XLOC_018194 (nr2e1)


Basic Information

Item Value
gene id XLOC_018194
gene name nr2e1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 32437396 ~ 32446406 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035854
ATCTGACGGTACACATCACAAAGTCACTCACCAAGGCTTGGGCTGCGACGCATTTCCCAGCTCACGTTGTACATTTGAAGCAGGTGTTGAGCGGTACAGTTGTTGGCTTGGTTTCACAGTTAGTTGCACCAACTTTTACGTGGGGCAGAGAGATCAGAGACCAGCTTTGGCATATCATCTGTGAAGCTGCATCCATCATCCATCAACAGTGAGACGTAATTCGGATTTTATTTGCTGAAAAACAAGAGGAACATTTTGGACACATTCAGAAACTGCAAGAGAAATCAAAGGACCAGTTGTGCACCGCAAATCGGatgttaaatgtatgtttcttTTTTCAATCTAAGTCAAAAGTGCTAAGACTGCCCTGGGCCTGAAAAGTTGAACTTTTGAAACGCAATTTCTCGGAGCCGTGGTCTTCAATATGAGCAAGCCTGCTGGTTCAACAAGTGGTTGTCTggatattttaaatgtcaaatccaGTCGGATTCTGGATATCCCGTGTAAAGTATGTGGAGACCGAAGTTCTGGAAAGCACTACGGTGTTTATGCGTGTGACGGATGCTCGGGATTTTTCAAGAGAAGCATAAGAAGAAACAGAACGTATGTCTGCAAATCTGGCACACAGGGCGGCTGTCCAGTTGACAAGACACACAGAAATCAGTGTCGCGCCTGTCGCTTGAAAAAATGTCTTGAAGTGAATATGAATAAAGATGCTGTGCAGCACGAGAGGGGACCGAGGACATCAACTATTCGAAAGCAGGTGGCACTGTATTTCCGAGGGCATAAAGAGGTGAACGGTTCGTCGACCCATTTCCCATCCACGTCTATCCCGGGGCCGccgtttttcactacagtcacgCAGCTGGAGCCTCACAATCTGGAGTTAAACACGGTCACAAGCACACCGGAAAGGCAGGCAATTGTGGGACTTGCTCAGCCCACACCGAAGTATCCTCATGAAGTTAGCGGCACCCCCATGTACCTGTATGAAGTGGCGACCGAGTCTGTGTGCGAATCAGCCGCGCGTCTGCTTTTCATGAGCATTAAATGGGCCAAGAGCGTTCCTGCCTTCTCCACACTCCCTCTACCTGACCAGTTGATCCTTTTAGAAGATGCCTGGAGAGAACTGTTTGTGCTGGGTATTGCACAGTGGGCCATTCCAGTAGACTCCAGTACCCTCCTAGCTGTTTCAGGAATGAACACGGAGAACACAGATTCCCAGAGGCTCAACAAAATAATTTCGGAGATCCAGGCGCTGCAGGAGGTCGTGACGCGCTTCAGGCAGCTCAGACTGGACGCGACGGAGTTTGCTTGTCTCAAGTGCATAGTCACATTCAAAgcagTCCCAACACACAGTGGTTCGGAATTGAGGAGCTTTCGCAACGCGAGTGCCATTGCAGCACTTCAAGACGAAGCCCAGCTGACTTTAAACAGCTACATTCACACCAGGTACCCCACTCAGCCATGTCGTTTTGGGAAACTGCTGTTGCTCTTGCCTGCTCTACGTTCAGTCGGACCATCCACCATTGAAGAGGTGTTCTTCAAAAAGACCATCGGAAACGTGCCCATCACACGACTGCTCTCCGACATGTACAAATCCAGCGATATATGAGCTActgagagacagaaaaaacaaaatgtaTCGTTGACCTTGGCTTTCGCATGGACGCTGGGACAATGTGGACAATACCAGATGTCCTATGTGACACATCACGCACTTCTCTGGAGAATAAAGCTCTACCAATGTCAAGATGTTTTACGCAGGGAAATTATAAAAACAGACAGACTCACTTGCTGCAAGTTGAGCTCACTGCTTAGAAAGAAAAAAACGAACTTTTAACCAGTAATTTTCTAAttgatttactttatttaagtTCGTTTATGAAAGTAACTTAACAAGTTTAATCTGTTCATGTTCTTTCAAGATTTAAATACAAAAGTATCTTAGTTTGTAGTCATATATTTGAATGGGGTGTCCGTGAGGTTATGTACAATCATTCATTTCAAAATAGGACGTGTATGTCCACTTGACCAAGTACCTTTTTTGACCAATGCTGTTTTGAATTCAGCGCCACTAATATTCATTTGTCAACAAGAAACCAAAAATGACAAAGAGACCATGAGGTATGTTGCAGGGAAGTAGGTCGCTGTCCCTTTGACATAGTGCTGAAAACCAAAGGCCCATGAGTCAGAACTGAAGAGCAAGTTCATTCCTGTTCTGCCTTCTGTAGTAGAAGCTCCAACTTTAATCAAAAACACTTGAACCAACTAATCGGGTTTACTTGAAATGTTTGTTGAACagttggagttaaactctgcATGAAGGCAGCTGGATTGAGCATTCCTGACTTAATGCATCACATAATTACCTACTGAGGTGACTGAAAGGCCACAGCACCCACACCTTGTGACCTTAATGTAAGATTAGGATTCACTGGCAGGGCATCTAAAATCctttggaaatatttttgttgaattttctGTGCACCCACTCtgccattttaattttattgatgtTTAAAAAGCTTGATAAGTGGCCCATGTCAGAGGTCACCATTAAGTACCTTTGTTTAAATAGCTACTAACCCTGGGAAAGAGACACAATCAGCACTTGGATTTTTTTGTAGTCTGTAAATACATTTCCTGTTGTACAGTGATAATTTTTGTGAAAGTTGTTCTAAGATATTAgaataaatattgaatattg

Function

symbol description
nr2e1 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; presumptive diencephalon; and presumptive neural retina. Orthologous to human NR2E1 (nuclear receptor subfamily 2 group E member 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048856 anatomical structure development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04013 MAPK signaling pathway - fly
ko03000 Transcription factors
ko03310 Nuclear receptors

ZFIN:

id description
ZDB-GENE-040801-127 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; presumptive diencephalon; and presumptive neural retina. Orthologous to human NR2E1 (nuclear receptor subfamily 2 group E member 1).

Ensembl:

ensembl_id ENSDARG00000017107

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035854 True 2710 mRNA 0.44 9 32437396 32446406

Neighbor

gene id symbol gene type direction distance location
XLOC_018193 afg1lb coding downstream 31945 32337522 ~ 32405451 (-)
XLOC_018192 foxo3b coding downstream 104660 32286765 ~ 32332736 (-)
XLOC_018191 armc2 coding downstream 166530 32228210 ~ 32270866 (-)
XLOC_018190 si:ch211-51a19.5 coding downstream 248499 32183829 ~ 32188897 (-)
XLOC_018189 cep57l1 coding downstream 288376 32141562 ~ 32149020 (-)
XLOC_018195 CU138515.2 coding upstream 13869 32460275 ~ 32460391 (-)
XLOC_018196 CR354385.1 coding upstream 203437 32649843 ~ 32649959 (-)
XLOC_018197 si:dkey-6f10.3 coding upstream 209452 32655858 ~ 32752457 (-)
XLOC_018198 si:dkey-6f10.4 coding upstream 219978 32666384 ~ 32669342 (-)
XLOC_018199 nbas coding upstream 392061 32838467 ~ 33174899 (-)
XLOC_017928 CU539064.1 misc downstream 22383695 10053405 ~ 10053701 (-)
XLOC_018188 NA non-coding downstream 298328 32137025 ~ 32139068 (-)
XLOC_018183 NA non-coding downstream 692890 31557868 ~ 31744506 (-)
XLOC_018177 NA non-coding downstream 1370090 31002188 ~ 31067306 (-)
XLOC_018178 AL929014.1 non-coding downstream 1392191 31045075 ~ 31045205 (-)
XLOC_018176 NA non-coding downstream 1464223 30965883 ~ 30973173 (-)
XLOC_018200 NA non-coding upstream 783757 33230163 ~ 33293844 (-)
XLOC_018201 NA non-coding upstream 902768 33349174 ~ 33463368 (-)
XLOC_018210 BX571790.1 non-coding upstream 1254711 33701117 ~ 33701233 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_08701427_08704727 NR2E1 coding CI01000325 null 8701300 ~ 8704727 (-)