Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_018196 (CR354385.1)

Basic Information

Item	Value
gene id	XLOC_018196
gene name	CR354385.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007131.7
NCBI id	CM002904.2
chromosome length	55201332
location	32649843 ~ 32649959 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035856
tgccacagccatgtcaccctgcaccccaagactggttactcactaaagctaagcagggctatgCCCGAgcaatacctggatgggagaccacatgggaaaagtaGATTGCGTTGGAAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108566

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00035856	True	117	rRNA	0.53	1	32649843	32649959

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_018195	CU138515.2	coding	downstream	189452	32460275 ~ 32460391 (-)
XLOC_018194	nr2e1	coding	downstream	203437	32437396 ~ 32446406 (-)
XLOC_018193	afg1lb	coding	downstream	244392	32337522 ~ 32405451 (-)
XLOC_018192	foxo3b	coding	downstream	317107	32286765 ~ 32332736 (-)
XLOC_018191	armc2	coding	downstream	378977	32228210 ~ 32270866 (-)
XLOC_018197	si:dkey-6f10.3	coding	upstream	5899	32655858 ~ 32752457 (-)
XLOC_018198	si:dkey-6f10.4	coding	upstream	16425	32666384 ~ 32669342 (-)
XLOC_018199	nbas	coding	upstream	188508	32838467 ~ 33174899 (-)
XLOC_018200	NA	coding	upstream	580204	33230163 ~ 33293844 (-)
XLOC_018201	NA	coding	upstream	699215	33349174 ~ 33463368 (-)
XLOC_017928	CU539064.1	misc	downstream	22596142	10053405 ~ 10053701 (-)
XLOC_018188	NA	non-coding	downstream	510775	32137025 ~ 32139068 (-)
XLOC_018183	NA	non-coding	downstream	905337	31557868 ~ 31744506 (-)
XLOC_018177	NA	non-coding	downstream	1582537	31002188 ~ 31067306 (-)
XLOC_018178	AL929014.1	non-coding	downstream	1604638	31045075 ~ 31045205 (-)
XLOC_018210	BX571790.1	non-coding	upstream	1051158	33701117 ~ 33701233 (-)
XLOC_018211	NA	non-coding	upstream	1058159	33708118 ~ 33711255 (-)
XLOC_018212	NA	non-coding	upstream	1063581	33713540 ~ 33717068 (-)

Expression

Co-expression Network