~ 32460391 (-)
XLOC_018196 CR354385.1 non-coding upstream 1341038 32649843 ~ 32649959 (-)
XLOC_018200 NA non-coding upstream 1921358 33230163 ~ 33293844 (-)

Expression


Co-expression Network