XLOC_018213


Basic Information

Item Value
gene id XLOC_018213
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33720994 ~ 33722205 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00036889
GAGACCCGCAGTGCAGGTGGCTGGTAGTGAACAAGCTTAGTCTTATGTACAGTTTAGGCACATGAAGATATCAAATGTTCTTGTTGCAATTATTTGCTAAAGCTTTTATTGCATATAATATTATCCCAATAACAACTTAAGCTGCAGAAAAGATTACTTTAAAGTTCCTGTGAaattagttattgacatattcttattaaatgacaacttttttacatgatgggatgtttttttaaaagttgtttacattttaagactttttatttaaaaaaacaaatgttatgcatactgtttgctataatcgaatgcaaaaactttgaatctcaatatctcaaaatcattcagaacgcagatagaacctttaaATTCCAACGTGACGATGTCTAGTTATGTACATATTTGGtacttttacagtgtagtttaaaaGTATAAACCAATTTATAAACaccttgatttttgtttttcagaaataCAAAATGTGAAGGTTGTAGGTCATTGTCTGATTTTGATATTGATTGAATTTGTGTGTTCTCATTAGCTATTTTGATCTAATTCTACTCATACCTTTAGTAGTTCTTTGTTGGAGATATAGAGTTCAGGGTTCTGCAAGAACTTTTCTAGGGCTTCTTTGCTGGAGAAGTAATAAACTTTGTCTCTGTACTTGGCAGCGTATTCATCCAGACATGGTTGTAGCAGACCTTTCTCCTTCAGAACCACTGGACAAAAATGCTTGGTGTCTCCCAGCTGCCTCTTAAAGTTGAACTCCTAATGGGACCATCATAAACAAAGACAGGTATGATATTCTGAGAATCAGCAATGGTTTGTTTACATAGgaagagtttttcttttttttcaatgttcatccattcattcattcatcttctgccgcttttccggggctgggtcgcgggggcagcagtcttaggagagaaccccagacttctctatccccag
>TCONS_00036890
TCCTCAAGACTGGTGGTGTTGTCCTGGTCTGTAGGTGATTCTGCACTCTGAATCCGGGCCTGAGCTTTAAGCAAGCTCTGCAGCTCCTCTGGAGGTTCCTCGGGTGGTTCTGAATCATCAGCAGGTGACACTCGTTTCTGGGTCTTTCGTTGAATGAGCTCTTGCAGACGCTCTCTGAACTGGATGTGGAAAATTCCCAGTTGCTGGGCAAGCCACTTCCCATGAGTCGTCTTCCCAGAACCCCTCACTCCTAGCATGGAGACCCGCAGTGCAGCGTATTCATCCAGACATGGTTGTAGCAGACCTTTCTCCTTCAGAACCACTGGACAAAAATGCTTGGTGTCTCCCAGCTGCCTCTTAAAGTTGAACTCCTAATGGGACCATCATAAACAAAGACAGGTATGATATTCTGAGAATCAGCAATGGTTTGTTTACATAGgaagagtttttcttttttttcaatgttcatccattcattcattcatcttctgccgcttttccggggctgggtcgcgggggcagcagtcttaggagagaaccccagacttctctatccccag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00036889 False 954 lncRNA 0.35 1 33720994 33721947
TCONS_00036890 True 560 lncRNA 0.49 2 33720994 33722205

Neighbor

gene id symbol gene type direction distance location
XLOC_018212 NA coding downstream 3926 33713540 ~ 33717068 (-)
XLOC_018211 NA coding downstream 9739 33708118 ~ 33711255 (-)
XLOC_018209 rock2b coding downstream 15950 33601046 ~ 33705044 (-)
XLOC_018210 BX571790.1 coding downstream 19761 33701117 ~ 33701233 (-)
XLOC_018208 rock2b coding downstream 137215 33571312 ~ 33583779 (-)
XLOC_018214 NA coding upstream 3687 33725892 ~ 33728373 (-)
XLOC_018215 NA coding upstream 12648 33734853 ~ 33735274 (-)
XLOC_018216 fam102bb coding upstream 30762 33752967 ~ 33790003 (-)
XLOC_018217 atf6 coding upstream 87229 33809434 ~ 33909872 (-)
XLOC_018218 selp coding upstream 226437 33948642 ~ 33966148 (-)
XLOC_017928 CU539064.1 misc downstream 23667293 10053405 ~ 10053701 (-)
XLOC_018201 NA non-coding downstream 257626 33349174 ~ 33463368 (-)
XLOC_018200 NA non-coding downstream 427150 33230163 ~ 33293844 (-)
XLOC_018224 NA non-coding upstream 410365 34132570 ~ 34147596 (-)
XLOC_018225 BX248238.1 non-coding upstream 429528 34151733 ~ 34153001 (-)
XLOC_018229 NA non-coding upstream 779565 34501770 ~ 34502671 (-)

Expression


Co-expression Network