XLOC_018202 (smek1)


Basic Information

Item Value
gene id XLOC_018202
gene name smek1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33467161 ~ 33487729 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00035865
GGACCCAAGATGGCCGAATCTtcacagtggggctaataattactTTTCGTCAAGACGCTGCTATTTCATGGTGCTCGACGCTCGCGCTGGCCATTCGTCGTTCCGGAAAGCAAAACAAGTGACTCTGTTCAAGTAGTTGCATCGGGGAATGTTTATTTATGCGTGAAGAGACTGGCTGGTCCAACCGCGGCCCTTAGCCAGAATATGGCGGAATACCTGGAGAAAATATAGCTTAGCTTATTATGAACGCGCCGCTTTATACACGACTCTTCCCGCCTTTTCACCGACCTCGCGTGAGTATAATGATTAAATAGCGTTATCGGTACGTCTCTGAAATTCATTCGCGTGTGTTTTGCGCAATTCTGTGTTAAAATGACTCTCGAGAGGAGATAGCCTGCTAGCTGAGGCGCTAGCTACGCTAACCCCGTTTGACTGAATTAGTCGCAGCGTTAGCTTAGCCTAGCTAGCTTAAAGTAAGGGGGCACGAAGAAGAGCAAACACTTTCTTCATCCGCGCTCTGGCTGCATGCTTTTAAACTCATCTCACTCTTATTTTTCGTGCTTCTGTTTATAGAGAGTTTAAAATACCGGGTATGTTGTGGGGAGTCTCGGCTGCACACAGCAGCTAGCTGACCATCACTGGACTGGTCAGAATAATTGTGTGGACAGCGCAAGTTTACTGCGAGAGACTCCACAACAACACACTGCTTCAGCTCCTCGCCCGCGAACGCCGTACATTTCAGTTTGAAGTTGACATCAGATTCTGTTGCATCTCGAGGACTTTGAGATTTATTGAATCAAGGGCAAAAGCCTATCCGAGAGTTACTTGCAAGGATGACTGACACTCGTAGACGAGTAAAAGTGTACACTCTGAATGAGGACCGCCAGTGGGACGATCGGGGAACGGGACATGTGTCATCCGCCTACGTGGAGAGGCTCAAAGGCATGTCTCTCCTGGTGCGCGCCGAAAGCGATGGGTCACTGCTGCTGGAGTCCAAAATCAATCCTAACACCGCCTATCAAAAACAGCAGGACACATTAATAGTTTGGTCTGAGGCTGAAAACTATGACCTGGCCCTCAGCTTCCAGGAAAAGGCTGGTTGTGATGAGATCTGGGAGAAAATATGTCAGGTCCAGGGAAAGGACCCATCGGTAGACATCACCCAGGAGCTGATAGATGAGTCTGAGGAGGAGCGTTTTGATGACATGTCCTCTCCTGGTCTTGAACTTCCTCCATGTGAACTCTCCCGATTGGAGGAGGTGGCCGAGCTGGTGGCGTCATCCTTGCCTTCTCCGCTACGGCGGGAAAAGCTGGCCCTGGCGCTGGAGAACGAGGGCTACATCCGCAAGCTGCTGGAGCTTTTCCGCGTCTGCGAGGACTTAGAAAACAGAGAAGGTCTGCATCACCTCTATGACATCATCAAAGGCATTTTCCTACTCAATCGCACGGCGCTCTTTGAAGTCATGTTCTCTGAAGAATGCATCATGGATGTGATTGGCTGTCTGGAGTTTGATCCATCGCTACCCCAACCACGGAGGCATCGGGAGTTCCTGACCACCACTGCACGCTTTAAAGAGGTCATTCCCATTTCGGACCCAGAGCTGCGGCAGAAGATCCACCAGACGTACCGGGTGCAGTATATTCAGGACATGGTGCTGCCCACTCCATCGGTCTTTGAAGAAAACATGCTTTCCACCCTCCACTCCTTCATCTTCTTCAACAAAGTGGAGATTGTTGGCATGCTGCAGGATGATGAGAAGTTTTTGACTGAGCTCTTTGCGCAGCTAACTGATGAAGCCACAGATGACGACAAACGGCACGAATTGGTAAACTTCCTGAAGGAGTTTTGTGCGTTTTCACAAACGTTACAACCACAGAACAGAGATGCGTTCTTTAAAACCCTTTCCAACATGGGAATCCTGCAAGCGCTGGAAGTTATTCTTGGCATGGATGATGTGCAAGTGCGTGGAGCAGCCACTGATATCTTCTCCTACCTGGTGGAGTACAACCCTTCTATGGTGCGAGAGTTTGTCATGCAGGAGTCACAGCAGAATGATGATGACATTCTGTTGATAAATCTGATCATTGAGCATATGATCTGTGACACGGATCCTGAGTTGGGGGGAGCTGTTCAGCTTATGGGTTTGCTCAGGACGCTAGTGGACCCAGAGAACATGCTAGCAACTGCTAATAAAACTGAGAAGACCGAGTTTTTGAGCTTCTTCTATAAGCATTGCATGCATGTGCTCTCCGCTCCACTTCTTGCCAACACCACTGAAGAAAAACCCAGCAAAGATGATTTCCAGACATGTCAGCTGCTGGCTCTGATCGTAGAGCTGCTCACTTTCTGCGTGGAGCATCACACGTATCACATAAAGAACTACATCATCAACAAAGACATCCTGCGCAGAGTGCTGGTGCTCACTGCATCACAACATGCTTTCCTAGCCTTATGTGCTTTGCGTTTCATGAGAAAAATCATTGGCCTGAAGGATGAGTTTTATAACCGATACATTATGAGGAACTTCCTGTTTGAGCCAGTGGTCAAAGCTTTCCTCAATAATGGATCCAGATACAACCTCATAAACTCAGCCATTATAGAGATGTTTGAGTATGTCAGAGTGgaggaTGTGAAGTCACTGACGGCTCATATCATAGAGAACTACTGGAAGGGCCTGGAGGACGTAGACTATGTTCAGACGTTTAAAGGACTAAAGCTCCGATATGAACAGCAGAGAGAAAGACAGGACAACCCAAAACTTGACAGTATGCGGTCGATTCTGAGAAATCACCGTTTTCGCCGGGATGCACGGACACTGGAAGACGAGGAGGAGATGTGGTTTAATACGGATGAGGAAGACTTAGAGGATGGTGAAGCAGTTGTGCCTCCGTCGGACAAGATGAAGAATGACGAGGACCTTATGGATCCCATCAGCAAATTTATGGAGAGGAAAAAATTGAAAGATTCAGAAGAGAAGGAGGTGTTGACAGGGAAAGCAAGTCTCTCAGGACGGCAAAGTCCCAGTTTTAAACTGTCCTTCTCCAGCTCGCCAAAGGCAAGCCTGTCCTCTCCGCCGACTGCATCCCTTCATCCCGGTTCACCTGGTTCTCCTAGCTCTCCCGGGACAGGGGCCCGGAGCTCTCCCCCTTCGGCAGCTGTCACCACTAAGGGAGGTTTAGTGGGGCTGGTGGACTATCCTGATGATGACGAAGAGGACGAGGATGAGGAAGATGCAGACAGTAAAGAAGAAAGTCCTCCGCTGTCCAAGAAGTCCAAGCTGAGCTCCTAAAAGCACTCCCTCCTCAATCAGCACAGTCACGCTCGAAGGGAGCTTCATCCAGAGACTTTTCCAGTGCTCAGCCTAGAACTCAAACTGAAACTAAATGAATGATGATGAATAcacaaatgaatggataaatgaacgAATGCAGCCCCCCGCAGGAGTCCACGGGGCGCCATGTGAGGAACGGAGGACAGGGAGAGCAAGAGAGGGAGAAGATTCGGTCCCAGAACCAAAAGGTGAATGTCTCCACGTGGAGTTTGTCCAAGTGCCAAtctgcaagagagagagagagagactcgtGAAGCGGACAGAGGGATGGAGGACTGTGGTCTGGACAaagaattataataaaataagaaattaattTCGACAAAGCTAAAAGTTCTGGGGGGTAAAACAGACCTCACACGCAGTCCGTCAGTCAGTCGTTCACTCACAGACACTCGAACTGTTGCCCCACAGAGCGTCCCAGGCCTGGACCAGGACACACTGCCCCCCCCTCTCAGGGAAGGACCTCACATGACCCGAACTGGGCCAGCCAATCCACAACCACCACTCACCTTTGCTGATCTCCATCTCCATTTCTTTCTCTCCTTCCTccagcttttttttctgttgttttttttcccccttgttTTTGACTTTCTAGGGCCAGGCGGGACACTATAGGGAGCAAAGAAGTCTGGGTCGTCATTGTTTAAGATGTCACTGTTGTTCTTGTGGCTCAGCGGAAGTTCTTCCTCTTTCAAAGCCAGCAGTTCCCTCCTTTTTCTTATTCTGTTGTTCTCCTCTCTggtttttttaaaatgacacaaagagACCTGCCTTTAAATGTTCAGGACGTTTTCAGCCGCACTTGAACAGGTTTTTAAAACCTCAGTGGGGGGGAGATAGTTTTACCCTTTTTTTGCCCTTCAAAACTGCAGATTTTTTGGAAAATTTGTAAGCCCGTCTTGATTAAAGATTGAGTGGAACTCTATAGATGTGATTGATTTCTGTcatatcttcatttttttttcttttcttttacttgtGTACACTCTTAGTTGTTCAGTATATTTGGGACCATTAAAAGATCTTTGCTGTAGTAGATCTCTCCCGGTTGTGCTGGTTCCCTGTATTATGTTCAACTGTGCTGATCTTTTTGTTATTTGAACTGGGATTTGGTCATTGAAATGATCCTCCTGTCTGCTCGTCTGAATACGTCAATGGAGAAGCCGTGTCTCTGCTAAACAGCCTGCACACAATTAAAgataacagtttttattttctgaaaaa
>TCONS_00035866
ATCATCAACAAAGACATCCTGCGCAGAGTGCTGGTGCTCACTGCATCACAACATGCTTTCCTAGCCTTATGTGCTTTGCGTTTCATGAGAAAAATCATTGGCCTGAAGGATGAGTTTTATAACCGATACATTATGAGGAACTTCCTGTTTGAGCCAGTGGTCAAAGCTTTCCTCAATAATGGATCCAGATACAACCTCATAAACTCAGCCATTATAGAGATGTTTGAGTATGTCAGAGTGGTGAGTACATGGTTTCACACATCCCTTCTCTCGATGCTCTTGTACACACTGCTAGGTtgatatgttgtgtgtgtgtaggaggaTGTGAAGTCACTGACGGCTCATATCATAGAGAACTACTGGAAGGGCCTGGAGGACGTAGACTATGTTCAGACGTTTAAAGGACTAAAGCTCCGATATGAACAGCAGAGAGAAAGACAGGACAACCCAAAACTTGACAGTATGCGGTCGATTCTGAGAAATCACCG

Function

symbol description
smek1 Orthologous to human PPP4R3A (protein phosphatase 4 regulatory subunit 3A).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3958 Orthologous to human PPP4R3A (protein phosphatase 4 regulatory subunit 3A).

Ensembl:

ensembl_id ENSDARG00000042187

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00035865 False 4562 mRNA 0.48 15 33467161 33487729
TCONS_00035866 True 488 processed_transcript 0.44 3 33471221 33475485

Neighbor

gene id symbol gene type direction distance location
XLOC_018201 NA coding downstream 3793 33349174 ~ 33463368 (-)
XLOC_018200 NA coding downstream 173317 33230163 ~ 33293844 (-)
XLOC_018199 nbas coding downstream 292262 32838467 ~ 33174899 (-)
XLOC_018197 si:dkey-6f10.3 coding downstream 714704 32655858 ~ 32752457 (-)
XLOC_018198 si:dkey-6f10.4 coding downstream 797819 32666384 ~ 32669342 (-)
XLOC_018203 erh coding upstream 6195 33493924 ~ 33497128 (-)
XLOC_018204 paplnb coding upstream 11649 33499378 ~ 33512443 (-)
XLOC_018205 si:dkey-65b13.13 coding upstream 25935 33513664 ~ 33515890 (-)
XLOC_018206 rock2bl coding upstream 67652 33555381 ~ 33556983 (-)
XLOC_018207 si:dkey-65b13.9 coding upstream 76696 33564425 ~ 33566640 (-)
XLOC_017928 CU539064.1 misc downstream 23413460 10053405 ~ 10053701 (-)
XLOC_018196 CR354385.1 non-coding downstream 817202 32649843 ~ 32649959 (-)
XLOC_018195 CU138515.2 non-coding downstream 1006770 32460275 ~ 32460391 (-)
XLOC_018188 NA non-coding downstream 1328093 32137025 ~ 32139068 (-)
XLOC_018210 BX571790.1 non-coding upstream 213388 33701117 ~ 33701233 (-)
XLOC_018211 NA non-coding upstream 220389 33708118 ~ 33711255 (-)
XLOC_018212 NA non-coding upstream 225811 33713540 ~ 33717068 (-)
XLOC_018213 NA non-coding upstream 233265 33720994 ~ 33722205 (-)
XLOC_018214 NA non-coding upstream 238163 33725892 ~ 33728373 (-)

Expression


Co-expression Network