XLOC_018183


Basic Information

Item Value
gene id XLOC_018183
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 31557868 ~ 31744506 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036876
CTGAAATGCACTTCCAATAGTAGAGCAGCAGAGAGGAGACACGCGCTCCTGCGCAACCCGCTCACAGACCGCAGCCTGCCGTTACCTCCACACCGCCGCTCGCGCACCTTTACCTCCCGCGGTACTGACAAAAATAAAAGTCACAAAGTTCTGGCTTGATGGATTAATACTATACGGAAATAAATCCTTCCTCTTATTTTTTTTACGAAACGCGATGCCAGGTTTTAATTTACCTCTAACTCTGAGAAACTGACAGTTCTGACAGCGCGTGCCCAGATTCAAACGCGTCTGCTCGCCAACCGTCGCCTCACTGAGGAAAACCGATATTTGGCTTCGCCAGCTCGATTACGCTGCTCGGCAAACAGTGGCAAGAAGTCCGAAACCACATGTGCTCGTCTCCTAACGCGGTTTTATTTGTCTTCTGCAGGGAAAAGAGTTGGCTTTAAGCCGTACTGACAGACACAAGGGAAGGACGCTTCCATGAAAACGCTGGAGAAAAAGACCACTGGAAATACACGCGGTATGTGTGAAGCTTACATTTTCCTTGTTACTTGTTTG

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process
GO:0071546 pi-body cellular_component
GO:0034584 piRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036876 True 558 lncRNA 0.49 2 31557868 31744506

Neighbor

gene id symbol gene type direction distance location
XLOC_018181 usta coding downstream 130478 31309364 ~ 31427390 (-)
XLOC_018180 hpcal1 coding downstream 249063 31232923 ~ 31308805 (-)
XLOC_018179 fam166c coding downstream 481896 31072892 ~ 31075972 (-)
XLOC_018177 NA coding downstream 490562 31002188 ~ 31067306 (-)
XLOC_018184 stxbp5a coding upstream 1443 31745949 ~ 31905968 (-)
XLOC_018185 adgb coding upstream 184871 31929377 ~ 32007209 (-)
XLOC_018186 rab32a coding upstream 264765 32009271 ~ 32045182 (-)
XLOC_018187 grm1a coding upstream 302879 32047385 ~ 32112818 (-)
XLOC_018188 NA coding upstream 392519 32137025 ~ 32139068 (-)
XLOC_017928 CU539064.1 misc downstream 21504167 10053405 ~ 10053701 (-)
XLOC_018178 AL929014.1 non-coding downstream 512663 31045075 ~ 31045205 (-)
XLOC_018176 NA non-coding downstream 584695 30965883 ~ 30973173 (-)
XLOC_018171 NA non-coding downstream 751394 30800868 ~ 30806474 (-)
XLOC_018170 NA non-coding downstream 1091830 30465502 ~ 30466038 (-)
XLOC_018195 CU138515.2 non-coding upstream 715769 32460275 ~ 32460391 (-)
XLOC_018196 CR354385.1 non-coding upstream 905337 32649843 ~ 32649959 (-)
XLOC_018200 NA non-coding upstream 1485657 33230163 ~ 33293844 (-)
XLOC_018201 NA non-coding upstream 1604668 33349174 ~ 33463368 (-)

Expression


Co-expression Network