XLOC_018186 (rab32a)


Basic Information

Item Value
gene id XLOC_018186
gene name rab32a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 32009271 ~ 32045182 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035839
catgaatgtgtgtgtgttcttttacGACTTTAAAGCCCAAAGCGGATGAAAAGCAAAGCAATCCAATCGAGGCGTGATATTTCCGGGTCCTATGACTTATCAGGTGGTTGTCCGGTGGGAGGAGAGGGAGTATGTGCTTTCTGTTTGAATACTTTCCTTACAGCCGTCCCCGAACCCAAAGCACTTCTGCAAACTGTGAGAGGGAAGTGGTTGCACAGAGTTGCCAAAACTTTTCCACTCTCATAACTGACATTTTGGCAGCATGGCAGGCGGGTCCGTGTCGGAGTGTAAGGAGTATCTGTTTAAAGTTTTGGTTATCGGGGAACTTGGTGTGGGAAAGACTAGCATCATCAAGCGATATGTTCACCAGCTCTTCTCGCAACACTACAGAGCGACCATAGGCGTGGATTTTGCTCTCAAAGTCTTAAACTGGGACAGCAAAACACTAGTACGACTACAGCTGTGGGACATCGCAGGTCAGGAGCGCTTTGGAAACATGACCAGAGTTTACTACAAAGAGGCAGTGGGTGCATTTATTGTGTTTGACATTACTCGAGGCTCCACGTTTGAGGCTGTTTCAAAATGGAAGCATGATTTGGACACCAAGGTGAAACTGGCCAATGGCAATCCTATACCTTCAGTCCTTCTGGCCAATAAATGCGACCAGAAGAAAGACGGATCCAACAATTCCTCACTCATGGACAACTTCTGCAAGGAGGCTGGCTTTTTGGGTTGGTTTGAAACATCAGCCAAGGAGAACATCAACGTGGACGAGGCTGCCCGGTTCTTGGTGGAGAACATCCTTCTCAATGATAAAGGTCTTCCGTACGAAGAGAACAATGGTGACAAGATTAAACTAGACCAACAAACTGCTCCTGCTGAGAGCAAGTCAGGTTGCTGCTAGTGCGGACGCTCACGTGTGTCCCATCATTTGCCACGGAAAGCAGGCAGGAGGCCAGAAAGCGAGCTCAACAAATTCAACAGATCAAACCCATGGATCACTAACATATTCAGGGGTTGACAGATACGTATCAGTTTGGGCTCTAAATGGCAAGACGACATCACTGCTGGAGGATCAGATGAAAACAAATTTCTATTGCTGTGTTTGACTGTTTATCTCTTTTTCTCTGGCCCTGTTCCACATTTGtcgcttttgtgtgtgtgtgtatgtgtgtgacaagCAAGTTACTTCAATGTGTACGTGTacatatgaatgaatgatacaaaaTGGGTGTCATAGGACCAGGTAAATACCAGTAGAAGTTCTTAGCCAAAATTAGATTAAATAGGGTGAGCTGTTTTAATATATTCTGGACTATTTGCGTTCGCTGCTGGGAATTGCCACCCTAAattttgcaggaaaaaaaaaagttctcaagATGTCACTTTATGACAAAATAGTCTGTATTCCCAGGGCATTTAGTCTGTTGTGAAGATCCAACCATGACTAGTCTTGAAGGTCTTGAAGTGTACAAATTTTATCATGAGGAAAAAGAAAGTTTAATAAGAGATCTGTAAGAATATTGGGCTATAAGCTTGTAAATATCTGGTTCAGAGAATAAAATCATGTTGGGTTTCCTCAGGCTCGTAAATGTTAATATTCAAgtgtttataaatagttttttaattgGTACTGAAGGAGGGATCTGAGCATGTGCTCGATCCATGGCTTTATTCTACAACAAAGGCAGATATACCTTTTTAACATGCTGGATGATCAAATTTATCAAGTTTGCAAACAAATGTCTGTTGAAGTAACAAtgacaataaaatgttttaaagtg
>TCONS_00035840
gtagctatgtttccatccaaagatgcaaattaaacttgTTCggaaaactggaatatcgcataaaaggcGTGTGAAGAAAGCAGCGGTTCCAtctaacgagtcaaagagaacaaaatcgtcacttcctgattaactggcgccaaatatcaaaagtaaaaatgtaatgGAGAACATCAACGTGGACGAGGCTGCCCGGTTCTTGGTGGAGAACATCCTTCTCAATGATAAAGGTCTTCCGTACGAAGAGAACAATGGTGACAAGATTAAACTAGACCAACAAACTGCTCCTGCTGAGAGCAAGTCAGGTTGCTGCTAGTGCGGACGCTCACGTGTGTCCCATCATTTGCCACGGAAAGCAGGCAGGAGGCCAGAAAGCGAGCTCAACAAATTCAACAGATCAAACCCATGGATCACTAACATATTCAGGGGTTGACAGATACGTATCAGTTTGGGCTCT
>TCONS_00035841
GGGAGTATGTGCTTTCTGTTTGAATACTTTCCTTACAGCCGTCCCCGAACCCAAAGCACTTCTGCAAACTGTGAGAGGGAAGTGGTTGCACAGAGTTGCCAAAACTTTTCCACTCTCATAACTGACATTTTGGCAGCATGGCAGGCGGGTCCGTGTCGGAGTGTAAGGAGTATCTGTTTAAAGTTTTGGTTATCGGGGAACTTGGTGTGGGAAAGACTAGCATCATCAAGCGATATGTTCACCAGCTCTTCTCGCAACACTACAGAGCGACCATAGGCGTGGATTTTGCTCTCAAAGTCTTAAACTGGGACAGCAAAACACTAGTACGACTACAGCTGTGGGACATCGCAGGTCAGGAGCGCTTTGGAAACATGACCAGAGTTTACTACAAAGAGGCAGTGGGTGCATTTATTGTGTTTGACATTACTCGAGGCTCCACGTTTGAGGCTGTTTCAAAATGGAAGCATGATTTGGACACCAAGGTGAAACTGGCCAATGGCAATCCTATACCTTCAGTCCTTCTGGCCAATAAATGCGACCAGAAGAAAGACGGATCCAACAATTCCTCACTCATGGACAACTTCTGCAAGGAGGCTGGCTTTTTGGGTTGGTTTGAAACATCAGCCAAGAAGACCATGAAAGCTGCCATATTAGATCAAGTATTTAAGATGGCTGACATTCTCTATGGTATTAGGGCCAAAACGGCACCACAGCGGCAGATTCTTAAGAACATTAGCCACTCCTCATGCCTGAATCACCAGACACATGTCAAATGTGCAGCGTGTAGCTCATCACGTGAAGCAGCGTGCGGGGTGTGTGGGATTCATGAGGAACGAATTTATGTCTTGCCTTAAGCTACTGAACTTTGCTCATTGGTTTGAATCAGTGATAGTGGTTGTTTGATAGAAAACTTGCATGACTGTTGCATTGGTAATGCTATTTAAATGAACAGTTCACCTAAATATGTATATTTGCTTGCTTATGAATCATCAGTTCCATTCAATGTGTggcatgattttatttttaataaaattcatATAATTCATAAC
>TCONS_00035842
GACTTATCAGGTGGTTGTCCGGTGGGAGGAGAGGGAGTATGTGCTTTCTGTTTGAATACTTTCCTTACAGCCGTCCCCGAACCCAAAGCACTTCTGCAAACTGTGAGAGGGAAGTGGTTGCACAGAGTTGCCAAAACTTTTCCACTCTCATAACTGACATTTTGGCAGCATGGCAGGCGGGTCCGTGTCGGAGTGTAAGGAGTATCTGTTTAAAGTTTTGGTTATCGGGGAACTTGGTGTGGGAAAGACTAGCATCATCAAGCGATATGTTCACCAGCTCTTCTCGCAACACTACAGAGCGACCATAGGCGTGGATTTTGCTCTCAAAGTCTTAAACTGGGACAGCAAAACACTAGTACGACTACAGCTGTGGGACATCGCAGGTCAGGAGCGCTTTGGAAACATGACCAGAGTTTACTACAAAGAGGCAGTGGGTGCATTTATTGTGTTTGACATTACTCGAGGCTCCACGTTTGAGGCTGTTTCAAAATGGAAGCATGATTTGGACACCAAGGTGAAACTGGCCAATGGCAATCCTATACCTTCAGTCCTTCTGGCCAATAAATGCGACCAGAAGAAAGACGGATCCAACAATTCCTCACTCATGGACAACTTCTGCAAGGAGGCTGGCTTTTTGGGTTGGTTTGAAACATCAGCCAAGGTAATATAAATTCATTTTGCGCTCACTTAATGTCTGTTTGTAATAGGTCAAGCCGAAGCAGAACTTGTCACGAGACATTTTTGCTAAGAATAGAAGCTTCTTAATACACCTTTCCTCTCTAATCAGCTCAGAAGACCATGAAAGCTGCCATATTAGATCAAGTATTTAAGATGGCTGACATTCTCT

Function

symbol description
rab32a Predicted to enable GTPase activity. Acts upstream of or within notochord cell vacuolation. Predicted to be located in Golgi apparatus; membrane; and vesicle. Predicted to be active in melanosome; mitochondrion; and trans-Golgi network. Is expressed in several structures, including Kupffer's vesicle; axial mesoderm; neural crest; retinal pigmented epithelium; and shield. Orthologous to human RAB32 (RAB32, member RAS oncogene family).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0032438 melanosome organization biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0042470 melanosome cellular_component
GO:0012505 endomembrane system cellular_component
GO:0031982 vesicle cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031006-10 Predicted to enable GTPase activity. Acts upstream of or within notochord cell vacuolation. Predicted to be located in Golgi apparatus; membrane; and vesicle. Predicted to be active in melanosome; mitochondrion; and trans-Golgi network. Is expressed in several structures, including Kupffer's vesicle; axial mesoderm; neural crest; retinal pigmented epithelium; and shield. Orthologous to human RAB32 (RAB32, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000029036

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035839 False 1784 mRNA 0.42 3 32009271 32045182
TCONS_00035840 False 457 processed_transcript 0.45 2 32010010 32010999
TCONS_00035841 False 1049 mRNA 0.44 3 32015773 32045057
TCONS_00035842 True 847 lncRNA 0.45 2 32016138 32045089

Neighbor

gene id symbol gene type direction distance location
XLOC_018185 adgb coding downstream 2062 31929377 ~ 32007209 (-)
XLOC_018184 stxbp5a coding downstream 103303 31745949 ~ 31905968 (-)
XLOC_018183 NA coding downstream 264765 31557868 ~ 31744506 (-)
XLOC_018182 sash1a coding downstream 265454 31428819 ~ 31743817 (-)
XLOC_018181 usta coding downstream 581881 31309364 ~ 31427390 (-)
XLOC_018187 grm1a coding upstream 2203 32047385 ~ 32112818 (-)
XLOC_018188 NA coding upstream 91843 32137025 ~ 32139068 (-)
XLOC_018189 cep57l1 coding upstream 96380 32141562 ~ 32149020 (-)
XLOC_018190 si:ch211-51a19.5 coding upstream 138647 32183829 ~ 32188897 (-)
XLOC_018191 armc2 coding upstream 183028 32228210 ~ 32270866 (-)
XLOC_017928 CU539064.1 misc downstream 21955570 10053405 ~ 10053701 (-)
XLOC_018177 NA non-coding downstream 941965 31002188 ~ 31067306 (-)
XLOC_018178 AL929014.1 non-coding downstream 964066 31045075 ~ 31045205 (-)
XLOC_018176 NA non-coding downstream 1036098 30965883 ~ 30973173 (-)
XLOC_018171 NA non-coding downstream 1202797 30800868 ~ 30806474 (-)
XLOC_018195 CU138515.2 non-coding upstream 415093 32460275 ~ 32460391 (-)
XLOC_018196 CR354385.1 non-coding upstream 604661 32649843 ~ 32649959 (-)
XLOC_018200 NA non-coding upstream 1184981 33230163 ~ 33293844 (-)
XLOC_018201 NA non-coding upstream 1303992 33349174 ~ 33463368 (-)

Expression


Co-expression Network