XLOC_018193 (afg1lb)


Basic Information

Item Value
gene id XLOC_018193
gene name afg1lb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 32337522 ~ 32405451 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035852
AAAGTTATTAAGTTTTGAATCAACATGGCGGCGTACGCGTCTCGGTGGAGAACGGACTGTCTTTTAAGACTTGTGTTCAAAAAGACTAGGTTGTCGAAACAAGTTTGCTGTGAAGTGTGTAAGGCAAGCAGAGGGTGTTCGACAACATCTACAGGACATACATCTACTTCAGCACCCTGGCCTGTCTATGGCAGACTTGTAACACACTATGACAGCCTTGTCCACTTCGGTTCACTCCGAAAGGACCCGCAACAGAGAACTGCACTTCTTCAGTTAGAAGAATTAACCAGAGTGCTGACAGACTATACCAACATCCCTATCCTTCTCCCTCAACCTAAAGACTGCTTACAGAACCAACCAACCTCAGAACTGCAGGATAAAGTTGGGTCAAGGGAAACGGTGAACATTTGCAGACCTGATGAAAATGTGTCAAATGAAAAAGAGGACCAACAAGAGGAGTCCTCTAAGCCACATCCACCCCAAGGTTATTATATCTATGGTAATGTTGGCACTGGAAAAACAATGCTGATGGATCTTTTTTACTCATTTGtggaaaacagaagaaaaaagagGGTTCATTTCAATGGATTCATGTTAGACGTACACAGAAGGATCCACAAACTGAAACAGAGCCTGCCAAAGCGACGGATAGGTAAAATGACAATGTATGACCCCATCTTTCCGGTTGCCATGGAGATTGCAGAGGAAACCTGTCTCATATGCTTTGATGAGTTTCAGgtggtGGACATAGCAGATGCTATGATCCTGAAGCAGTTATTTGAGGGCTTGTTCAAGTGTGGGGTCGTGGTTGTGGCAACCTCAAACAGACCACCTGAAGAACTGTACAAAAACGGGCTTCAGAGGGCTGCTTTTGTGCCTTTCATTGGCGTACTCAAGGAGTACTGTCGGATTGTCAGTCTGGACACTGGAATAGATTTCCGGACGAGGGAAATGAAACCAGCAGGAAGATTATACTACATATCAAGTGAGCCTGATGCAGAGAATGCTGTCAATGCGCTGTTTGAGGAACTGGCATTCAGACAAAATGATGTGACCAGGCCGAGGGTGTTGAATGTCCAGGGAAGAGAAGTAACCCTGAGCCGGACCTGCGGAACCATTGCAGATTGCAGCTTCCAGGAACTCTGTGAGCAACCACTGGGTGCAGGCGATTATTTAGAAATCGCACGCTGTTTTGACACGGTCATCATACGTAATGTTCCTTACCTTCAACTCGGAATGAAGGACCAGGCGAGACGTTTCACTACACTCATCGACAACTTCTATGATCAAAAGGTTAGAGTGGTGATGTTGGCTGATGCACCGTTAGACCGTCTCCTTGATCAGGGACAGATGACTGGTGAAGAAGCGAGAGATCGCCTAATGCTGGATGAACTCGGCCTGACTGATgAGGCCAGCAAGCGAATTACTCTGTTCACTGCGGATGAAGAGATCTTTGCCTTCCAGAGGACAGTGTCTCGCCTTGCAGAGATGCAGACAGAACAATACTGGATAAGTGGAGATCGGAGTCAGTCATGATCTAAAAATGGTACAAGTCCATCACCATGAACAGACTGTAAGCCTGCTATTTTCAACAGCAATGGGAATCTTTCATATCCCCACTGCACCATTAATGTGCAAAAGTACATCTCATCATGCGCAGGGAGATATTGCGTATGCTGCCAAATGAGAAGATGTctagcaccctctagtggattataTAATCTGTAGTGTTTAGTGtatgtacttttgaaaacactcccTCTGTGAGGAAGACAAAGTTTATTCTTAATGTAATGGCAACATAAATATTTCAGTGTTGCA
>TCONS_00035853
AAGAGCTCAATAAAGTTATTAAGTTTTGAATCAACATGGCGGCGTACGCGTCTCGGTGGAGAACGGACTGTCTTTTAAGACTTGTGTTCAAAAAGACTAGGTTGTCGAAACAAGTTTGCTGTGAAGTGTGTAAGGCAAGCAGAGCAGTTACAACATCTTCACAAGTGTGTTCGACAACACAAGGGTGTTCGACAACATCTACAGGACATACATCTACTTCAGCACCCTGGCCTGTCTATGGCAGACTTGTAACACACTATGACAGCCTTGTCCACTTCGGTTCACTCCGAAAGGACCCGCAACAGAGAACTGCACTTCTTCAGTTAGAAGAATTAACCAGAGTGCTGACAGACTATACCAACATCCCTATCCTTCTCCCTCAACCTAAAGACTGCTTACAGAACCAACCAACCTCAGAACTGCAGGATAAAGTTGGGTCAAGGGAAACGGTGAACATTTGCAGACCTGATGAAAATGTGTCAAATGAAAAAGAGGACCAACAAGAGGAGTCCTCTAAGCCACATCCACCCCAAGGTTATTATATCTATGGTAATGTTGGCACTGGAAAAACAATGCTGATGGATCTTTTTTACTCATTTGtggaaaacagaagaaaaaagagGGTTCATTTCAATGGATTCATGTTAGACGTACACAGAAGGATCCACAAACTGAAACAGAGCCTGCCAAAGCGACGGATAGGTAAAATGACAATGTATGACCCCATCTTTCCGGTTGCCATGGAGATTGCAGAGGAAACCTGTCTCATATGCTTTGATGAGTTTCAGgtggtGGACATAGCAGATGCTATGATCCTGAAGCAGTTATTTGAGGGCTTGTTCAAGTGTGGGGTCGTGGTTGTGGCAACCTCAAACAGACCACCTGAAGAACTGTACAAAAACGGGCTTCAGAGGGCTGCTTTTGTGCCTTTCATTGGCGTACTCAAGGAGTACTGTCGGATTGTCAGTCTGGACACTGGAATAGATTTCCGGACGAGGGAAATGAAACCAGCAGGAAGATTATACTAC

Function

symbol description
afg1lb Predicted to enable ATP hydrolysis activity. Acts upstream of or within cilium movement. Located in cytoplasm and nucleus. Orthologous to human AFG1L (AFG1 like ATPase).

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-178 Predicted to enable ATP hydrolysis activity. Acts upstream of or within cilium movement. Located in cytoplasm and nucleus. Orthologous to human AFG1L (AFG1 like ATPase).

Ensembl:

ensembl_id ENSDARG00000042902

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035852 False 1821 mRNA 0.45 13 32337522 32405440
TCONS_00035853 True 1028 mRNA 0.44 8 32351777 32405451

Neighbor

gene id symbol gene type direction distance location
XLOC_018192 foxo3b coding downstream 4786 32286765 ~ 32332736 (-)
XLOC_018191 armc2 coding downstream 66656 32228210 ~ 32270866 (-)
XLOC_018190 si:ch211-51a19.5 coding downstream 148625 32183829 ~ 32188897 (-)
XLOC_018189 cep57l1 coding downstream 188502 32141562 ~ 32149020 (-)
XLOC_018188 NA coding downstream 198454 32137025 ~ 32139068 (-)
XLOC_018194 nr2e1 coding upstream 31945 32437396 ~ 32446406 (-)
XLOC_018195 CU138515.2 coding upstream 54824 32460275 ~ 32460391 (-)
XLOC_018196 CR354385.1 coding upstream 244392 32649843 ~ 32649959 (-)
XLOC_018197 si:dkey-6f10.3 coding upstream 250407 32655858 ~ 32752457 (-)
XLOC_018198 si:dkey-6f10.4 coding upstream 260933 32666384 ~ 32669342 (-)
XLOC_017928 CU539064.1 misc downstream 22283821 10053405 ~ 10053701 (-)
XLOC_018183 NA non-coding downstream 593016 31557868 ~ 31744506 (-)
XLOC_018177 NA non-coding downstream 1270216 31002188 ~ 31067306 (-)
XLOC_018178 AL929014.1 non-coding downstream 1292317 31045075 ~ 31045205 (-)
XLOC_018176 NA non-coding downstream 1364349 30965883 ~ 30973173 (-)
XLOC_018200 NA non-coding upstream 824712 33230163 ~ 33293844 (-)
XLOC_018201 NA non-coding upstream 943723 33349174 ~ 33463368 (-)
XLOC_018210 BX571790.1 non-coding upstream 1295666 33701117 ~ 33701233 (-)

Expression


Co-expression Network