XLOC_018197 (si:dkey-6f10.3)


Basic Information

Item Value
gene id XLOC_018197
gene name si:dkey-6f10.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 32655858 ~ 32752457 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035857
AATAAGTTGTGTCTTTGCATTTTCAGCGTTTTAATACTTGAAAATGGAAGTTGAAATCTCTTGCAAGATCACCAAGCGCCAGAAAAAAGCGCAGCAAGGCAAAGAAAGGCCTGGGAACGGCACTAATAACTACGAGAATGAGGTCTATCAGAAAATGATGGTGAAAGTGGAAGAAGAGAAGGAGATGATACAGAAGGAGGAGGTGGTGGAGAAGGTGGAGAAAGTGACAAAAGAAGAAGATGAGATTttggagaaagaggaggaggtgGTGATTGAACTGGAGGAGGGGAAGGAGAAAGAGAAAGATAACACAAATGAAGGGAAGCCAGAGGAGGAAGGGAAgcgaaagagaaaaaagaaaaacattagcaGCCGATTGTCAGAGGAGGAGTTTTGGAGGAGGAGGAAAATAGAGGAGGAGAGGGtggaggagaaagaggaggaggtgGTGATTGAACAGAAGGAGATGGAGAAAGAGAACATAAATGAAGAGAAGCCAAAGGATGAGGAGAACATGGAAGAggagaaagtgaaaaagaaaaggaggaggagaaggaggccAAGAAACTGCAGTGTGGAAGAGGAGGCggtgaaagaaaacaaaagtgaggAGGTGGAAAAGAACGAAGAGAAAGAGATGAATGACATTGAAATAGAGGAGAACATGGAAGAggagaaagtgaaaaagaaaaggaggaggaggaggaggccaAGAAACTGCAGTGTGGAAGAGGAGGCGGCGAAAGAAAATGAAAGTGAGGAGGTGGAAAAGAACGCAGAGGAGAAAGAGATGAAAGACATTGAAATAGAGGAGAACATGGAAGAggagaaagtgaaaaagaaaaggaggaggaggaggaggccaAGAAACTGCAGTGTGGAAGAGGAGGCGgtgaaagaaaatgaaagtgaGGAGGTGGAAAAGAACGCAGAGGAGAAAGAGATGAAAGACATTGAAATAGAGGAGAACATGGAAGAggagaaagtgaaaaagaaaaggaggaggaggaggaggccaAGAAACTGCAGTGTGGAAGAGGAGGCGgtgaaagaaaatgaaagtgaGGAGGTGGAAAAGAACGCAGAGGAGAAAGAGATGAATGACATTGAAATAGAGGAGAACATGGAAGAGGAGAAAGTgaaaaagaagaggaggaggaggaggaggccaAGAAACTGCAGTGTGGAAGAGGAGGCGGCGAAAGAAAATGAAAGTGAGGAGGTGGAAAAGAACGCAGAGGAGAAAGAGATGAAAG
>TCONS_00035858
TGATCACTGAGGTTGACTGGATGCAACGAACGGGGAACATTCAGTACACTACCTGTGTTTCTTGGATAATCTCACATGGTCCACTGAGCAGCACCAAAATTGATTTCAAGGCCTTGAGGTGATGTAGAGGGGTCATGGACAGGGCAGAGGAGTTTGATGATGTCAGCAGGGTGCTGGAGTCACATAAACCACcctgttatttaaaagaatcATCTAAGGACACAAAGATGAAAAGATGAGAAGGACAAGGTGgagaagcaaaaaaagaaaaagaagagcaGGGTTGGCTCTTTTATCAGAGCTGCCCTAAAATGGTTTTGCTTCTCTCCAAGAAATGAGCCGTTTCAACTTTCATCCTCTGATGACTACGAGAATGAGGTCTATCAGAAAATGATGGTGAAAGTGGAAGAAGAGAAGGAGATGATACAGAAGGAGGAGGTGGTGGAGAAGGTGGAGAAAGTGACAAAAGAAGAAGATGAGATTttggagaaagaggaggaggtgGTGATTGAACTGGAGGAGGGGAAGGAGAAAGAGA
>TCONS_00035859
GAGTCGAATAAGTTGTGTCTTTGCATTTTCAGCGTTTTAATACTTGAAAATGGAAGTTGAAATCTCTTGCAAGATCACCAAGCGCCAGAAAAAAGCGCAGCAAGGCAAAGAAAGGCCTGGGAACGGCACTAATAATGAGAAGGACAAGGTGgagaagcaaaaaaagaaaaagaagagcaGGGTTGGCTCTTTTATCAGAGCTGCCCTAAAATGGTTTTGCTTCTCTCCAAGAAATGAGCCGTTTCAACTTTCATCCTCTGATGACTACGAGAATGAGGTCTATCAGAAAATGATGGTGAAAGTGGAAGAAGAGAAGGAGATGATACAGAAGGAGGAGGTGGTGGAGAAGGTGGAGAAAGTGACAAAAGAAGAAGATGAGATTttggagaaagaggaggaggtgGTGATTGAACTGGAGGAGGGGAAGG
>TCONS_00036881
ATGGAAGTTGAAATCTCTTGCAAGATCACCAAGCGCCAGAAAAAAGCGCAGCAAGGCAAAGAAAGGCCTGGGAACGGCACTAATAATGAGAAGGACAAGGTGgagaagcaaaaaaagaaaaagaagagcaGGGTTGGCTCTTTTATCAGAGCTGCCCTAAAATGGTTTTGCTTCTCTCCAAGAAATGAGCCGTTTCAACTTTCATCCTCTGATGGTAAATGATGGTTTCTGCATCTAAACATTTTATCTACTGCAT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-339 No description available

Ensembl:

ensembl_id ENSDARG00000093660

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035857 False 1256 mRNA 0.45 2 32655858 32658305
TCONS_00035858 False 538 mRNA 0.44 5 32656812 32752457
TCONS_00035859 False 428 mRNA 0.43 3 32656821 32658311
TCONS_00036881 True 256 lncRNA 0.42 2 32657086 32658262

Neighbor

gene id symbol gene type direction distance location
XLOC_018196 CR354385.1 coding downstream 5899 32649843 ~ 32649959 (-)
XLOC_018195 CU138515.2 coding downstream 195467 32460275 ~ 32460391 (-)
XLOC_018194 nr2e1 coding downstream 209452 32437396 ~ 32446406 (-)
XLOC_018193 afg1lb coding downstream 250407 32337522 ~ 32405451 (-)
XLOC_018192 foxo3b coding downstream 323122 32286765 ~ 32332736 (-)
XLOC_018199 nbas coding upstream 86010 32838467 ~ 33174899 (-)
XLOC_018200 NA coding upstream 477706 33230163 ~ 33293844 (-)
XLOC_018201 NA coding upstream 596717 33349174 ~ 33463368 (-)
XLOC_018202 smek1 coding upstream 714704 33467161 ~ 33487729 (-)
XLOC_018203 erh coding upstream 741467 33493924 ~ 33497128 (-)
XLOC_017928 CU539064.1 misc downstream 22602157 10053405 ~ 10053701 (-)
XLOC_018188 NA non-coding downstream 516790 32137025 ~ 32139068 (-)
XLOC_018183 NA non-coding downstream 911352 31557868 ~ 31744506 (-)
XLOC_018177 NA non-coding downstream 1588552 31002188 ~ 31067306 (-)
XLOC_018210 BX571790.1 non-coding upstream 948660 33701117 ~ 33701233 (-)
XLOC_018211 NA non-coding upstream 955661 33708118 ~ 33711255 (-)
XLOC_018212 NA non-coding upstream 961083 33713540 ~ 33717068 (-)

Expression


Co-expression Network