XLOC_018191 (armc2)


Basic Information

Item Value
gene id XLOC_018191
gene name armc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 32228210 ~ 32270866 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035850
TCGAGTCCCCTCTATTTGCTGTCACACACGCTGACGTTTCTGGATTAATGATGACCTTTTTAAAACAGTGAAACCAAGAATCGGCTTAAATCAAGTTATGGAGCTTTCCACCCATTTTGGCTATCAGATAATGTAAGGTCTCAGACCCTTGAAATCTGTACGCATTCCTCTCATGGATAAAGCATGTCTATAATGGAGCTTCAGCAGAACAAAAGTGATGGTGTCTACATGAGCACTGGCCACAGGAGACAGACTAGTGCAGAGATAGTGTCAGAGGCTCGACGCTCTCTCAGATCTCTTGCCACACAGAGACCTTTCACACCTCAGGAGAAAAACCGGCAGCTCTTTGGAGAATCTTCATCTCGTGCACGTGATGGACGACCACCATCTGCATTCAGTCTTCATGCCCGACATTTTGAAGCTCCTGACTCCAGGCCAGGATCTGGAACTCGTCTTAGTCCACTGGAACATAAACCCAGGGTGTCTGTTTCCCTGGATGAGGATGGAGGCGACGATGAAGCTGCTCATCCCAAACCCCCAGTGGAGCGAGGAGGTACTAGGACTGGATCGGGAGGTTCTCGTGCCAGACTGCTTAGAGCCACATCTGTCAGCAAAATACCACCTATGACACCAAATGCAAAAAATATGTCTCCAGAGGCCAGGATTGGAGGAGACCAACCAGATGACGGAGACAATCTACACTCAGCTGATATCACAGAGCATAAAACAAAATCTTCCTCTGAAACTGATCTGCACAAACAAAGaagaccACAAATTGACGTTTCCAGTCCAAGTGGATCAAAACCAGATGCAGATGACAGTGAGGATGAATCTGTGTTCTGGAACACTAAAGTCCTGCCCGTCCTTCAAGAATTCGAGTCCTTTGCTGGAGGTGATGCTGTGTCAGATGAGATTGTGGGACAGCTGTGTAACTCGTGCAATGGTCTCCATGATGCCCTGGCAGAGAGAGGCATGCTGGGAAGGCAGTGTAAAAAGAGGTCCGGCATACTGAGAATACTGTTCAGACTTATAGATGTTGGATCGGACCGACTTAACCTAACGTTAGCCAAGCTTATTCTGGCACTCAATGTGAGTGGAAACAACTTGCTGAACATCTGCAAACTCGTCTTCAAAATCAGCCGAAACGCTAATAATGACGCCCTGTTCCTCAATGGCTCCATCCTAGACTCCCTTGTGTCTCTGCTCCAGTGTGAGGATGTGTGGAGTAAAGGTGAGGCCGTTCTGTACTGTGTGGGCTCACTGAAGCTTCTCTCAGGAAACAGTGCCCTCTCCAGGCTGCTGCTGGATAAAGGCTTCATCGGTGTCCTGATGCAGTTGTCGAAGAGACTGATGCACAGCCCTTCTGCAACTTCAGCTAATGTTAATACTCACAGGTCAGATGGAGAAGGCCAGCAGATCATCACAGGACACATACTGGTACAGGTCACAGCAGCTTTGAGAAATATAGCCGACCAGTCTGAGTCTCGGCCTTCCTTCCTGTCAAACAAGGCATTTTCTACGCTTTGCTTGATTCTGGAAAACCACCGCAATGACCTTGATGTCTGCATTAATGTGGCCCGAATATTCAGCAAGCTGTCCACCTACACTGAATGCTGTCATGCACTCGCTGAGACGCCACGCTGCTGCAGCCTATTTTTGGAGCTGCTAGGCAAACACAGCAGGAAACAGGATCTTGTGGTGCGTCTCCTGTTCACACTAGGAAATCTGACCGCCAAGAGCACTGAAGCCAGAGAGCAAGTCTATGAGGAGGAACGAGGAATGGATGTCCTCCTAGATCTTTTCCAGGCCTACCAGAATACGTCATCGCCCCCTGAACAACGTCTTTCTCCAGAGAGAGAGGACGTCTTGGTCAAACTAATCAGACTGCTGGCCAACCTGGCCATCCATCCCACAGTGGGCACAGCATTGGCTGCCAACACATTGTGTGTACAGCTGCTACTGGAGGTTCTGGAGTGCAGGAGTGTCCAGGAGAGTGAAGAGTTAGTGATCAATGCAGTGGCCACCATCAACAACCTCTCTTTCTACCCGTCCCAGAGCTCAGTGATCCgttcccaacacacacacatctcccaGTTGCTGCTCAAGCTCTTGCTGGGCTCCAGTATGGATGCAGTTTTGGAGGCCACGCGGGTGTTTGGAAACCTGTCACAGATCAAAGACGTGAGACGCTTCGTCATGCAGCACAAAGtggAGCAGTTTGTCATAACCCTCCTGGACTCCAAGAGCCCTGATGTGTGTTTCTCTGCATGTGGAGTTCTCATCAACTTATCTGCAGATCCCGACAACAGGGCCATGCTGAGCGCCGAGGGAGCCGTTCAGAAGCTTGTTGACTGTCTGCGTGACTTCGGGCCTCAGGACTGGCATTTAGCCGCTGTGGTGTGTCAGACTCTGTGGAACTGCTCTTTAGATGGAGAGCTCCAACACGCTCAAGAGCTTCTGGAGATCTTACGGCTTTACACAGACAGAGAAGCTTTGCAGTGGCCTTCTGAAGACGGAGTCAGACAGGTTCAGGAAGCACGCTGGGAGCTGCTCTTTCTACCAGTAGCTGAAAGGCTGAGACAACGTTTACATATTGAAAACACCACTGGAATCATTCAATAAGCACAAGTGATGCACAGCCTTATCTCCAGTCTTCACAACCACAAACAAGCTGGTGTGTATAATGCACTTTAAGACAAGTTAATACTGTATATAGGCTACTGttcaaataattatatacaaataatacTATTCGAATGTTTATTATTCAACAGAAAATTGCTGTAAATTACATTCAAAGATATTATGAAGGCAATAATCATGTGTATAAATCCACTCACGACACTATCAATCATCTTAAAAGACTTTATTAAACAGACACTTCCAGAAAAGTCTGTAAGGAACACAGAATAGAAACATTGTCATACTTGCTTAATACAATCACATCAAACCTATATACTGTAATATGGCACTGGCTTCCCTCCTTTTGCCCTGACAGTTACACTTTACAGCTGAAATACATTAATATGAAGTTAACACAGCTGCCCTAGAGGTGAGCTATACATGcttaaaatgtgattttgttggtgaattgtatttaattactgtgtGGCTTTTAGTCTTCAGTGTGAAGTCTAAAGCAGCACATCTCTAAGGGACTTTATTcagaaaatataaacatttttaggaGTTGAAACCAACTTCTTgtcatttacttttaaaatgagcaACTAGCCTATGGTGATTTCCAAACAATGACCATTTACTGGCACCAAATGGCCTCGGATGATAGAGGGAAATTTGTAACTATGggaaaattttattatttttgtaaaagggatagttcccaGGTCAGCACTGTGACTTTCTTTTATCCATGCTGTGAGAAGATGAATTGCTACCTTCAACATTGTGTGTTTAAATCATTAGTGCACAGCATGGGACGCTTTACTTTAGGCTTGTTTTGATACATAAAACTTTGATATAAGGGCGAGTAGTTGTCATCAAAACATTAATTATGTGACCTAAAGTTACATAAATGATATCCTAAAGTGTGTTATTCTTGTTAAGCACACAAATATGAATGAGAAAAGCTTTAGTTCTTGTGGTACGGCCTGTTTAAATCTTTTAATACTAAATAACAGTGATTGTTTGGTGCAATGTATCATTTTACTGTGAGTTTCTGGGAAGAAAGCAAAAATGATTAAACTACAAATGAAACAAGTGaaatacaatgttttatttttctttctttttttatcaaatattttctTATAAAAGTGTCAGTAACTGACATCAGTCTCTCAAGTCTGACTTAAAACCTCCTCATATCCATTTCCAAAGAAAAAAGTACCATCCCTCTAGTCCTGCCATCATCAGAATGCAGTACTTAACTGGttttagtaaacaaaacaaaaaaaagacagcaGAGAATCCACCCTGCTTGAAAAGAACACACACGCTCACTCGAAACAAAACTGCTTAGTTACACTGGTTAAAGTTCTGAGAATGAGAACAAGCATTTAACCCCACAGCCGCACGGGTCGCCTGGTTCTTAGAGACTACGTCTGTACAGATTGCAGCCCACAACATTGTAAGACAAAAGTTCAGCTCACCAGACAGCACTTAGATATTTAAGGATACAACAGGAGGTATTTAGTTATAATAAACCccaaaatgacaacaacaaaaaaaaaaagcttgagttTAGATGACCGTGCATTACAAGGAAGACAGATAAGGCGGATGGATCAGAGCAACAGGAAGCACATCACAAAAGGAAGACCTTTTCGCTTTAAAAGTCActaacacacaataaaaaaagagataGGAAACGGTCATCGAAACAAAATGGCTACATAACAGCTGaagcttaacatttttttttcttaaaaaagtgctttgacattttaaatgcatgaaAACCCCAAAAGAGCCTATGTTTGGATTTTTTTAATCCCCCTCCCTCACATAGCATTCACACATTGGAAATGTGACGAAAAGTGGTGTCTTACAGTAACCTATAAGAAGGGCTCAGAACAGCTATTACTTTTGAATTGCGCTCTCACACTCACATTAACACAATCGTTCCTGGATTAGCTTATACAAATGGGTGATGGTTTGGGTGTCTTGAGGCCTCTCAGTTGAGAAAAGCAGCATGAACAGACGGCACCTCGGCATCTGTTGCCAGTGCTGCGCATGACTAGGCACGCGTTTATGCAAAAATCAGTAATGCTTCTATCTCTAGCCACTGctcaaattttgtttaaaaacaatataaaacgaTATGAAACGAAACATACTAGTAGATAGGCATGTTAGTGCAGTCTATCTGCACCATTGCTGGAGttgctatttgtgtgtgtgtgtgtgcatgttgttttttttaatctcacaAAAAGAAGATATGATTATATAGCATCTTATCGCAGATGCATTTGAAATACTAAAGGAGGCCTGGCCTCCAGAAGCTCGCCGTTTCAGCTTGTCCTCTTGAGAAACTGAATCCCCTCAGACGCCCACTAGTGGAGGCTGAGAGGACACACAAGTGATTCAGCAAGTAaggtttggttgttttttttttctccttcttttATCAAAACAACCTTGTCATTGTCCTCCAGTGCGGCCACTCAATCGTTCTTCCTCCTCCATTTTatgtttttccatttttttgttgtttttatgtttaataaagtgtCCCACTGtagcaacatcaacaacaacagtaaACTATTAATTAAGAAGGTCGACAAGAACAGCACTTCATGTCATGTAGCGAGTGATAGCTCTCAGAGCGTAGAGCAGTTCTGCCTGCATGCGCGCTTCCATAAGAAGCAAATTAACGTGGACCTGAAAGACACAACGAAAGaggatttaaattaaaacaatctttcttttttaaatgtaattttttggtGTTTTCTGAAGCCTTTCTTACTTTCTCAGAGTGCCGGAACTGTCTCCAGAAGCTCTCGTACATCCTCTTGGTGATTTTCTCTGGACTGCACACCATTGTTTTGATGTAGACTTTAAAACTGCGGTCTAACAGTTGGTTAATTTCTCCATAATCATAATCGTCGTACCTGCCACGCAATAGGAGAAAGAGATATTTTAATGACTGGAGGCGACAAATAATACAGTACTCATTAAGACTAAAATTGCATTTTGTAAGCTGTGCACtactaaaatacatttttcacatttttattctttttttttgcctACAGTTATTCTAGtatgtaaaatagaaaaaaaaaacatatttgccagttattttttataaatgtgtgttatacattt
>TCONS_00036880
ATGTCTATAATGGAGCTTCAGCAGAACAAAAGTGATGGTGTCTACATGAGCACTGGCCACAGGAGACAGACTAGTGCAGAGATAGTGTCAGAGGCTCGACGCTCTCTCAGATCTCTTGCCACACAGAGACCTTTCACACCTCAGGAGAAAAACCGGCAGCTCTTTGGAGAATCTTCATCTCGTGCACGTGATGGACGACCACCATCTGCATTCAGTCTTCATGCCCGACATTTTGAAGCTCCTGACTCCAGGCCAGGATCTGGAACTCGTCTTAGTCCACTGGAACATAAACCCAGGGTGTCTGTTTCCCTGGATGAGGATGGAGGCGACGATGAAGCTGCTCATCCCAAACCCCCAGTGGAGCGAGGAGGTACTAGGACTGGATCGGGAGGTTCTCGTGCCAGACTGCTTAGAGCCACATCTGTCAGCAAAATACCACCTATGACACCAAATGCAAAAAATATGTCTCCAGAGGCCAGGATTGGAGGAGACCAACCAGATGACGGAGACAATCTACACTCAGCTGATATCACAGAGCATAAAACAAAATCTTCCTCTGAAACTGATCTGCACAAAC

Function

symbol description
armc2 Predicted to be involved in sperm axoneme assembly. Human ortholog(s) of this gene implicated in spermatogenic failure 38. Orthologous to human ARMC2 (armadillo repeat containing 2).

GO:

id name namespace
GO:0007288 sperm axoneme assembly biological_process
GO:0044782 cilium organization biological_process

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-041014-7 Predicted to be involved in sperm axoneme assembly. Human ortholog(s) of this gene implicated in spermatogenic failure 38. Orthologous to human ARMC2 (armadillo repeat containing 2).

Ensembl:

ensembl_id ENSDARG00000022660

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035850 False 5802 mRNA 0.42 18 32228210 32270866
TCONS_00036880 True 577 lncRNA 0.50 4 32263188 32269895

Neighbor

gene id symbol gene type direction distance location
XLOC_018190 si:ch211-51a19.5 coding downstream 39313 32183829 ~ 32188897 (-)
XLOC_018189 cep57l1 coding downstream 79190 32141562 ~ 32149020 (-)
XLOC_018188 NA coding downstream 89142 32137025 ~ 32139068 (-)
XLOC_018187 grm1a coding downstream 115392 32047385 ~ 32112818 (-)
XLOC_018186 rab32a coding downstream 183028 32009271 ~ 32045182 (-)
XLOC_018192 foxo3b coding upstream 15899 32286765 ~ 32332736 (-)
XLOC_018193 afg1lb coding upstream 66656 32337522 ~ 32405451 (-)
XLOC_018194 nr2e1 coding upstream 166530 32437396 ~ 32446406 (-)
XLOC_018195 CU138515.2 coding upstream 189409 32460275 ~ 32460391 (-)
XLOC_018196 CR354385.1 coding upstream 378977 32649843 ~ 32649959 (-)
XLOC_017928 CU539064.1 misc downstream 22174509 10053405 ~ 10053701 (-)
XLOC_018183 NA non-coding downstream 483704 31557868 ~ 31744506 (-)
XLOC_018177 NA non-coding downstream 1160904 31002188 ~ 31067306 (-)
XLOC_018178 AL929014.1 non-coding downstream 1183005 31045075 ~ 31045205 (-)
XLOC_018176 NA non-coding downstream 1255037 30965883 ~ 30973173 (-)
XLOC_018200 NA non-coding upstream 959297 33230163 ~ 33293844 (-)
XLOC_018201 NA non-coding upstream 1078308 33349174 ~ 33463368 (-)
XLOC_018210 BX571790.1 non-coding upstream 1430251 33701117 ~ 33701233 (-)

Expression


Co-expression Network