XLOC_018181 (usta)


Basic Information

Item Value
gene id XLOC_018181
gene name usta
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 31309364 ~ 31427390 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035829
TCACGCGCATCGATCCGTGAAGGGGCTTTTGGTTGGTGTTTAAATGTTGACCGAAAAGTTTTTATCTGAAGAGGCGGATGGGTGACGACCATTCTCTGCGCTTCCATGTGAGGAGACGATGAAGAATTACAGCAGCAGCTCCCGTCTAAACAATCACAGCGCGAGTCACGGCACAGATCGTAACAGCAGGAGAGGATTCTGGTTGTCGGCTCTCGGGCTTCGCTTCTCCCTGCGTGATTATGCTTTCTGCATGGCCACACTGCTGCTCTTCTGCCTCGGCTCGCTCTTTTACCAGCTGAACGGAGGACCCCCTAAAGTTCTGCTGGAGATCAGGCAGTATCTCGGAGAATCCACTTTTGTTGACGACCACGGGCCTCCTACACCGAGgGAACTGCCATTCCCAAGTCAGGTGATCTACAACAGGGTTGGCAAGTGTGGAAGTCGGACCGTGGTCCTGCTGCTAAGGATTCTGGCAGAAAAGCACCAGTTTAACCTGGTGTCCTCTGACATCCATAACAAAACCAGACTTACAAAGCATGAGCAGgtggaTTTGATCACAAACATTAGCAATATCCCGCAACCTTTTCTGTACACCAGACATGTTCACTTTCTCAATTTCACCAGGTTCAGGATAGAACAGCCTGTCTACATAAACATCATCAGGGATCCCATTAACCGTTTTCTCTCGAATTACTTTTTCCGTCGTTTCGGGGACTGGAGAGGAGAGCAAAATCACCTGATCCGCACACCCCAGATGAAGGATGATGAGAGATATCTGGACATTAACGTGTGTATCATGGAGAACTACCCAGAGTGCTCAAACCCTCGCCTCTTCTACATCGTTCCATACTTTTGTGGACAACACCCTCAGTGCAGGGAGCCGGGTATGTGGGCAGTGGAGAGGGCCAAACAAAATGTTATAGAGAACTTTCTACTTGTGGGGAttctggaggagctggaggatgtATTACTCTTGCTGGAGAGACTTCTACCTCACTACTTTAGTGATGTCCTAACCATCTACAAGAGTCCAGCATTCTGGAAGATGGGGAACCTTACCGGAACAGTGAAGAAGCACATGCCCACTATAGAGGCTCTGCAGGTACTTTACCAAAGGATGAAGTACGAGTATGACTTTTACAACTTTATTCGTGACCAGTTCCATCTGACCAAGAAGAAGATTGGCCTCAAGTCCTCCTCCCAGAACTCTGCTCACGAACCTGACTTCCTCCGTGAACTTGCCCTCAGGACTCATGAGCCtttggaagaggaggaggaggaagaggaggaggaagatgacATTGGCCAAGAAGATGCCAATATATGGTTGGTTCAGCCTTGAGTCATAGCTGTGGTTTAAGCACGACAGATAACTCATAAGCTTGGTGTCTACATCCGACAAGGAGGTAGAGTCAACATTCCCTAGTCAAAACTGGGTGTGTAATAGTAATCCCTGTGTTTTTAACGGGACGGCCCTTCAAGACACTGTTGTGAGAAGCGCTGAGTAGTTATTTAAGGAACAGACGGTTACATGTTTATGAAATTGAGCAGTTGGTTATGGTCATTTCCCAACTGGAATTACAGGGATGTTGCTGGATTGTCAAAATGAAGAGATGAATTAGCAGATCGACATGCTGTGGAAGGCTAATTTTTAGGCCTGGAAGCTGAGTGACCTTGGACTCAAATCAGCCCATGCTTTCATGCAGACACATTCAGACCACACAATGGAGACAAGTTAGGATCATAGCAAAGTGCCAAACCTTCAAAGTGCCAAGGTTTAAACCTAGAAGATGAAGCTGTAATCACAAGTCAGATCTAATCAGTTTATTGTTACTCGCTTCCTCCTCTGGTTCCAGAAACCTGCTGCGATACTGTGCCAGAAGTTCAGTGCTAAGaccttttttatattaaaaatgaaaggtGTTGTACAATGAATGTCTGCAAGATGCAGCACAGAATTGAGTGGATgttaaagttttctttttttgcctGGTCTGTCATTGCATGCAATTGGCCATTGAGTTCCCATTTCCTACATCAAGTGCTAAGAGGACTTAAAATTATAGTTCACCCTGAAATGAAAATGGAAACTGTGTTTTTAGAGCAGCAATGCAATTTTGTTCAATTGATCTGCAGTGTATATTGCAGAACTATTAGGGAAGAGTCTATCACCCCGTAACTGTTTGCCAGTGGTTAATGTTCTGGCAGAATCATGatataaaacaaagtaaacaagGCCATAATATTAAAGTGAATATGTTTTTAGAGGTGAATGAACGTGATAAAGGAGGCTGTCAAACAGCACATTGGAAATCAAGTTTGACAACAGGACATCAAAACAATGAATGTGAACATTTTGGggagttttattttgtaaattacttttttttctaaatgatcaacttcACAGATCAACACTTATCCAGAAGTAAGGAAGGTCCGTTTGTATTCATTACTGGTCATGAAAACCTTATGTTAAACTATTCTGGTAAAGTTAAATAATTGATAAAAGACTACATAGTTGTTATAATAGCTACAAGCTCTTGCAGAATTTAACACTTCCCATTTAAACTTGCCagtacttgtttgtttgtttgtttgtttgtttgtttgtttgttgtgttcagtgtgaatttttatattgtttaatttattgtataCTGTTAATTTTGATGATTGCATTCCATGTTCAAATCTCAGGAAACCAAAAAAAAGAGcagatacatttttgtttttgccatCTAACAGCTGgaaaatattaattcatatgATGTCTGCTTATTACTAAAGGTCAGCTGGAGTGACCAATCTTTGGATACCAAATCTAAATGAAATGGCTAACATTTTACAAATTAACTGCACCTTTAATGGGAAAGCTctcaaaataaaagcattttaacagca
>TCONS_00036875
GAGAATCCACTTTTGTTGACGACCACGGGCCTCCTACACCGAGgGAACTGCCATTCCCAAGTCAGGTGATCTACAACAGGGTTGGCAAGTGTGGAAGTCGGACCGTGGTCCTGCTGCTAAGGATTCTGGCAGAAAAGCACCAGTTTAACCTGGTGTCCTCTGACATCCATAACAAAACCAGACTTACAAAGCATGAGCAGgtggaTTTGATCACAAACATTAGCAATATCCCGCAACCTTTTCTGTACACCAGACATGTTCACTTTCTCAATTTCACCAGGTTCAGGATAGAACAGCCTGTCTACATAAACATCATCAGGGATCCCATTAACCGTTTTCTCTCGAATTACTTTTTCCGTCGTTTCGGGGACTGGAGAGGAGAGCAAAATCACCTGATCCGCACACCCCAGATGAAGGATGATGAGAGATATCTGGACATTAACGTGTGTATCATGGAGAACTACCCAGAGTGCTCAAACCCTCGCCTCTTCTACATCGTTCCATACTTTTGTGGACAACACCCTCAGTGCAGGGAGCCGGGTATGTGGGCAGTGGAGAGGGCCAAACAAAATGTTATAGAGAACTTTCTACTTGTGGGGAttctggaggagctggaggatgtATTACTCTTGCTGGAGAGACTTCTACCTCACTACTTTAGTGATGTCCTAACCATCTACAAGAGTCCAGCATTCTGGAAGATGGGGAACCTTACCGGAACAGTGAAGAAGCACATGCCCACTATAGAGGCTCTGCAGGTACTTTACCAAAGGATGAAGTACGAGTATGACTTTTACAACTTTATTCGTGACCAGTTCCATCTGACCAAGAAGAAGATTGGCCTCAAGTCCTCCTCCCAGAACTCTGCTCACGAACCTGACTTCCTCCGTGAACTTGCCCTCAGGACTCATGAGCCtttggaagaggaggaggaggaagaggaggaggaagatgacATTGGCCAAGAAGATGCCAATATATGGTTGGTTCAGCCTTGA

Function

symbol description
usta Predicted to enable sulfotransferase activity. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in head. Orthologous to human UST (uronyl 2-sulfotransferase).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function
GO:0016740 transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-163 Predicted to enable sulfotransferase activity. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in head. Orthologous to human UST (uronyl 2-sulfotransferase).

Ensembl:

ensembl_id ENSDARG00000006044

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035829 False 2904 mRNA 0.42 8 31309364 31427390
TCONS_00036875 True 998 lncRNA 0.48 7 31310926 31346581

Neighbor

gene id symbol gene type direction distance location
XLOC_018180 hpcal1 coding downstream 559 31232923 ~ 31308805 (-)
XLOC_018179 fam166c coding downstream 233392 31072892 ~ 31075972 (-)
XLOC_018177 NA coding downstream 242058 31002188 ~ 31067306 (-)
XLOC_018178 AL929014.1 coding downstream 264159 31045075 ~ 31045205 (-)
XLOC_018176 NA coding downstream 336191 30965883 ~ 30973173 (-)
XLOC_018182 sash1a coding upstream 1429 31428819 ~ 31743817 (-)
XLOC_018183 NA coding upstream 130478 31557868 ~ 31744506 (-)
XLOC_018184 stxbp5a coding upstream 318559 31745949 ~ 31905968 (-)
XLOC_018185 adgb coding upstream 501987 31929377 ~ 32007209 (-)
XLOC_018186 rab32a coding upstream 581881 32009271 ~ 32045182 (-)
XLOC_017928 CU539064.1 misc downstream 21255663 10053405 ~ 10053701 (-)
XLOC_018171 NA non-coding downstream 502890 30800868 ~ 30806474 (-)
XLOC_018170 NA non-coding downstream 843326 30465502 ~ 30466038 (-)
XLOC_018188 NA non-coding upstream 709635 32137025 ~ 32139068 (-)
XLOC_018195 CU138515.2 non-coding upstream 1032885 32460275 ~ 32460391 (-)
XLOC_018196 CR354385.1 non-coding upstream 1222453 32649843 ~ 32649959 (-)
XLOC_018200 NA non-coding upstream 1802773 33230163 ~ 33293844 (-)

Expression


Co-expression Network