XLOC_018188


Basic Information

Item Value
gene id XLOC_018188
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 32137025 ~ 32139068 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036879
CCcatatttgttttacaatacTCAAACTTTATTTGATCACATTTTCAACCTAATTGTGAATGCAGATCAGAAATGAAGGAAAACACAACaacgaaagaaagaatgaaatCTGAGTTCCAGAGAAACAAAACCAACAAAGCAgggcataaaacaattaaggcaGACTTTCTGGACACAGACGCAAACAGTAGCCATCTTCTCAAAATATGGCATTGTTATGGCTGTTTCTGTGGTGCGCATGAACAAATGCAATAGGATATAAGGAAACAAGGCCACAGACTAAAGTTAGGTTGAGTTCTCTGAGTGCCAGAGGATTTTGAACcatttaactttttaaagaaTCGTTCAccacaaaaatgacaattctatGATCATTTTCTAACCCGCGTATTGTTCTAACCCTGTGACTTTCTTctgtaaacaaaaatatatccTCAAAATCAGCATTCTCCATACAATAACAGATGAGTCCATTTACATTGTATTCTTTTAAAGAGATGAGTATGGGAGAGAAAATCATGGCAgaatttatttttgggtgaactatcccttcaaatcCATCATGTAGCATGGTTTTTACAGCCCTTTGTATGCGCAGTTAACGTCCATTTGCAATTATGTGGGATCTTTGGATGTAGCCTGATTCTATACAGACAATACTGTGTATTTactgtttgttaataattacaatggaAACAACTAAAGTAAACAGCGTTTTAAATTTGGCATAGCTGAAGCTTTAAATGTATAGGAGTAAGCGTTATAGCAGCTTTTCTAGTGACTCGTGCTAAAATAGACACCTTTGGCATTTAAGCACCATGATACGACAATGCGCAAGCGATTAGAGTGGTTCAAGAAAACAAGGCCATAACAGTCATCTTCTGAGAAACATGCAATTAACACAATGCTGGGAATGGAACATGTCAAGGAAGCAGGCGAAATCTACAGCGTGCACCAAACAAATCAACTCGCTTCTGCCCTTACAAAATTTGCAATCCAAATAACGTGAATCACTTCCCAAGCCAACGACATCACGGCTCACAGGGGAAGTTATTAGCAGCAAGCTAATCAAGATTATTACATTTCAAATTTTATATAACACAGGAATGGatgtaaaaagaaaatacacATGCTAATGTACTAGCCAGACGAATGCACTTATGAAAAGTACCAAATTAAATATGCTGAACAACACAGGAATTAGGCATAGTCTAGCTTCAATTCTGCATTTTAGACAAATCTACCTGAACTCAAAGATTAGATTTCAAGAAATCAAACCCAAGCATTAAATGAAGAGTGCGATAGCTCTATTCTACTCCAAAATCTGACTGTagcaatacgaaaaaaaaaaaagaccaaataaGCAAAAGATATCCAGAATGCACTTTTCTAGGGCACTTTAAAAGATatttaacataaacaaaaacTTTAGGATCTGCGTACAGTGTCCTGAAGTACGTTCACCTCAACTTTTTATTCATCTGACATTTTACTTCCTCTCATATAATGATATTATTGAATTCAAAGAGTTCTGATTATGTACAAATAGTTATCTGCTTTAGAATAGGAGTGCTAGAATCTGTGCTAGCAGAAATTAAGCTTTTGGGAAACATGACAatgcataaacaaatgatttaatcTTTAATTATCTACTCTGTATAATATAGCGATCAGTCCAGCTGGCAGACACTAGATCTATTTCATTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036879 True 1706 lncRNA 0.35 2 32137025 32139068

Neighbor

gene id symbol gene type direction distance location
XLOC_018187 grm1a coding downstream 24207 32047385 ~ 32112818 (-)
XLOC_018186 rab32a coding downstream 91843 32009271 ~ 32045182 (-)
XLOC_018185 adgb coding downstream 129816 31929377 ~ 32007209 (-)
XLOC_018184 stxbp5a coding downstream 231057 31745949 ~ 31905968 (-)
XLOC_018183 NA coding downstream 392519 31557868 ~ 31744506 (-)
XLOC_018189 cep57l1 coding upstream 2494 32141562 ~ 32149020 (-)
XLOC_018190 si:ch211-51a19.5 coding upstream 44761 32183829 ~ 32188897 (-)
XLOC_018191 armc2 coding upstream 89142 32228210 ~ 32270866 (-)
XLOC_018192 foxo3b coding upstream 147697 32286765 ~ 32332736 (-)
XLOC_018193 afg1lb coding upstream 198454 32337522 ~ 32405451 (-)
XLOC_017928 CU539064.1 misc downstream 22083324 10053405 ~ 10053701 (-)
XLOC_018177 NA non-coding downstream 1069719 31002188 ~ 31067306 (-)
XLOC_018178 AL929014.1 non-coding downstream 1091820 31045075 ~ 31045205 (-)
XLOC_018176 NA non-coding downstream 1163852 30965883 ~ 30973173 (-)
XLOC_018171 NA non-coding downstream 1330551 30800868 ~ 30806474 (-)
XLOC_018195 CU138515.2 non-coding upstream 321207 32460275 ~ 32460391 (-)
XLOC_018196 CR354385.1 non-coding upstream 510775 32649843 ~ 32649959 (-)
XLOC_018200 NA non-coding upstream 1091095 33230163 ~ 33293844 (-)
XLOC_018201 NA non-coding upstream 1210106 33349174 ~ 33463368 (-)
XLOC_018210 BX571790.1 non-coding upstream 1562049 33701117 ~ 33701233 (-)

Expression


Co-expression Network